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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0309300 |
| Transcript ID | LotjaGi2g1v0309300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G27060.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1J5K0|I1J5K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78386238..78388850) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAACATCAAAATAGTAAAAAAGAAAAAGTGCAGAACATGATGAACCAGTCAACAGAACACAAAGTGAGTTAACCA GAGTGATGGAAGAACATGAACAGTGGGAGAAACCAGACAACGAAGACGACAAGCATCAACCAGAACAACGAATATGGAGT TGGGGTGCAGGAACAGAGGGCCAGTTAGGAACAGGGAAGCTTCAAGACGAGCACCACCCTCAACTCCTTCACCAACCCTC TCTGTCTTCCATCTCCTCCCTTGCATGTGGCGGCGCTCATGTCGTCGCCTTGACTTCCGACGGGAAGGTACTGTCATGGG GTAGAGGCAGTTCTGGTCAACTAGGCCATGGAGAGGTTGTTAATAACGCCTTGGAACCAAAAATTGTAACATCATTGGAT GGTTACTTCATAACCCATGTTTCTGCTGGTTGGAGTCACTCTGGTTTTGTTTCAGGTTTGTCAAAGCAATACTCGAGGTT TGTTGTGTTGAATGTTTTTTAATTTTTTTGCCTTTTTGATTAGTGATTGGTTGGTTTTCAGATACTGGGTGTTTGTTCAC TTGTGGGGATGGTTCGTTTGGTCAACTTGGGCATGGGGATTATGCATCACAGTGCTTTCCTGTGAGAGTTTCATGTTTTG TTGATCAGCATGTTGTGAAGGTAGCTTGTGGTATGAGACATTCCCTTGTTTTGCTGAAAGGTATTGGATTGGTTGAACTT GAAGTTGTTGCCTGGACTAGTTCAGTTTCTGTTTCAGTAGGAATCAAGTTTTTGACAAAAGTTGTTGAGTTGCAGATTGT CCATTGAATCAAGTTTATGGATTTGGCTCTGGAAAGCGTGGTCAATTGGGTGTCTCCAAAGATAGGATCAAATCTATTAA TCTTCCTAAAGTTGTTAGTGGATTTGAAGATGTGCAGATAGTTGAAATTGCTACAAATGGTGATCATAGTGCTGCACTAT CTGGTAAATCCCTACCATACTTTCCCCTTGCAGAACATGTGAATCAGATGAACTAAATAGTTCCATTGTATTCTTCCTCT CTTTTTTTTTTTGGTTGGTTGCTATTTCATCAGTTGATGGGCATCTTTACACCTGGGGAAGAGGCTTCAAAGGCTGTGAA GATTCTCATTTTCCACAATGTTTAGACTCTACAATGAGTTTTACCAAAGCCACTTTGGGATGGAACCATGGTTTAGCTAT GACTGGTATTTACCAACACTTTATACTAGGATTCTTATGATCCCCTCCCTCACTTTCATCACTTCCCTATTTAAGAAGTG TACATTTTGTTATCAATTTTGTGTATAGGTGAGGGTGAGGTTTATATGCTTGGTGGCAACCACCTTGGAATGCTTAGTGA TATTCAGAATGTGAGCTCAGCTAAGCAGTTACCTGGTAATACATTTATTAAAGACATCACAATTTATTTTATAGACTCTG TTGTTGCCTCCATCTCCAATCGTTATGAATATCGGCAATTTCAATATATTTGTGAAAAAAAAAAATATTACACTGCATAA ATTCCAAAGGTAAATTATTAGTATATAGGAAACGTGTAAAATATTTTAAATAGCATCACCCTTATCTTTATTATGCATTG TCATTCTGTAGTAGATTCAAGAGAAGCCAATTTGGATAAAGTCCTTGGCCTTGAAGGGGCAAAGGTTGTTGATATTGCTA CGGGAGCTGAACATTCCATCCTTGTCACAGGCAATGTGTAGTTCTCTTCTTGTTCTTGAGCAATTTTACAATGACATTAA CATGCTGACTTCTGTCTTTCTTACTTATTTATAGAGAATGGAGAAGTAAAGACATGGGGTTGGGGTGAGCATGGTCAACT TGGCTTGGGAGATACTTGTGACAGGATCAGTCCTGTTACAGTAAGTATCGGGTATGATCTGAATGAAGCTGCATCAATCA GAGTTTACTGCGGAAGTGGCTTCACGTTTGCTTTAACTATGCCATAAAATCTTCTCAAACTCGAAGATGCACTACTTTGG CATGCATATCTAAAGAAGTCATCATCAGTTTAGTTCGAGTACTACATTTACAGTGGCAGTATATAGAATGATGATACACC CCAAGGAAGGCTTTATACTGCTCAAGTGTTGCTTAGGATACAAGCTGCACTGCACTAGCCATAGGCTCCTATGGTCCCTC ACAAAAACTAGGATGGAGAAGGAATGTGGATATAGATATGCAGCCAGTTTGGGAGCTTATTAGAGCTTGTCTATTGGGAA GAAAACACTAAATAAGGTCCATTTAATGGACTAGTTTTGGCGGTATAGAGTGGCGGCAGCTAGAGGCATGTTTCCCGAAT TCTGGTTTGAGCTAGAACATGGATGAGATTCTGCACTGGACTTTACCCGTTAATTTAAGAGGGTGAATGATTGTAGTCCA TAATACTGCCATTTCTTTATAGAGAAAGGGAAAGGAAAACCAAACAATGTCATAATTTTCCGTTTCTTGTTGTAATTGAT TCGATTTGAGTGGGACTTTGGAATGTGAAATAACAAGGAAAAATTGGAAACCTGTGTTTTCTTCCACCCTCGTCGTTTAT CAAAAGAAGAGGAAAAGATCAAAGCTGGCTCTCAAACGCATGCATACTTTAAC
