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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0316800 |
| Transcript ID | LotjaGi2g1v0316800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|A0A151TGN5|A0A151TGN5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0316800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79207514..79213384) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCAGTTGTCCAAGATGCACTGGTACTGCATTTTCTCTATCTGCGTCTTTATATAGAAAGAGAATCTCTTCTGCTCAG AACACAACACTCCACACACAAAAGAGTACTTAGCAGAAAATAAAGCAGGAATGCATGTCTTCAAAATGAGAAGTGCAAAA GCATATAGATACCAATCCCTCTCCCTCTTATGGAGACTTGTTCCCTGCACATTCCTAGCACTACTTTGTTTATACTTCTA CCCTCACTTCAATAACTCATCTCCACCAACTGATCCGCATCCTTACTCCAGCTATATCACATATAACCCCTCTCTTTCTG CTCCTGTCCTTTTTCCTCCCCCTTCTTATTCAGGTATGCATATCCGTATACATGCATAATTTGATCTTGTTAAGGGATGC ACGTACCAATTATTCTAAATTAAACCTTAAGCATTCAACCAATACATATGAACAGTTTTATATATATTATATTTCTACAA AATCGTTCTTTAGCACAACAAGGTGTGCACGGCTGGGCACGATGGACCAATGCATTTTGAAAGATTTTGTATTTTATTTA ATCCATTAAAGTGTGATTTTGTTACTTTTTAAACGTACACAAATGAAGTGTGCACACATCGCGTTGAAGAGCATTGTGCT ATATAATAGTCCTCAAATATCTAACAAAAAAATGTTATATAACATAATAAAAACTAGATGAACATCATTCTTCTGAACAC CTAGCAATACTTGCAATTTTGTGGAGGTTTATCACTGCACAAATTGAAGAGTCATCCAAAACTAACACAAATTACTCGTG TTTATGGATGTCTGCTAAGGTGTTCACAGATCACAACAATTAATATAATGTTAGAATTCGATGCGGGTGATCTTTTTCTG AACTTTTCAAGTTTGCAGGTATTTTATTGGCAGAAAAGCATAAAGCTCCTCTTCTTGCCCTTTCTCCTAATTCAGGTATA TAAGCATGCAAAGTTTTGTCTTGTTAATAATATCATATAGAATGTTAGAATTGCAAGTCTTTTCTTTTCTTCTCCAATAA CAACATGATATTTTATTGATAGAAAAGGACAAAGGTTACAAGAAAGAATGTGACTACTTTAAAGGCAAATGGGTTCCTGA TAGGAGAGGCCCTTTGTACAACGGTACAACATGTGGCGATACGATCCAAAATACCCATAATTGCATGACCAATGGCAGGC CTGACATGGGGTATCTTTATTGGAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGATCCTATCAATTTTCTCCAA GTCGTTAAAAACAGGCACATATCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTCTCTTATTTGCATGTTATC CTCTGTTTCAACACCCAAACTTGACCTCTATAAAGGTATTGGTTGGTGGCACTTTCCTTCTCACAATGTAACCTTGTCAT CATATTGGGCACCATTTCTTGTGCAAGGGGTTCAAAGACAATTAACCGGTCCCGGACCACATCATAATACAATGTATTTG GATCAAGTTAATGAAAAATGGGCTTTGGATATGGATAAAATGGATTTAATTGTGCTTGGATTTGGGCATTGGTTTGCTGG CATTCCTTCACTTTACTATGAGGGTGATTCAGTTTTGGGTTGCCAAAATTTTCCTAATCTTAATTGCACCGATATTGGGT TTTATGTCCCGATAAGAAAGGCTTTGAGGACTGCTCTTAATAGCATAATTGAGAGGAAAGCAGCTAAAGGAAATGGAGTT GGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTGCTTGGGATAAAGGTGGCACTTGTTCAAAGAATACACC TTATAAAAAAGGGGAGAAGAAACTCGAAGAAAAGGATGTTGAGATTAGAAAGATTGGAATGGAAGAATTACAAAATGCAA AGGAAAAAGCCAAACAATTTGGAGGGTTTAGGTTTGAAGTACTAGATGTAACCGTATTAGCATCAATGAGACCAGATGGC CATCCCGGTGCTTATAGAAAGCCATTCCCATTTGCTAAAGGGGTTGAAAAGAATGTGCAGAACGATTGTACTCATTGGTG TTTGCCAGGGCCTATAGACACTTGGAATGAAATCTTTATTGAGATGATAAAGAACTGGGAGGAACAACTAAGAAGTGAAG AGTGAGATATTTCTCTTACATATCTTGTTAATAGAAAATTCTTGTTCTCACAATTGTTGCTCTTTCTTTTTTTTTTTATT TTAAAGTAAACTGAATTTCCATTAAAAGCCATTCGGCAAACAAGACATAACATCTGAAACAACATAAGCTAAAGCAGCAT CCGGAACCTCCTCCACCCAAACTAAATCAGTATAGGTTTCAGCGGTCCGGGCTAGGAAATCCGCAACAGTATTACCCGTG CGTCTAACAAAAGAGAAAGAAACAACATCAAAAGCACATAAAAGTGTGTGACACTCGCTAATAATAGAACTCAAATGGGA ACGCCCAACCTCCTTGGCTTTCCAATAATTATATAGCTGTAAACAGTCTGTCTCCAAACAAATCCTCCGGAAGCCAAGAT CAATAGCTAGCTGCATGGTCCACCTCAAGCTCAGTGCTTCCGCCAAAAGAGGTGAGATAGCGGATTTGGGATAGGAGCAT GCCGCCGCCATCACCTCCCCCCTACAGTTCCGTGCCACCATGCCCAACCCACTCAAGCCATTTCCGTGATAGGAAGCATC AAAATTGCACTTAATGATACCTGAAGCTGGCGGCTTCCACCTCGCGGGCAAGGCCACCGCCGGCGCTCTCATCTGGTCAC GCACTTGGACCTCCTCCATCAAGCAGCTGACCCGCCTAAGCACGGTGTCCACCTTGATCTGCTGCTGCTGGAAATTGCTA CGGTTCCTGGCCTCCCATATGGCGTAAGTCGTGGTCTGAACAAGAGCCATCACCCCGTCATCATGCAGCTCCACCACCGC TAACCAGAAATCTCGAAAAGTGGAGAAGGACGCCACTCGAAGTGCTAGCTGAGAAGCAAACCACACATGCTGCGCCGCTG GACAGTGGATGAATAAATGGTCCTCAGTCTCCCTTGCCGTTGCACAAAATGAGCACCCGGGGTCTACATCCACCTGCCGA CTAAATAGCCTCTCCTTCAATGGCAAATAACCTTGTATAGCCCTCCAACATGTCTCCTTGCATCGTGGTAAAGCTCGTGA GGCCCAGAAAAAATTCCAGAATCTGGGCTCAAGCATCACAGCCATGGATGATGATGTTTCAGCAAGCGATATCAGCTGGC TCATGAACTTGTACCCCTCCTTACACGTGTAATGGCCATTGGTTGTGGTTGGCCAATGAAATTCATCCGGGCTACCTGGC ACACCCAGCGGGATCGATAAAATGCTAGCTGCAGTGCTTGGATTAAAGACAAGCTGAATCAAGTCTGTCCTCCACCTGTG CAAATCATGATCAATAAGCATAGAAACATGTGTTAGTTGAAATTCATCAACAAGGTCTTGGCGGTAGATGAGGGGGGCAC CCCCTGGCACCCAATTTTCATTCCAAATATGAACCTGTGAACCATCACCAATTTTCCAAAGCCCTCCGCGCTCAAAAATC CAACTTGTTTTTAAGATACTGGTCCAGGCATAGCTTGGACGGTACCCCTTTTTTGCCTCCCGTAATGAAGTTCTATGGAA ATAGACCCCGTTAAAGACTCGAGCAACCAAACTTTCCGGGCGAGTGTATAAGCGCCACCAGTTCTTCCCAACTAGAGCCA TGTTAAAAGATTTAAAATCACGGAACCCAAGGCCCCCTTCCACTTTGTTCTTACATAAGTTCTTCCACTTTGTCCAATGT AGACCACGGCGGTTTGGGTCCCCACCCCAATAGAATCTCGCAATCATGCTATCAATATCGGTGCCCACTAGGGTGGACAA