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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340100 |
| Transcript ID | LotjaGi2g1v0340100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT1G31970.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5; TrEMBL-Plants: tr|A0A0L9THZ8|A0A0L9THZ8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0340100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81700989..81705801) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCGCAAACACGACGCCGTTGCGGCCAGCGAACCAGTCGCCGATGAAGCTCCCAACAGCCCCGAACTCCAATCCGA GAAGAAGAAGAAAAAGAAGAACAAAGACAAGCATCAAAACGGAGAGAAAACCAGTCCCAAAAGGAAGCTCGAGGAACTCG ACAATCAAAACGGCACCGAATCGGAGAAGAAGAAAAAGAAGAAGAAGGAGAAGCACGACAACAAGTCAGAAGAGAACGCA GAAGAAACCAAAGAAGCAAACGGTAACGGTAACGCCGATGAAACGGTTGCGGACGGGGCCGTGGTGGTTACAGGGAAGGA TGCTGCCGACGCGAAGTACGCGGCGGTGAAAACCTTCAAGGATTCGGGGCTGCCGGAGAATGTGATGGAGTGCTGCAAGG GGTTTGAGAAGCCTTCTCCGATTCAATCACGAGCGTGGCCTTTTTTGTTAGACGGTCGCGATCTGATTGGAATTGCAGCC ACTGGCTCAGGTGTGTGAAGTTTGTGTTGTTGTTGTTGTTTTGTTGCTGTTGGTGTGTGAATTGAATTTGATACTGATTT TGTTGGTGTTTTGGTTTATCAGGGAAGACCTTGGCGTTTGGAATACCGGGGATTATGCATGTTCTGGGCAAGCGGAAGAA TAAAGCTTCCAGGGGTCGGAGTCCTCTTTGCCTTGTTCTCTCTCCCACAAGGGAGCTAGCTCAGCAAGTATGTATTTTCT AATGCACTGAAGCTGAATTCGAGCTATCGTTTCGTGTGTACTTTGCATTTGTCAAGTACAAATTGATATTAGTTTAGTAG TGTATGTGACTTTCATTAATGTTATGTTCACCCCAAATGAGCGAGAAAGGGAGAAAAGAGAGAGAAATGTGATATATGAT AGGTGATGTGATGCGAACATTAAAGAGAGTTATAAAGAAAAAAGAGGTGGAATGGTGATGGAAGAGAAATGAGGGGTGTA TATATTAAAGTTGTTGTAACTTACATATCTAAGTTAAATGGGTATTGGATGGTATTGCTGACTCGCCAAATGTTGAAATG TTGCTAAGAGTTTTTTTTTTCACTTTACTTTTGTTATAGATATCAGATGTAATGTGTGATGCTGGTAGAACTTGTGGTGT GGATTCTATATGTTTGTATGGTGGAACATCCAAAGGACCACAAATCTCTGCACTAAAATCTGGTGTTGTAAGTTATCAAG CTTTCCCTTTCCTTCTGGATGATTTGTGTTCTAATGTCAGATACAATTTCATGCTTGTTTACTTCCATATCTGGGGAGCT TTTTGTCTTCCTTTTTTATAGACAATTAAACGAATGTATTAATATTAATTTTTTCATCCAGGACATTGTCATTGGAACTC CTGGCCGAATCCAGGATTTGATTGAAATGGGTATCTTGAGCCTGAAAGAAGTATCTTATGTGGTATGTAACAAAATACTG