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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334000 |
| Transcript ID | LotjaGi2g1v0334000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT4G17920.1 RING/U-box superfamily protein; Swiss-Prot: sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29; TrEMBL-Plants: tr|A0A1J7I971|A0A1J7I971_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81006830..81008403) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAAAAATCTGAAAAAAAAAACAAGAATAAAAGACAGAAAAAGAAAGAAATTAAAACCTCACCACTTTAACTCTCAT CGTTACTTTCCCTATTTTGCTTCCATCATTCGCCAACAACACTAGCTACGTTTTGTTTTGTGCTTAAACTTCTCTCATCC ATGAAACCTCCACCATAACAAAGCTCTTTCTCAAACCACCTAGCTTGTGTAGCAAGCAACATATATCCATTCATATTCTT CATCATCTTTTGCTATGTCTTCCCCAAAAGCAGAGAATTTTGAAACTCCACGACCGCCACCCGTAGTTACCTCCTCCTAC ACCACTCTCCCGGCGCTAGTCGCCTTCGCCCTTCTCGCGGTGGTGGTCTGCTTCGTCGGCTTCGGCATCCTCTACTCCTG CCGGTGTTGTTTCCTCAGCGTCATACACACGTGGGCCTTCCAACAATCAGCCTCCGGCACCACCCTCGTCCGCCTCTCCC GCAACAACAACAACGCCTCATCATCGTCTCCTAATTACAGAGGCCTCGACCCTTCTCTCCTGCAAACGTTCCCCACTTTT CTCTACGCCTCCGTCAAGAACCTCCGCAAGGGGAAGAATTACAGCCTCGAATGCGCCATCTGTTTGCTGGAATTCGAGGA CGACAGTCTCCTCCGCCTCCTCACCGCCTGCTGCCATGTGTTCCACCAGGACTGCATTGATCTCTGGCTCCGGTCTCACA AGACGTGTCCCGTTTGTCGCGTGGATCTCGACTCACCGGCCAACTTAGCGTCACCAAAACTTCAGGAGGTTGTGTTGGAG GACGATCATAATGACAATGTTGTAGAAGAGAGAAGAGGTACTGGTGATGATGTGTGCATTGAGGTGAAAGAAGGTGAAGG AGATCATCATCATGGTGGTGATGATAATGATGAGAGGTTGTTTCCACGGTCACACTCTACCGGGCATTCGGTGGTTATGA TAAGAGGAGGAGCCGGAGAACAAGATGATAAGTACACGTTGAGGTTGCCGGAGCACGCGGCGTTGAAAGTTGTTAGAGGA GGGCGTAACTGCACTAAGAGTTGTTCCAGTTACAAGGATATGGCTGCTCCTTCAGCTGCAGCTGCTGCTGCACCTTGTAG TAATTGTGGTTATGTACAGAGTCAAACTGTGTTTGGTTGCTCTTCACGTAGCACTGCAGAAAATACTTGAGTTTCTTACT CCTCTATTCTATTGTTTCTTTTTATTTTCTTAAAGTTAAAATCCTATATGTGCTTTAAGATAGAAGATTGTAGATTATTT TATTCTTAGTATAGCTAGTATATGGAAGTAATTAGATGAACTAGGTTTAATTAGTAGCGAGACATTTAGCTTTAATTTGA TTAAGAGTTTTTTTTTTGTTACATTTGGAATAGTAGCTTTGTAACATTTACCAACAAGATTTTAGCCCAAAGTGAAATTA AAGAGAAAGATGTGCCCAGATTTAAGTTACTGTGGTTAAGACTTTCCTGCGGCTGATATATATTTGAATTGCAAGCTTTA ATTCTTTGTATTTCCTCCCATCCTGCATTACTCCTTCTGAATAATCAGCTCTTA
CDS sequence (LotjaGi2g1v0334000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCCCAAAAGCAGAGAATTTTGAAACTCCACGACCGCCACCCGTAGTTACCTCCTCCTACACCACTCTCCCGGC GCTAGTCGCCTTCGCCCTTCTCGCGGTGGTGGTCTGCTTCGTCGGCTTCGGCATCCTCTACTCCTGCCGGTGTTGTTTCC TCAGCGTCATACACACGTGGGCCTTCCAACAATCAGCCTCCGGCACCACCCTCGTCCGCCTCTCCCGCAACAACAACAAC GCCTCATCATCGTCTCCTAATTACAGAGGCCTCGACCCTTCTCTCCTGCAAACGTTCCCCACTTTTCTCTACGCCTCCGT CAAGAACCTCCGCAAGGGGAAGAATTACAGCCTCGAATGCGCCATCTGTTTGCTGGAATTCGAGGACGACAGTCTCCTCC GCCTCCTCACCGCCTGCTGCCATGTGTTCCACCAGGACTGCATTGATCTCTGGCTCCGGTCTCACAAGACGTGTCCCGTT TGTCGCGTGGATCTCGACTCACCGGCCAACTTAGCGTCACCAAAACTTCAGGAGGTTGTGTTGGAGGACGATCATAATGA CAATGTTGTAGAAGAGAGAAGAGGTACTGGTGATGATGTGTGCATTGAGGTGAAAGAAGGTGAAGGAGATCATCATCATG GTGGTGATGATAATGATGAGAGGTTGTTTCCACGGTCACACTCTACCGGGCATTCGGTGGTTATGATAAGAGGAGGAGCC GGAGAACAAGATGATAAGTACACGTTGAGGTTGCCGGAGCACGCGGCGTTGAAAGTTGTTAGAGGAGGGCGTAACTGCAC TAAGAGTTGTTCCAGTTACAAGGATATGGCTGCTCCTTCAGCTGCAGCTGCTGCTGCACCTTGTAGTAATTGTGGTTATG TACAGAGTCAAACTGTGTTTGGTTGCTCTTCACGTAGCACTGCAGAAAATACTTGA
Protein sequence (LotjaGi2g1v0334000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPKAENFETPRPPPVVTSSYTTLPALVAFALLAVVVCFVGFGILYSCRCCFLSVIHTWAFQQSASGTTLVRLSRNNNN ASSSSPNYRGLDPSLLQTFPTFLYASVKNLRKGKNYSLECAICLLEFEDDSLLRLLTACCHVFHQDCIDLWLRSHKTCPV CRVDLDSPANLASPKLQEVVLEDDHNDNVVEERRGTGDDVCIEVKEGEGDHHHGGDDNDERLFPRSHSTGHSVVMIRGGA GEQDDKYTLRLPEHAALKVVRGGRNCTKSCSSYKDMAAPSAAAAAAPCSNCGYVQSQTVFGCSSRSTAENT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 12 | 260 | 249 | 1.9E-55 | – | |
| PANTHER | 12 | 260 | 249 | 1.9E-55 | – | |
| Phobius | 25 | 47 | 23 | - | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 48 | 311 | 264 | - | – | |
| Gene3D | 77 | 168 | 92 | 5.7E-19 | ||
| SUPERFAMILY | 113 | 178 | 66 | 7.57E-20 | – | |
| CDD | 119 | 162 | 44 | 1.47999E-15 | – | |
| Pfam | 119 | 162 | 44 | 1.2E-13 | ||
| SMART | 120 | 161 | 42 | 7.7E-6 | ||
| ProSiteProfiles | 120 | 162 | 43 | 12.578 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0334000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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