GTATCAAAATGGTCCATCAATAGACCACTCATCACAACCGTTGATATATAATATTTTAAGGTAGTGGTCTAGATTTTTCA CCTTGCACTTGCGAAACAGGTGAAATTGGTGGCCCTAACAGATTTGTAAAATTTGCTAAGGCACCCCTCTCTCTCATGTG ACTCCGCTTGTACTGTGACTTTCACTCGTCGCGCTCTCGCCGCCCCGAAGTCGCGGTGACCACGCCGCACCCCTCTGATA ACGCAACCATCTTGATATTCTCCTTCTGGTTGTCTTCTTTCTCCGCCATCACTGCTGACCCCTCCTGACACTCGTTGAGG AGCTCCAACTTGGCAGCCCGGTCTGGGAGAAGCGGGTTCTTCTTTCTGGTTACCGCGCCGCCCTGAAGCGCCACGACGAT GGGGTGCTTGAAATCGACAACTTCAATGGCTATGAAGGTATTGTATGGAGAATCCCGGCTCTGTTCATACTAAAATTGCT GGTTTTGTCAATTTACCTTAGGTTTGTAAGACTATGAAGCCTCAATTACTATTGTGTCAATTTGCTTCTAGCTCAGTATA AAGGTTGAATACTAAGGTCCCATTTCCCCATCTTGCTTCTGTTTCCTTCTTTGTCACCTCTTGGAGCCGGATCCATGTTC AGGATCAAGGTGAAAGGAAGGAATTGGAGAAAATTGCCCTGTTAAGATTGTTGGAAATTAGAGAAATACAATTACTATTG TTGAATATTAATTGCTACTACTCTTCCTAGAAGGTGTTGTGTTCATTTGTTACAACATGAGTTGCAGGTTTTGTCTGCAA AACAGAACTGTTTCTGGTGTGTGGTTTGGCACGCGGTGATTTGATCTTTGTGACTTGGAAGAAATGATTTGTTATTTAGG GGTGTGGCTTTGGAGCTGGACAGAGTTATGGAATTAATTCATATCAGAACTTGGAATTGACTAACAATGAAAATTAAATC GTTTCATCATTCTTTTTTCGAGTGGTGCACTAGCCCGACGTTGTGCTTAAAAGATGTGTGAGTGTGAGGATCGAGTAGTT GTTGGTGTGTGGGCTGCAGATTGCGTTTGACAGTGGATGATTTGGACAGTTGGTAGTTTTGGCATGGATTGTGTTTTGTC TTTGCTGAAGGTTGCTGTGCAGTAGCTTGTCTGGTTGCAGGTTCATGTTTTCTATTTGGTTGGCCAAGTGGTGCAGGTGT TTTTGCTGGTGGTGGTTTTTGGATTCTTGTAATTTGCTGGCGATGGTTTATTTGGTGGGAACTAGGGTGTTGTTGGGGTT CTTTAGTTTCGGTAGTTGCTGCTGTTTTCTTGCTGTTTTTTATTTATTTTTTGCTTGTTATCTTCTCTTTTGGTAGTGTT TTGCTTTCTTGTATTGGCATTCCTTTTTCATGTATTCAGGTTCTAGCACCCCCTGTGCTAGCTTTGAATGCAATTGGCTT ATCTAAAAAACTATTGTTGAATATTGTTAATCATGAAGAACTGCTTTGCTGACCTTAAAATATTTTCCTGCTATATTACT TGGTATTGGAGATAGCTGACGTTTCACATAAGATGTTTGCTGTCTTCTACTTCCCATGAGCTATTCAAATGCTTGCTGTC TTATGTTTCGTGTGACCAAACTTCAGGGAGAGATAGGATTACGAAATACACAAGACAAATACCCAGAGACTTATACGCCT GTATCATCCAGACAAGTATCATGGAACATGAAGATGTATTGCAGCTGCTTTAGGAGAGAATCAAAGCTGTCTGTAGTTGT TTTGGATCCACCAAGTGTGTACTGGAGGTGTAGGTCCCAACAGAGTTGAAGTTTCAGGACAGAACTTGCAAAGCTAATGC ACGAAGATTATGTAGAATAGGAATTATGTATTTATTGATTACACACTATTGAACTTCAATTTTGTACAATGTTGTAACAA TAGTTCTGATTGCAATAAAATGAGACTTTTA