ACTAAATTCTTTTGTTTAGTTCTCTTTTAGTTTTTAATGCTATACTGGATTTTGGATTTACATACAATTTGGATCTCAGC TGAATTTTGTTTGGCTCTGGATATAAACTTAGTTGCCCACTTTTTCATTTTATTATCATTCTATTTCAATTCTAGCTTAT ATGTGAAGCAGCTGCTTGTTTATAAGTAACATTTACTGAGCCTTCTGCAAATATTATCATTTATCTATTCTAGGTCCTTG ATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGGCAGACATGTTCTGGTATGAGA CATGTTTATCAGCAGTTGCCTTTTTTTTTATCATGAATGTGGCTTTTAATTGCTTTTTTTTATGTTTGGGTTAAATATGA TGTAGTTCAACTCTTCTGTTCCTTAAATTCTGATTTTAATTTGAACTTGCATCGATATATTTTGTTTCACATTTTTTTTG TATCACTAAAGAGAGTATAATTTCTGCAGTTCGTCAAATGATTATGTTCAGTGCTACATGGCCTTTAGCAGTTCATCACT TAGCACAGGAGTTTATGGATCCTAACCCTATAAAAGTTTGTATCTTCATTTTCAAACATGCTTTGAAATATTGTTTCGGT ACAAGTTGTGTAAAGAGATATTTAAACTTGTGACAGGTTGTCGTAGGTTCCGAAGATTTAGCTGCCAATCATGATGTCAT GCAGATAGTCGAGGTGCTGAGTTTTAGCAATCTACAGTTCATACCTATTGAATTTATGCTTTTTGTGAATCTTAATAATT CCTTTTACATTTAATAGGTTTTGGATGACCGCGCACGTGACAAGCGTCTGTTTACTTTACTTGAAAAATACCACAAATCT CAGAGGTATCTTCCTGTGGTTCCCTGTCTTTTGTTCAATTGCCTCTTAAAATTAGAGATATCTTCTTCCCAGTCTGGGAG GGATATAGACTGCCGAGTGCTGAATGTCATAAACTGACTGCTAACATGGGATATGGCTCTTGCTGGCTTGATTCATATCC ATCCCCAACAAAGATAAAATGGGGGGAATGAAAAATAGAAATCTTGTTCAAAATCATCTTGAAGTCTGCATGGTTTGCAG AGGGTGGGGATAGCAGTCATGTGGGCTACAACTCCCAATGTGCTGGCCACTGAAATGGTAGATGAGAAACTAGATGGTGG GTAGAAGTACCATGTCCCGACCCATTATCATAACCCCATTACCCTTGAAAGTGAAACCCTGAAGAGGACCTACCAGTTTG GCTCTTCAGCTGTCCAACTCTGTTGAGCAGCCTCTTATCCTATCAAACTCTACAGCTGTTACACTACTCTGCAGCAACCT CCCATCTCTTGCAACCTTCTTCAGTTACCTTCCTTCTCCACTGAACATTTTCTTTTGTATTTTTTTTCTTTTTTCTACGT TCTCTCCTTGTGCTCTTTGTTTTCACTCATTCTATTCTGTTATTTTGGTTAGTTTATGCCTTTAGTAACACTATTCGGTT TTTTCTTCTCTATTCTGTACAGTTTGAGCAGTGGTTCTGTTATTTCTTTTTCTTCTCTCCAATTTGGGCAGTGTTTCTTC CTGTACAATTCTCCTCTATTTTAATTCTTTTTTTTTTCCTATCCTCCAAATGTTTAATACTATTCTTTTCAATTTTGTTC TATTTCTTTTTTGTTCTCTCCTTTATATATCTTTAGTGAATTTTATTTAGTTTAGTTTGTCCCCGAAAGATAGCTCAAGT GGTGCTGGTGGACATATAGGTGGGGAGAGGGAGGTCCAGGGATCAACCCTAGGAGGGATGTAGTTTATCTTTTCCGATGT ACCAAACAAAATCTGTTTTTTGCTTTCTGCTATAAACTGCCACCCCCATTAACAACACTAGGGGGTATAGGGAGTATGAC TTCCCTATGTTTGATTTTGTAATTGCTATTTAATATATATTGATATTGATACCCTATTCCACCCTAGTTCTGCCACATGT