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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0336500 |
| Transcript ID | LotjaGi2g1v0336500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox leucine zipper protein; TAIR: AT5G46880.1 homeobox-7; Swiss-Prot: sp|A2ZAI7|ROC3_ORYSI Homeobox-leucine zipper protein ROC3; TrEMBL-Plants: tr|A0A151THF9|A0A151THF9_CAJCA Homeobox-leucine zipper protein ROC3; Found in the gene: LotjaGi2g1v0336500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81368023..81373627) extracted from Lotus japonicus Gifu genome v1.2.
AGAGACCAACATAGGAAGATAAGGTAAAGGACCAGTGTGTGCGTGTGAAATCAACTAAAGATCATCATCATCCTCCAACT CCAAATTCCTCTCCTTCCTTTTCACAACCACCACTTCACTCTCCTTCCTCATGCTCTTGCACCAGGTAATGCATGGTATC TTGTATAGCCTAAACTTTTTTTTTACTATGGTTTTGACATTTTTAAAAAATCTCTGAAAGATCCTGGACCATGATACTGT CTCAGATTTTTGTGGCTTTGGCTGTCTGAGGAATGTTTTAATCTTACTTTTTTAGGGCTTGAATGAGAGTGTTTTGTTAG TTTGAAGCTTTTACTATATTTGAGGTTGTCTAAATCACTCACGAGAGTGTGATTTGTGATCACACAGGTTGGTCTCACTC TCCACTGAAGCTAGCTAGCAAGGTCTTTCAGGCACAGAAGTGAAGTGTGTGTTTTGAAGAGAAAAAGGAAAAAAAAATGT ATGGGGATTGCCAAGTCATGTCAGATACTCTCTTCTCGTCACCGATCCAGAACCCTAACTTCAACTTCATCTCCACCATG CCTTTTCACCCTTTTCCTCCCATGGTATGATGCTACTATATAGTAGTAAACCTTTTTACATGACTTTATTTTGTTATGAT CAAATCCCATTCTCCTCATCATCTTCTAACTTTTTTTCACAGAAAGAAGAAGATTCTATGTTGGGAGGGAAAGAAGAGAT GGAAAGTGGTTCTGAAAGTGAACAAGTTGAAGACAAGTCCGGGAACGAGCAAGAGATCACTGAACAGCCTAAGAAAAAAC GTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCGTATATACATATTTCTCTAGATCTCTCTTCTAGTTTT TTTACTATGAAACAAATCTTTTTTGTTTTTTTCCCACAAAAAAAAAACATCTAACAATTTGGAAGCCTTAAATTTTGCTC ATTGCATGGGTAACGCTTTATTCTTGTTCTTAACAGTTTGTTCAAGGAATGTCCACACCCGGATGATAAGCAAAGGATGA AACTAAGCCATGATCTAGGCCTAAAACCACGCCAGGTCAAGTTCTGGTTCCAAAACCGCCGAACCCAGATGAAGGTACGT CGTCATCAAAATCAATTATAAAACTCATAAGCTATTAAAAAACTGATTCTCTCTCACAATAAATTTTAGAATACCAAAAC CAAAATGTACTAAATCAGCTATTGCACACACACACTTTCCTCACCTTTACCATTAAGACTACCATTAGTAATTTCACATT TGACTATATATCAAAACCCTAAATAAACTGGCTTCATAACTCCACCAACGTCTTGCACGTTTCCCAATGCAAACCGCGTT TTCTTCTTAATTCGGTTTGCATTGAAGCGCACTTTCCTATGCCCTAATAAAGAGCTACAGCCTACAGAGAGAGTCAATGA ATGAATATTGAATAGAGAAACGAAACAAGCAGAAGAAGAGACTTATGGCGTTGTCCATTCCATCATACCAGTCTGTATTC