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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0328900 |
| Transcript ID | LotjaGi2g1v0328900.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80420163..80423568) extracted from Lotus japonicus Gifu genome v1.2.
AGTCTTGGAGGCCATGTGAACTGAAGATCTTGCATAAATTTATTCAATCTAAATCACAAGTTATATTAAAATAATAACAA AGATATAAAAATTCAAACTATATTCATTTGAATACTAGTTTAGGCTTTTGATTGGTTAAAAGAAATAGTCAAACAGACAC TGTACTGTATTTATGCAAGAATAATTCTGAAATGTTACCTATCCAGGCTGGTGCATCAGTTATTTGTCTCTAGTTAGTTT CTGATTTTTTGTCTTTAAAACATTATGCATGTATTTGTCAGGATCTTGAACAACTTGCTGCAGAGCTAAGGGCAGACATT GTACACACTGTTTCCAACTCTGGTGGGCATCTTAGCTCAAGCTTAGGAGTAGTGGAATTAACAGTGGCTCTGCATCATGT TTTCAACACCCCAGAAGACAAGATTATATGGGATGTGGGGCACCAGGTCAGTCTATGATTCTCTTCTTTGTTCCTGTTTC TGAATAGAAATCAAATGGAATAATAAAAAGGTAACTTAAACTGCATTCATGCAGTGAAATTTGCAAATTTGCTCTTACAA AGAAATTTATGGCATGTTCGATTACTGGTTTGTGAAACATAAACATGAAAGAAGGATTTGATTTTAACAATTAAAAATTG AGGGGCTATCAAAAAATTATTGGGGGATCAAAATCATACATCAACCGTATTAAAGGGACCAAAAGCGCAATTAAGAAAGA AAAACTTGTTTGGTAGGAATTGTATTGAAAAATTAATTTTAAAAATAGATTTTGTTTTTAGTTTTTAAAACTAAAATTTA AAAAATATTTCATGGCTTTTTCTGTTTTTAATTTTCCAGCCATAAGTTTTTAACTTCACAAAATATCTCATTCAAGCCGT TTTTCTTATGAAAAATATTTTTTTAAACTTGTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTAAAA ATTGATAAGAGAACCAAAGAAGCCCTTCATCTTTATTTCCCTTTTTACATGTCTTTTCTATAGCTGTCAAGTGTCACTTA TTGTGTAAGATGGTCTCAGATGCAATAAAATTGCAGGCATATGCACACAAGATTCTCACAGGTAGAAGGTCTAGGATGCC CACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAGGGCATA GTTCTACAAGTATATCTGCTGGTCTTGGTAAGATAATCTTAAACATCAAACATTTTATGAAACACGTGCACACATCCAAG AATCTCAAAAGGCTGGACAACAAACCTCAATGTTCTCAGTTTTTGTACAAAAAATTGTAGGCATGGCAGTTGCAAGGGAT ATACTAGGAAAGAACAACAGTGTCATCTCAGTGATCGGAGATGGGGCAATGACCGCTGGCCAAGCTTATGAAGCCCTGAA CAATGCAGGATTCCTTGACTGTAACATGATAGTTATACTTAACGACAACAAGCAAGTCTCTTTACCAACTGCTACAGTTG ATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAGCCAAAATTCAAGCAAGTACAGAATTTCGCAAACTCAGA GAAGCTGCAAAAGTATACTTCTCAAACTTTTCTTATAAAAAAGAACTTAGGGTTTCATTTCTTGTGTCAAATTTCATTAG ACCGTGGCATCTGACTCCAATTTTATTTGATAAAGACCATTACAAAGCAAATAGGAGGACAGACGCACCAGGTTGCGGCA AAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTTTTTGAGGAGCTCGGCTTATACTACATCGG CCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGTGAAGGCAATGCCTGTCCCTGGTCCAATTT TGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAGCTGCTGATAAAATGCACGGTGAGAATCGA ACTTTATTTATTTTGTCTTAACAGGATTATTAGCAGAAACTCTGAAAGGAGGCTCATATTGTCACACTTTCAGGTGTTGT TAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCATATACCCAGTACTTTGCTGAGTCAT TGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGGTGGGGGAACAGGTCTAAATTATTTC CAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCATTACATTTGCAGCTGGATTAGCCGC AGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTTAGCCAACAACAATAGA CAAATATAGCAGATACTAATTTTATTCTAGTGTTTCTGTTAAACTGTCACAAATCATCTCACATTTTGTAATTTGAATTG TGTATGAAGGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATTGACCGAGCTGGTTTGGTTGGAGC TGATGGACCAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTCCATCTG ATGAAGCTGAACTGATGCACATGGTTGCGACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGC AACGGGATTGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTGAGGTTAGCATGAGTAACGAACAGGCATTTTC CATACTTAATGCTAATAGATAAGTAATTAAATGGGGATTTTTTTGCTTATATAGATAGGAAAGGGCAAAATTCTGACAGA AGGCAGCAGAGTTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTCGAAGAACATG ACATTTCTGTGACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAGGAGCAC GAGTTTGTCATCACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGCTGGCCT CCTGGATGGACCGCTGAAGGTAAACCTTCCTTTTATGTCGACAGGTCACTCTTTCCATGATTTTTGTTTTCAGCTTCTTA GTTCTACTACATGGCTCCATTTCTCTAGTTGGTAATCCTCATTTGACATTTTCCTGCAGTGGAGAGCAATGACACTTCCT GACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGGGACTTACATCAAAGCATATTGTAGCAACAGT CTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA
CDS sequence (LotjaGi2g1v0328900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAGG GCATAGTTCTACAAGTATATCTGCTGGTCTTGGCATGGCAGTTGCAAGGGATATACTAGGAAAGAACAACAGTGTCATCT CAGTGATCGGAGATGGGGCAATGACCGCTGGCCAAGCTTATGAAGCCCTGAACAATGCAGGATTCCTTGACTGTAACATG ATAGTTATACTTAACGACAACAAGCAAGTCTCTTTACCAACTGCTACAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCT CAGTAGTACTTTAGCCAAAATTCAAGCAAGTACAGAATTTCGCAAACTCAGAGAAGCTGCAAAAACCATTACAAAGCAAA TAGGAGGACAGACGCACCAGGTTGCGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTT TTTGAGGAGCTCGGCTTATACTACATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGT GAAGGCAATGCCTGTCCCTGGTCCAATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAG CTGCTGATAAAATGCACGGTGTTGTTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCA TATACCCAGTACTTTGCTGAGTCATTGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGG TGGGGGAACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCA TTACATTTGCAGCTGGATTAGCCGCAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATAT GATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATTGACCGAGCTGGTTTGGTTGGAGCTGA TGGACCAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATG AAGCTGAACTGATGCACATGGTTGCGACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGCAAC GGGATTGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTGAGATAGGAAAGGGCAAAATTCTGACAGAAGGCAG CAGAGTTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTCGAAGAACATGACATTT CTGTGACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAGGAGCACGAGTTT GTCATCACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGCTGGCCTCCTGGA TGGACCGCTGAAGTGGAGAGCAATGACACTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAG CGGGACTTACATCAAAGCATATTGTAGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA
Protein sequence (LotjaGi2g1v0328900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTIRKTLGLAGFPKRDESVHDAFGTGHSSTSISAGLGMAVARDILGKNNSVISVIGDGAMTAGQAYEALNNAGFLDCNM IVILNDNKQVSLPTATVDGPATPVGALSSTLAKIQASTEFRKLREAAKTITKQIGGQTHQVAAKVDEYARGMISASGSTL FEELGLYYIGPVDGHDIEGLVTILEKVKAMPVPGPILIHIVTEKGKGYPPAEAAADKMHGVVKFEPATGRQFKPKSSTLS YTQYFAESLIKEAEIDNKIVGIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAITFAAGLAAEGLKPFCAIYSSFLQRGY DQVVHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDITFMASLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGN GIGATLPLNNKGTPLEIGKGKILTEGSRVAILGYGSAVQQCLHAAQILEEHDISVTVADARFCKPLDIDLIKLLAKEHEF VITVEEGSIGGFGSHVSQFLSIAGLLDGPLKWRAMTLPDRYIEHGSPQDQMDEAGLTSKHIVATVLSLLERPKEALLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 559 | 559 | 0.0 | – | |
| Pfam | 1 | 202 | 202 | 1.1E-64 | ||
| PANTHER | 1 | 559 | 559 | 0.0 | ||
| TIGRFAM | 2 | 549 | 548 | 2.7E-191 | ||
| SUPERFAMILY | 3 | 301 | 299 | 8.96E-52 | ||
| SUPERFAMILY | 216 | 400 | 185 | 1.51E-60 | ||
| Gene3D | 236 | 408 | 173 | 1.0E-65 | – | |
| SMART | 239 | 404 | 166 | 8.1E-68 | ||
| Pfam | 239 | 400 | 162 | 5.8E-41 | ||
| CDD | 245 | 398 | 154 | 5.81396E-72 | – | |
| ProSitePatterns | 345 | 361 | 17 | - | ||
| SUPERFAMILY | 413 | 549 | 137 | 1.7E-36 | ||
| Gene3D | 418 | 550 | 133 | 3.4E-36 | ||
| Pfam | 418 | 541 | 124 | 6.0E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi2g1v0328900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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