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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0312200 |
| Transcript ID | LotjaGi2g1v0312200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT1G70000.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1; TrEMBL-Plants: tr|A0A0S3T2U3|A0A0S3T2U3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78702349..78705490) extracted from Lotus japonicus Gifu genome v1.2.
GCTCCCCCTCAGGATAACTTTTACACATGATTGACAGGATAGGATAGGAGACAGGATAATGTTATCATATCCTGCTGGCG CAACAAACAACAGATAACAACAGGATATGATTATTATCCTGTCCTATCCTATCATGTCCTGGTCACCAAACGGGCCATAA TGGACGGTTCCGATTGATATTGATAGGTGTTCCACCCTAAAACGTACCATTTCCAAATACTAAGAGAGACATCAATCCAT TCGTGCCCATCTGTCCATCCAAAAATAACATAGTGCGACACACTAACATTTCTTCCCACACGGTGTACATAACATGTTGT ATTTTTTTAACAGTTATCTTTTGAAAGAATTAGTAATAGTAAATCAAATACACTACCATTAACATATTAGAATAATATTT TGTTCACATATGAAACACTTCCACCTTTGAGATATATAATATGAAAAAAATGAGAAATATGTTAAATGATTGAATAAAAA TATAAGAAAATAATATCAGAGAAAATGAAATACAAAAGAGAGGTAAATGAAAATGGATCTCCACTCAAACATATATAGTT AATTAAACTGGCAAACGCCTCTATATATCACCCAAATCTCCCCCAAGTAATAACTTTCTCTTTCCCTCTACATCAAAGCT AGCTAGATCAGATTAGAGAAAGAAACACGAAACACCCCATTCCCTCTTTCAATTTCTAATCATACATCATATCATTTCAT ATAATCTCTTGATCTATAGCTATACATACACAAATATAAATGATCTCTTGTTCTTTGTTTTGCATGGGTTGATCATCAAG CGAGCAAGCATTAATTATTTTAAGCTATGATGATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCCCGC ACATGCACCGACACCGCCGCCGCTGGAGACAACGGCATCATGCTCTTCGGCGTGCGCCTCACCGAAGGCTCCACCTCCTC CTCCGCCTTCATCAGGAAGAGCGCTAGCATGAACAACCTCTCCCAGTATAACGAACCCGAATCCAACCCCGCTGACGCAG CTGGCTACGCCTCCGACGACGTCGTTCATCCCTCCGCACGCGCCCGCGACCGCAAGCGAGGTAACTAACAATAAATCATA CAACTAACTACCGTATATAAATTTGTTTTGGGTTTGAATTTGGATGAATTGGTTTAAAAATATGAAGGTGTGCCTTGGAC GGAAGAAGAACACAAACTGTTTCTGTTGGGATTGCATAAAGTGGGGAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCG TCAAAACTCGCACACCCACTCAGGTTGCTAGTCATGCTCAGAAGTATTTCCTCCGCCGTCACAACCATAACCGCCGGCGC CGGAGATCTAGCCTTTTCGACATCACCACCGATACGGTACTAATTAATTGATTAATAACTGCATCTGATTTCAAAATTAA TCTGATTTTTAAGAATAGATCTGTGTTTAATTTAATTATTTTTTGAATCAATTAGGTGATGGAATCTTCAACAATAATGG AGGAAGAACAAGATCAGCAAGAAATGGTGCCGCCAGCTACCTCCGCCGTGTATCCGCCGTTACATTACGGTGGCTTCCAC GGCCCAGCGTTTCCAATGGCTCTGTCTCCGGTGGTATTGCCGGTGGCCGGAGGGGAAAGACCGGCAAGGCCGATTAGGCC AACGCCGATTTTCCCTGTGCCTCCGTCTTCTAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCAGCTTCTCCTTCCCCTT CTTCTCCATTTGAGCCTCTACCGCTGTCGCTGAAGCTGCAGCCATCTCCGCCGCCGTCCAAGGATCATTCTCCGGCAACC AGTAGCCACTCGTCGCCATCATCGCCGTCTTCTTCATCATCTTTTCAGGCTATGTCTGCAGGGAAGTTCAGCGGTGGTGG AGATAGCATTATTAGTGTTGCTTGAAGTGAAAAGAAAAAAATTAATGTGATTAAGTTATTAGTTAAGTACAATTAAGGTT TTAAAGTAGGAAATGTACCCAATAAAATATAAATTTAATTATATATATTTAGGATGGAGGGATGTATGAAAATGTATGTT ATGTTTACATATGGATTTTAAGGACATGCAAGACACATACAGATTAGTGGCGGCTTAAAACTGTCATCAACCTATATGTT TCTTTGAAGACGATTAGGATTTGTATGTACATGTATGATCATCACCCTTATAATTATGAGTAGCTAGAGAGATTATGATT TGGAAAGGATAACAAAATGGATTATGTTAAGTAGGTGATCAGGCGATTTAATTGGTGGTTTTGAATGATGTACAGGTTTT GATAAAAGGGGAAAGAAAGAGAAGATGGGTTGTCACATTGTGTATTTGTGTGGCTGTTGGAGGATTCTTGTTAATATTTG