CATAAATGTACGCATTTAACCCTACCTGTCACATGTGGTCTCCAACGGTACTCCTCATATATATTTATTGCCAAGTATTA TTACAACAGTTCTAGGGTTACATTACATTGAAGGGTTTAATTTGGTGGGTCTTGGTTCCTTCATTTTCAATATAACTTTT TAAAAGCATCATATATATATATATATATATGTATCATCATTCATTACTATAGATTATTAAACATTTAATTATATGATGGA CTTTATGTCATGCATTATTTGTTATTTTAATTTGGGAATATAGGCACAGCAAGATCGATCAGATAATGTGATACTTAGAG CTGAGAATGATAGTCTAAAGAATGAGAACTATCGGTTACAAGCAGCGCTGCGTAGTATTATATGTCCAAATTGTGGTGGC CCGTGCATGATGGGCGCGGAAATGGGCTTGGATGAACAGCAGCTTCGCCTTGAAAATGCTCGGTTGAGAGAAGAGGTATT TCATTACTCTAATTTGAATACAAACATTGAAGTCGTGCTGGATAACATGATATGATATGCCTTGCTTTTCAATTAATGAA CCATTTACCAATCCCTTTTAAGATTTTGGAAACAAGTAGTGGGTATGGTATGGGTGTTTCAACCATATCATTAAGACAAG TTTACATCATATTCTGATTAGTTAAAAGTTTTTTCGACACCAAAATTAACTCACACCAAGAGAGTGACCGACAAAAAAGA TAGAAATAGGGAAATGAAAGATATGATAAAAGGTAAAGAAATGATAAAACGTACGAAACAGTCCATCTATTTCAACTAAC TATTGCATTTCGTTTCGGCCTATTTAGCAAAGTTCAAGGGGGTATTTGTCAAAATAGAGTGAAAACTTGAACTTTCAACT TTCTAATCTCCACCCAATGGCGGATTGGGTGAACCGTTTTTGAATGTCTGAGTAGAATTAGTGATATTAAAATTAAATGC CAATTGGTTATGATTTTTATTTTCAATCTTAATTTATAAAATTTTCATCTTATCTTTATTTTAGTTCCCATTTTCAATTT CTTGCTCTAAAAATGAAAATAAATCAAACAGAACCTTAGGAGAAAACCTGAATTAGGTCATCTATTAAGTACATGATGAA TGTATGATTTTACTGTTCACAAGGTGAATGAATGTTTTGCAGTTGGAACGTGTATGTTGTATCACTTCAAGATACACTGG TCGCCACATCCAGACTATGGCAGCTTCTCCTGCTCTCATGGCTCCTTCATTGGATCTGGACATGAACATCTACTCAAGGC ACTTTGGGGAAACCCTTCCTCCCTGCACAGAAATGATTCCTGTGCCAATGCTACCTCCTGAAGCTTCACCATTTCACCAA GAAGACGGTCTGTTAATGGAAGATGAGAAGCCCCTTGCCATGGAGCTTGCAGCGTCTTCAATGGCTGAGCTAGTGAAGAT GTGCCGCACAAACGAGCCACTGTGGATCCGAAGCAGTACTGATAGTGAAAGGGAAGTGCTTAATTTTGAAGAGCACGCGA GGATGTTTCCATGTCCTCTGAGCCTAAAGCACCAAAGTGAAATGAGGACTGAAGCTACCCGTGACACTTCTGTGGTTATA ATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCAGTGAGTGATTCATTATTGAATTGTTGAGAATCTTTTTCATT CAATTCCCTACTTTTTCTCTTGACTCATGTGCCCTTCATTCTATATTGTTGTAGCAAAAATGGATGGAGCTGTTTCCTTC AATTGTTTCTAGCGCAAAAACTGTCCAAATTATATCTTCAAGTGCTTCTGGTCATGCAAATGGGACACTTCAGCTGGTAG GTTTCGAATTGCTAAGTAAATACTGAATCTCTGGCTTTAAATTTTGATTGAAGATTGATATGTATATTGTTTATTTTTCA CAGATGTATGCAGAATTACAAATGCTTTCTCCTTTGGTCTCCACACGCGAGACTCATTTCCTTCGGTATTGTCAACAAAA CGCTGAGGAGGGAACCTGGGCCATTGTTGATTTCCCAATTGATAGCTTTCAACAAAATTTCCACACTTCTTATCCCAGAT ACTGCAGGAGGTGTTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAATTAACTCACATTCCTAATCC TTGTTATGAGCTTGAACTTTTACAAAGTTGGTCTCTCCTAAATCTTTAGGGTGAAAATGTTTTGGTTATCCTTGCAGGTA ACATGGGTTGAGCATGCAAAAGTAGAAGAGAAGCCTATTCATCAGATATTCTGCAACTATGTGTATAGTGGAATGGCATT TGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCCAGAAACATATCAGATC TTGGAGGTTCTCAACATCTTACCTACCATTATGAATTTAACTTAACTGCATTGACTAAGCTAGATTAAGACTACAAAAAC AAATATATAGTTTTACTATAACATATTTCTTCTGTATTGTAGTGATACCTTCCCCAGAAGCAAGAAAGAACTTGATGAAA CTAGCTCAGAGAATGATAAAAACCTTCAGCCATAACATGAGCACCTCTGGTGGTCAATCATGGACTGCCATATCAGATTC CCCTGAAGACACAGTTAGAATCACAACTAGGAAAGTCACAGAGCCTGGCCAACCCAATGGGGTGATTCTCAGTGCTGTTT CAACCACCTGGCTTCCCTATTCTCACACTAAGGTCTTTGATCTTCTAAGGGATGAACGCCACAGATCACAGGTATCACAA TTCACAAACCATTTATAATCACCATCTACTGCACCTGTTAACTAAACAATAACCAACTAATTCATTTTGATTTTGGTTTT GAAGATGGATGCTCTTTCGAACGGGAACTCGTTGAACGAAGTGGCTCACATTGCAAACGGCTCGCATCCTGGAAACTGCA TTTCCCTTCTCCGCATAAATGTAAGATCATTTCCCATTATAAGCTATAGGAATTAGTTGCTTTCTTAATAAAAATGCTCC TTAGCCTTAAGGAATGGAAAAGGAAACTAAGGGATTTTCACAAACAGGTGGCGAGCAACTCATCCCAGAACGTGGAACTG ATGCTACAAGAGAGTTGCACAGACCAATCAGGAAGCCTAGTAGTCTACACCACCATCGACGTTGAATCTATTCAGCTAGC CATGAGCGGCGAGGACCCTTCCTGCATTGCCCTTCTTCCTCAAGGGTTCATGATAGTGCCAATGGTACCATCCAATTCCA CCGATGCCAATTCACCCGAAGCTGGTGCTGGTAACACTTCAGGTTGTCTTCTGACAATGGGGCTGCAAGTTCTGGCAAGC ACAATCCCCACTGCGAAGCTGAACCTTTCAAGCGTGACGGCGATCAACAACCACCTCTGCAACACTCTGCACCAGATTGA AGCTTCTCTTTGCAGTGCTAACGGTTTCCTTGTTGCTGAACCCACTACCAGTGCACCCATCACAAAGCAGTGATGAATTG ATATGCAAGGAAACAAAATTGAATCCTTCCTACTACTACCCTTGTTTGCTTCTCTGTCCTTTTGGATTTGTAGTTTGATG TGTGATGAGGACTTGGATTTTAGGTAACTAGTTAACTAGAGTGACATTGTGACAAGACAGGGAAGAAACATGGTAGGTGC AGTGTGTTAAATAATGTTGGATTTTAGGGTAGTATGTTAGAAGAAGATGAAGTTGCCTGTGAGTGCGTTTGGATACAGGT CAAAGAACACTTACTTATCCAAGCTTATCTGTTAAATAAGCTTTAGATAAGCTCTGAGTAGTGCTCTTTGTTTTGTATCC GAACATGTTTGGGTTTTAGGTAGCATTAGTGTGTTTTGTATGGGAGTGATGGAGAGGGTAGAGGGACTGAGGGAGTCAAG AGCGCACCAGATAATGGCTTTTATGTTCTGGTAAAGGCCTTTTGGTTTTGGTTCGGGTATTGACTCCTGCTTCTATGTCA GACTCTACTGTATGACTATGCATGCTTATCATTCAACTAAACTTCATTTTTTCTAAGTTTGCTCTTCTTTGTCTATAAAT CTTGC