CDS sequence (LotjaGi2g1v0309300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACATGAACAGTGGGAGAAACCAGACAACGAAGACGACAAGCATCAACCAGAACAACGAATATGGAGTTGGGG TGCAGGAACAGAGGGCCAGTTAGGAACAGGGAAGCTTCAAGACGAGCACCACCCTCAACTCCTTCACCAACCCTCTCTGT CTTCCATCTCCTCCCTTGCATGTGGCGGCGCTCATGTCGTCGCCTTGACTTCCGACGGGAAGGTACTGTCATGGGGTAGA GGCAGTTCTGGTCAACTAGGCCATGGAGAGGTTGTTAATAACGCCTTGGAACCAAAAATTGTAACATCATTGGATGGTTA CTTCATAACCCATGTTTCTGCTGGTTGGAGTCACTCTGGTTTTGTTTCAGATACTGGGTGTTTGTTCACTTGTGGGGATG GTTCGTTTGGTCAACTTGGGCATGGGGATTATGCATCACAGTGCTTTCCTGTGAGAGTTTCATGTTTTGTTGATCAGCAT GTTGTGAAGGTAGCTTGTGGTATGAGACATTCCCTTGTTTTGCTGAAAGATTGTCCATTGAATCAAGTTTATGGATTTGG CTCTGGAAAGCGTGGTCAATTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGATTTG AAGATGTGCAGATAGTTGAAATTGCTACAAATGGTGATCATAGTGCTGCACTATCTGTTGATGGGCATCTTTACACCTGG GGAAGAGGCTTCAAAGGCTGTGAAGATTCTCATTTTCCACAATGTTTAGACTCTACAATGAGTTTTACCAAAGCCACTTT GGGATGGAACCATGGTTTAGCTATGACTGGTGAGGGTGAGGTTTATATGCTTGGTGGCAACCACCTTGGAATGCTTAGTG ATATTCAGAATGTGAGCTCAGCTAAGCAGTTACCTGTAGATTCAAGAGAAGCCAATTTGGATAAAGTCCTTGGCCTTGAA GGGGCAAAGGTTGTTGATATTGCTACGGGAGCTGAACATTCCATCCTTGTCACAGGCAATGTGTAG
Protein sequence (LotjaGi2g1v0309300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEHEQWEKPDNEDDKHQPEQRIWSWGAGTEGQLGTGKLQDEHHPQLLHQPSLSSISSLACGGAHVVALTSDGKVLSWGR GSSGQLGHGEVVNNALEPKIVTSLDGYFITHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDYASQCFPVRVSCFVDQH VVKVACGMRHSLVLLKDCPLNQVYGFGSGKRGQLGVSKDRIKSINLPKVVSGFEDVQIVEIATNGDHSAALSVDGHLYTW GRGFKGCEDSHFPQCLDSTMSFTKATLGWNHGLAMTGEGEVYMLGGNHLGMLSDIQNVSSAKQLPVDSREANLDKVLGLE GAKVVDIATGAEHSILVTGNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 14 | 338 | 325 | 1.0E-153 | – | |
| PANTHER | 14 | 338 | 325 | 1.0E-153 | – | |
| Gene3D | 17 | 339 | 323 | 7.3E-76 | ||
| ProSiteProfiles | 21 | 72 | 52 | 15.851 | ||
| SUPERFAMILY | 21 | 338 | 318 | 9.59E-72 | ||
| Pfam | 22 | 69 | 48 | 4.1E-11 | ||
| PRINTS | 22 | 38 | 17 | 3.2E-12 | ||
| PRINTS | 56 | 69 | 14 | 3.2E-12 | ||
| Pfam | 72 | 121 | 50 | 8.0E-13 | ||
| ProSiteProfiles | 73 | 125 | 53 | 14.363 | ||
| PRINTS | 75 | 91 | 17 | 3.2E-12 | ||
| ProSiteProfiles | 126 | 177 | 52 | 14.062 | ||
| Pfam | 126 | 174 | 49 | 7.2E-12 | ||
| PRINTS | 164 | 180 | 17 | 3.2E-12 | ||
| ProSitePatterns | 164 | 174 | 11 | - | ||
| ProSiteProfiles | 181 | 234 | 54 | 14.645 | ||
| Pfam | 182 | 231 | 50 | 1.5E-7 | ||
| PRINTS | 268 | 286 | 19 | 3.2E-12 | ||
| ProSiteProfiles | 279 | 340 | 62 | 10.102 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0309300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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