TCTAGGGGAGAGTGACCGTGAAGTGATAGGGCAGCGGGTACCCTTGGTCTGCTATTGGTCTGTTTATTGCCACTTGGGGT CTTTAAAATATTAGCTTAGACAGAGAAGAATATATTTATGCCCATTGTCTTGTTCTTGCTTGCTCTCATATGTCACTCGT TTGTATTTTCTTCTGTTTGGATGTTTACATTGAGTAAATCTTTTTTCCAACTAATTAATTCAAGTTTCTTATTATAAGTT AACGATGGGAGACTAAGAATGTAAATTCATCATTTAAAATTAGTGGAAAAATTTTCATGATTGCATTCTTTTAAGACAGA GGGCGTAATTGGAGATTGCATTTTGTGAGAGAATTTTGTGCATGTTTAACTAAGAATGTAAAGTTGACTTCTCCTTACAT GTAAGGAACAAAGTTGTTGGTGAGATGTAAATTCGACCTATAAACTCACAAGAGTTCAGAAAAAGAAAAAGCTGTAAAAC ATAGCATGTTATCTTTTTCTTGTTGTATTGGGTTGAAGTAGCTCTTATATTTTTTTTCAATAAAATTTCATGGGTTATAA AAATAAAATCAACTTCATAACAATGCAAACTTGTCATATTACATAGTAATATCATAAATCACAATTTTGAAATATGAATA ATATCATACAAAACAATTTAATACTAGTACTGATTCATGGGCAACAAAGAGAAATGAGATTTTAAAACGCTTACTAACTA ATTTGTGTTGTTTTAGTGTAGA
CDS sequence (LotjaGi2g1v0312200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCCCGCACATGCACCGACACCGCCGCCGCTGG AGACAACGGCATCATGCTCTTCGGCGTGCGCCTCACCGAAGGCTCCACCTCCTCCTCCGCCTTCATCAGGAAGAGCGCTA GCATGAACAACCTCTCCCAGTATAACGAACCCGAATCCAACCCCGCTGACGCAGCTGGCTACGCCTCCGACGACGTCGTT CATCCCTCCGCACGCGCCCGCGACCGCAAGCGAGGTGTGCCTTGGACGGAAGAAGAACACAAACTGTTTCTGTTGGGATT GCATAAAGTGGGGAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGCACACCCACTCAGGTTGCTAGTC ATGCTCAGAAGTATTTCCTCCGCCGTCACAACCATAACCGCCGGCGCCGGAGATCTAGCCTTTTCGACATCACCACCGAT ACGGTGATGGAATCTTCAACAATAATGGAGGAAGAACAAGATCAGCAAGAAATGGTGCCGCCAGCTACCTCCGCCGTGTA TCCGCCGTTACATTACGGTGGCTTCCACGGCCCAGCGTTTCCAATGGCTCTGTCTCCGGTGGTATTGCCGGTGGCCGGAG GGGAAAGACCGGCAAGGCCGATTAGGCCAACGCCGATTTTCCCTGTGCCTCCGTCTTCTAAGATGGCTAGTTTGAACTTG AAAGAGAAAGCAGCTTCTCCTTCCCCTTCTTCTCCATTTGAGCCTCTACCGCTGTCGCTGAAGCTGCAGCCATCTCCGCC GCCGTCCAAGGATCATTCTCCGGCAACCAGTAGCCACTCGTCGCCATCATCGCCGTCTTCTTCATCATCTTTTCAGGCTA TGTCTGCAGGGAAGTTCAGCGGTGGTGGAGATAGCATTATTAGTGTTGCTTGA
Protein sequence (LotjaGi2g1v0312200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMSRTCSQCGNNGHNSRTCTDTAAAGDNGIMLFGVRLTEGSTSSSAFIRKSASMNNLSQYNEPESNPADAAGYASDDVV HPSARARDRKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNHNRRRRRSSLFDITTD TVMESSTIMEEEQDQQEMVPPATSAVYPPLHYGGFHGPAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNL KEKAASPSPSSPFEPLPLSLKLQPSPPPSKDHSPATSSHSSPSSPSSSSSFQAMSAGKFSGGGDSIISVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 310 | 310 | 8.2E-113 | – | |
| PANTHER | 1 | 310 | 310 | 8.2E-113 | – | |
| ProSiteProfiles | 7 | 22 | 16 | 8.631 | ||
| MobiDBLite | 59 | 92 | 34 | - | – | |
| ProSiteProfiles | 87 | 143 | 57 | 17.81 | ||
| SUPERFAMILY | 89 | 142 | 54 | 1.12E-16 | ||
| TIGRFAM | 90 | 141 | 52 | 2.6E-16 | ||
| SMART | 91 | 141 | 51 | 1.3E-10 | ||
| Gene3D | 93 | 144 | 52 | 5.9E-16 | – | |
| Pfam | 94 | 138 | 45 | 1.0E-11 | ||
| CDD | 94 | 139 | 46 | 4.65631E-10 | ||
| MobiDBLite | 239 | 310 | 72 | - | – | |
| MobiDBLite | 250 | 271 | 22 | - | – | |
| MobiDBLite | 272 | 296 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0312200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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