CDS sequence (LotjaGi2g1v0336500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGGGGATTGCCAAGTCATGTCAGATACTCTCTTCTCGTCACCGATCCAGAACCCTAACTTCAACTTCATCTCCAC CATGCCTTTTCACCCTTTTCCTCCCATGAAAGAAGAAGATTCTATGTTGGGAGGGAAAGAAGAGATGGAAAGTGGTTCTG AAAGTGAACAAGTTGAAGACAAGTCCGGGAACGAGCAAGAGATCACTGAACAGCCTAAGAAAAAACGTTATCACAGGCAC ACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCGGATGATAAGCAAAGGATGAAACTAAG CCATGATCTAGGCCTAAAACCACGCCAGGTCAAGTTCTGGTTCCAAAACCGCCGAACCCAGATGAAGGCACAGCAAGATC GATCAGATAATGTGATACTTAGAGCTGAGAATGATAGTCTAAAGAATGAGAACTATCGGTTACAAGCAGCGCTGCGTAGT ATTATATGTCCAAATTGTGGTGGCCCGTGCATGATGGGCGCGGAAATGGGCTTGGATGAACAGCAGCTTCGCCTTGAAAA TGCTCGGTTGAGAGAAGAGTTGGAACGTGTATGTTGTATCACTTCAAGATACACTGGTCGCCACATCCAGACTATGGCAG CTTCTCCTGCTCTCATGGCTCCTTCATTGGATCTGGACATGAACATCTACTCAAGGCACTTTGGGGAAACCCTTCCTCCC TGCACAGAAATGATTCCTGTGCCAATGCTACCTCCTGAAGCTTCACCATTTCACCAAGAAGACGGTCTGTTAATGGAAGA TGAGAAGCCCCTTGCCATGGAGCTTGCAGCGTCTTCAATGGCTGAGCTAGTGAAGATGTGCCGCACAAACGAGCCACTGT GGATCCGAAGCAGTACTGATAGTGAAAGGGAAGTGCTTAATTTTGAAGAGCACGCGAGGATGTTTCCATGTCCTCTGAGC CTAAAGCACCAAAGTGAAATGAGGACTGAAGCTACCCGTGACACTTCTGTGGTTATAATGAATAGTGTCACTCTTGTTGA TGCTTTTCTTGATGCACAAAAATGGATGGAGCTGTTTCCTTCAATTGTTTCTAGCGCAAAAACTGTCCAAATTATATCTT CAAGTGCTTCTGGTCATGCAAATGGGACACTTCAGCTGATGTATGCAGAATTACAAATGCTTTCTCCTTTGGTCTCCACA CGCGAGACTCATTTCCTTCGGTATTGTCAACAAAACGCTGAGGAGGGAACCTGGGCCATTGTTGATTTCCCAATTGATAG CTTTCAACAAAATTTCCACACTTCTTATCCCAGATACTGCAGGAGGTGTTCTGGCTGTGTGATTCAAGATATGCCAAATG GGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAGCCTATTCATCAGATATTCTGCAACTATGTGTAT AGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCCAG AAACATATCAGATCTTGGAGTGATACCTTCCCCAGAAGCAAGAAAGAACTTGATGAAACTAGCTCAGAGAATGATAAAAA CCTTCAGCCATAACATGAGCACCTCTGGTGGTCAATCATGGACTGCCATATCAGATTCCCCTGAAGACACAGTTAGAATC ACAACTAGGAAAGTCACAGAGCCTGGCCAACCCAATGGGGTGATTCTCAGTGCTGTTTCAACCACCTGGCTTCCCTATTC TCACACTAAGGTCTTTGATCTTCTAAGGGATGAACGCCACAGATCACAGATGGATGCTCTTTCGAACGGGAACTCGTTGA ACGAAGTGGCTCACATTGCAAACGGCTCGCATCCTGGAAACTGCATTTCCCTTCTCCGCATAAATGTGGCGAGCAACTCA TCCCAGAACGTGGAACTGATGCTACAAGAGAGTTGCACAGACCAATCAGGAAGCCTAGTAGTCTACACCACCATCGACGT TGAATCTATTCAGCTAGCCATGAGCGGCGAGGACCCTTCCTGCATTGCCCTTCTTCCTCAAGGGTTCATGATAGTGCCAA TGGTACCATCCAATTCCACCGATGCCAATTCACCCGAAGCTGGTGCTGGTAACACTTCAGGTTGTCTTCTGACAATGGGG CTGCAAGTTCTGGCAAGCACAATCCCCACTGCGAAGCTGAACCTTTCAAGCGTGACGGCGATCAACAACCACCTCTGCAA CACTCTGCACCAGATTGAAGCTTCTCTTTGCAGTGCTAACGGTTTCCTTGTTGCTGAACCCACTACCAGTGCACCCATCA CAAAGCAGTGA
