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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0316900 |
| Transcript ID | LotjaGi2g1v0316900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1J5C7|I1J5C7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0316900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79218512..79220247) extracted from Lotus japonicus Gifu genome v1.2.
AGTACTGCATATTTTTCTATCTGCAACTTTATATAGAAAGAGAATCTCTTCTCCTCAGAACACAGTACCACACACAAAAG AGATCATACTTAGCAGAAAATAAAGAAGGAGGGAATGGAGGCCTTCATCAAAATGAGAAGTGCAGAAGCATTCAAATTCC AATCCCTCTCCCTCATCTGGAGACTTATTCCCTGCACATTCCTATCACTACTTTGTTTATACTTCTACCCTCACTTCAAT CATCCATCTCCACCAACTGATCAACGTCATCATTCCTACCCCTCCTTTCTATCTGCTCCTCTCCTTTCTCCTCCTCTTTC TTATTCAGGTATATATACACATATATGTATGCATATTATTTTTCAGACCCAATTCGTGCACACCCATGTACACCTTTTTC TATTCTCTTAATCCCTTTTTTCATGTCACATCGATCACATATAACATCTATTACTTTTCTATTTCCCGTTTATATCTTTA GGTGTCTACATGAAACATTGTTGATGTTTTTTTGTCTAGGTAACACTGTTATAAACTTATAATGGTAGAACTGCGTGCAT GTGGTCTTTTTCTGAACTTATTAAGTTAATTAGCAGGTGTTTTATTGGCAGAAAATGACAAAGGTTACAAGAGACAATGT GATTACTTTAACGGCAAATGGGTTCCTGATAGCAGAGGCCCTTTGTATAATGGTACAACTTGTGGTACGATCCAAAAAAG CCTCAATTGCATCACCAATGGCAGGCCAGACTCTGAATATCTTTATTGGAGATGGAAACCAAGGAGGTGCAATCTTCCAA GGTTTGAACAAGAGACTTTTCTCCAACTCATTGAGAACAAGCATATAGCTTTTGTTGGGGATTCTCTAGCTAGGAACCAA TTAGAGTCCCTTCTTTGCATGTTAGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGGTTTAGGTTGGTGGCATTT TCCTTCTCACAATGCAACCTTATCATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAAGACAACTCAAAGGGCACG GGCAACGTCACAATACAATGTTTTTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAATCAAATGGATTTAATTGTG CTTGGATTTGGAAATTGGTTTGTAAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTTGGGTTGTCAGAACTTTCC TAATCATAATTGCACTGATATTGGGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTCTTAATAGCATAATTGAAA GGAAAGCAGCCAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTTAAAGGTAGTTGGGATAAG GGCGGTATTTGTTCAATGACTAAATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGATGCTGAGATTAGAAAGAT TGGATTGGAAGAATTGAAAAATGCTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGTTCGAGGTGCTAGATGTAA CCAAATTAGCATCAATGAGACCGGACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTTGCGAAAGGGGCCGTAAAG AACGCGCGAAATGATTGTACTCATTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGATTTTTCTTGAGATGATGAA GAAGTGGAAAGAATAGCTCTTTTTTTTTTTGAGATGTGGGAGGAATAGCTAATGAG
CDS sequence (LotjaGi2g1v0316900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCTTCATCAAAATGAGAAGTGCAGAAGCATTCAAATTCCAATCCCTCTCCCTCATCTGGAGACTTATTCCCTG CACATTCCTATCACTACTTTGTTTATACTTCTACCCTCACTTCAATCATCCATCTCCACCAACTGATCAACGTCATCATT CCTACCCCTCCTTTCTATCTGCTCCTCTCCTTTCTCCTCCTCTTTCTTATTCAGAAAATGACAAAGGTTACAAGAGACAA TGTGATTACTTTAACGGCAAATGGGTTCCTGATAGCAGAGGCCCTTTGTATAATGGTACAACTTGTGGTACGATCCAAAA AAGCCTCAATTGCATCACCAATGGCAGGCCAGACTCTGAATATCTTTATTGGAGATGGAAACCAAGGAGGTGCAATCTTC CAAGGTTTGAACAAGAGACTTTTCTCCAACTCATTGAGAACAAGCATATAGCTTTTGTTGGGGATTCTCTAGCTAGGAAC CAATTAGAGTCCCTTCTTTGCATGTTAGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGGTTTAGGTTGGTGGCA TTTTCCTTCTCACAATGCAACCTTATCATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAAGACAACTCAAAGGGC ACGGGCAACGTCACAATACAATGTTTTTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAATCAAATGGATTTAATT GTGCTTGGATTTGGAAATTGGTTTGTAAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTTGGGTTGTCAGAACTT TCCTAATCATAATTGCACTGATATTGGGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTCTTAATAGCATAATTG AAAGGAAAGCAGCCAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTTAAAGGTAGTTGGGAT AAGGGCGGTATTTGTTCAATGACTAAATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGATGCTGAGATTAGAAA GATTGGATTGGAAGAATTGAAAAATGCTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGTTCGAGGTGCTAGATG TAACCAAATTAGCATCAATGAGACCGGACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTTGCGAAAGGGGCCGTA AAGAACGCGCGAAATGATTGTACTCATTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGATTTTTCTTGAGATGAT GAAGAAGTGGAAAGAATAG
Protein sequence (LotjaGi2g1v0316900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAFIKMRSAEAFKFQSLSLIWRLIPCTFLSLLCLYFYPHFNHPSPPTDQRHHSYPSFLSAPLLSPPLSYSENDKGYKRQ CDYFNGKWVPDSRGPLYNGTTCGTIQKSLNCITNGRPDSEYLYWRWKPRRCNLPRFEQETFLQLIENKHIAFVGDSLARN QLESLLCMLAPASTPKLDLSKGLGWWHFPSHNATLSLYWAPFLVQGVERQLKGHGQRHNTMFLDQVNESWAMDMNQMDLI VLGFGNWFVNIPSVYYEGGSVLGCQNFPNHNCTDIGYYVPIRKALRTALNSIIERKAAKGNGGGVIVRTYSPFHFKGSWD KGGICSMTKFYQKEEKILEQRDAEIRKIGLEELKNAKEKANKNFRKFRFEVLDVTKLASMRPDGHPGAYRKPFSFAKGAV KNARNDCTHWCLPGPIDTWNEIFLEMMKKWKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 38 | 19 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 39 | 432 | 394 | - | – | |
| PANTHER | 62 | 430 | 369 | 4.6E-169 | – | |
| PANTHER | 62 | 430 | 369 | 4.6E-169 | ||
| Pfam | 80 | 132 | 53 | 8.9E-23 | ||
| Pfam | 133 | 426 | 294 | 1.1E-81 | ||
| Coils | 350 | 370 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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