CDS sequence (LotjaGi2g1v0316800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGTCTTCAAAATGAGAAGTGCAAAAGCATATAGATACCAATCCCTCTCCCTCTTATGGAGACTTGTTCCCTGCAC ATTCCTAGCACTACTTTGTTTATACTTCTACCCTCACTTCAATAACTCATCTCCACCAACTGATCCGCATCCTTACTCCA GCTATATCACATATAACCCCTCTCTTTCTGCTCCTGTCCTTTTTCCTCCCCCTTCTTATTCAGGTATTTTATTGGCAGAA AAGCATAAAGCTCCTCTTCTTGCCCTTTCTCCTAATTCAGAAAAGGACAAAGGTTACAAGAAAGAATGTGACTACTTTAA AGGCAAATGGGTTCCTGATAGGAGAGGCCCTTTGTACAACGGTACAACATGTGGCGATACGATCCAAAATACCCATAATT GCATGACCAATGGCAGGCCTGACATGGGGTATCTTTATTGGAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGAT CCTATCAATTTTCTCCAAGTCGTTAAAAACAGGCACATATCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTC TCTTATTTGCATGTTATCCTCTGTTTCAACACCCAAACTTGACCTCTATAAAGGTATTGGTTGGTGGCACTTTCCTTCTC ACAATGTAACCTTGTCATCATATTGGGCACCATTTCTTGTGCAAGGGGTTCAAAGACAATTAACCGGTCCCGGACCACAT CATAATACAATGTATTTGGATCAAGTTAATGAAAAATGGGCTTTGGATATGGATAAAATGGATTTAATTGTGCTTGGATT TGGGCATTGGTTTGCTGGCATTCCTTCACTTTACTATGAGGGTGATTCAGTTTTGGGTTGCCAAAATTTTCCTAATCTTA ATTGCACCGATATTGGGTTTTATGTCCCGATAAGAAAGGCTTTGAGGACTGCTCTTAATAGCATAATTGAGAGGAAAGCA GCTAAAGGAAATGGAGTTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTGCTTGGGATAAAGGTGGCAC TTGTTCAAAGAATACACCTTATAAAAAAGGGGAGAAGAAACTCGAAGAAAAGGATGTTGAGATTAGAAAGATTGGAATGG AAGAATTACAAAATGCAAAGGAAAAAGCCAAACAATTTGGAGGGTTTAGGTTTGAAGTACTAGATGTAACCGTATTAGCA TCAATGAGACCAGATGGCCATCCCGGTGCTTATAGAAAGCCATTCCCATTTGCTAAAGGGGTTGAAAAGAATGTGCAGAA CGATTGTACTCATTGGTGTTTGCCAGGGCCTATAGACACTTGGAATGAAATCTTTATTGAGATGATAAAGAACTGGGAGG AACAACTAAGAAGTGAAGAGTGA
Protein sequence (LotjaGi2g1v0316800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVFKMRSAKAYRYQSLSLLWRLVPCTFLALLCLYFYPHFNNSSPPTDPHPYSSYITYNPSLSAPVLFPPPSYSGILLAE KHKAPLLALSPNSEKDKGYKKECDYFKGKWVPDRRGPLYNGTTCGDTIQNTHNCMTNGRPDMGYLYWRWKPRRCNLPRFD PINFLQVVKNRHISFVGDSLARNQLESLICMLSSVSTPKLDLYKGIGWWHFPSHNVTLSSYWAPFLVQGVQRQLTGPGPH HNTMYLDQVNEKWALDMDKMDLIVLGFGHWFAGIPSLYYEGDSVLGCQNFPNLNCTDIGFYVPIRKALRTALNSIIERKA AKGNGVGVIVRTFAPVHFEGAWDKGGTCSKNTPYKKGEKKLEEKDVEIRKIGMEELQNAKEKAKQFGGFRFEVLDVTVLA SMRPDGHPGAYRKPFPFAKGVEKNVQNDCTHWCLPGPIDTWNEIFIEMIKNWEEQLRSEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 19 | 38 | 20 | - | – | |
| Phobius | 20 | 37 | 18 | - | – | |
| Phobius | 38 | 460 | 423 | - | – | |
| PANTHER | 88 | 452 | 365 | 1.3E-170 | – | |
| PANTHER | 88 | 452 | 365 | 1.3E-170 | ||
| Pfam | 101 | 155 | 55 | 1.8E-21 | ||
| Pfam | 156 | 448 | 293 | 1.8E-83 | ||
| Coils | 442 | 460 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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