Protein sequence (LotjaGi2g1v0336500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGDCQVMSDTLFSSPIQNPNFNFISTMPFHPFPPMKEEDSMLGGKEEMESGSESEQVEDKSGNEQEITEQPKKKRYHRH TARQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENDSLKNENYRLQAALRS IICPNCGGPCMMGAEMGLDEQQLRLENARLREELERVCCITSRYTGRHIQTMAASPALMAPSLDLDMNIYSRHFGETLPP CTEMIPVPMLPPEASPFHQEDGLLMEDEKPLAMELAASSMAELVKMCRTNEPLWIRSSTDSEREVLNFEEHARMFPCPLS LKHQSEMRTEATRDTSVVIMNSVTLVDAFLDAQKWMELFPSIVSSAKTVQIISSSASGHANGTLQLMYAELQMLSPLVST RETHFLRYCQQNAEEGTWAIVDFPIDSFQQNFHTSYPRYCRRCSGCVIQDMPNGYSRVTWVEHAKVEEKPIHQIFCNYVY SGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSHNMSTSGGQSWTAISDSPEDTVRI TTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNS SQNVELMLQESCTDQSGSLVVYTTIDVESIQLAMSGEDPSCIALLPQGFMIVPMVPSNSTDANSPEAGAGNTSGCLLTMG LQVLASTIPTAKLNLSSVTAINNHLCNTLHQIEASLCSANGFLVAEPTTSAPITKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 33 | 80 | 48 | - | – | |
| MobiDBLite | 40 | 74 | 35 | - | – | |
| Gene3D | 47 | 130 | 84 | 1.8E-18 | – | |
| SUPERFAMILY | 68 | 132 | 65 | 4.6E-19 | ||
| PANTHER | 70 | 758 | 689 | 0.0 | – | |
| PANTHER | 70 | 758 | 689 | 0.0 | ||
| ProSiteProfiles | 71 | 131 | 61 | 16.876 | ||
| SMART | 72 | 135 | 64 | 6.2E-19 | ||
| Pfam | 74 | 129 | 56 | 4.0E-18 | ||
| CDD | 74 | 132 | 59 | 1.64526E-18 | ||
| ProSitePatterns | 106 | 129 | 24 | - | ||
| ProSiteProfiles | 265 | 503 | 239 | 42.907 | ||
| SUPERFAMILY | 267 | 502 | 236 | 1.92E-31 | – | |
| CDD | 269 | 499 | 231 | 8.86036E-111 | – | |
| SMART | 274 | 500 | 227 | 2.2E-27 | ||
| Pfam | 275 | 500 | 226 | 5.5E-38 | ||
| Gene3D | 323 | 479 | 157 | 7.3E-6 | ||
| SUPERFAMILY | 518 | 753 | 236 | 2.33E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0336500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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