TGCTAACAGCTTGTATCTTTCTCAGAAATCGAGTATTGGTTTTTGCTTTATACAAAAAGGAAACCGCACGAGTTGAAAGT ATGCTTCAACAAGGGTACTTTACTACTACTGTTGCAATTTATACACATTAGTTTTAATAATTTAACAGGTGAAAGTTTCT GGTTAATGCTCTAAGCTGTTGCTGGTATAATTGTATTCAGGGGCTGGAAGGCTGTGTCGATACATGGGGACAAATCACAA CATGAACGCACAAAGGCACTGTCTTTATTCAAGAACGGAAGCTGCCCTTTGATGGTAAGCTGTTTTACACTATGATTGTA ATTATACCAGTTTTGGCTCCATAAAATAAATAATATTTATGAAATGGTATCAGTGTCAAATCTATAAACCTTTGATTGGT CTCTTTACAACACTGCGGATCTATTGATGATTTGTTATTATCTTCTCATCAAGCTTTATGTAAGATGAACTAAAAATCCA CATTATTATTCCCTTGTCTTTAAAAAAAAAAGTTGGGTAGGATATGGCAAAGTGATTGTCAGGACAATCTGTCTTCAAAA TTTAGCATCCTTGTGAGGGCTCTGCTGAATGCCTGTAGTGAGCGTGAAGTATGGAATACTTCTATGGGAACTATGTCTAT TGAGCAGGACATGTCCCTTAAACATTCTCCACCCTTGCTGTCACTTTATTTGGTCCATTATCTGTTTTCTCCTCCCTTTC TGTTGCTTGATTTGTTCCATTGTTTGTTTTTCACATTTTAATGGGGGCAGATTGCGACTGATGTGGCTGCACGGGGATTG GATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCACTAACTACAGAGGATTATGTTCATAGAATTGGGCGCAC TGGGCGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTCACGCAGCAGAATAAGGTGTGTTAATTTTTTCTTATCAAAA TATATTATACATAGTTATTTGCTCCAATGTCCCTTATTTCTATTATTATAATACTAATGAATATTGGAAAAAATTTCAGG GACTTGCTGGGGAGCTCGTGAATGTTTTAAGAGAAGCAAATCAAGTTGTGCCAGACGATCTCTTGAAATTTGGGACACAT GTAAAGAAAAAGGTAATTTTTCTTCTCCACTTTTGTTCTGCACCAGTTTAGATTTCTTTTGTGATTACGAAGTAGGATAA ACTTCTCTTTGCCTCAGTTCTTTAGACATGTCCAAGACATTTAATTGATTGTTAAAACAATTTTCTGCTATATCTAGGAG TCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTATGAAGTCTCAAAAAATAAAGTTTGCCGACTCAGA CGATGAAGACTAA
CDS sequence (LotjaGi2g1v0340100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGCAAACACGACGCCGTTGCGGCCAGCGAACCAGTCGCCGATGAAGCTCCCAACAGCCCCGAACTCCAATCCGA GAAGAAGAAGAAAAAGAAGAACAAAGACAAGCATCAAAACGGAGAGAAAACCAGTCCCAAAAGGAAGCTCGAGGAACTCG ACAATCAAAACGGCACCGAATCGGAGAAGAAGAAAAAGAAGAAGAAGGAGAAGCACGACAACAAGTCAGAAGAGAACGCA GAAGAAACCAAAGAAGCAAACGGTAACGGTAACGCCGATGAAACGGTTGCGGACGGGGCCGTGGTGGTTACAGGGAAGGA TGCTGCCGACGCGAAGTACGCGGCGGTGAAAACCTTCAAGGATTCGGGGCTGCCGGAGAATGTGATGGAGTGCTGCAAGG GGTTTGAGAAGCCTTCTCCGATTCAATCACGAGCGTGGCCTTTTTTGTTAGACGGTCGCGATCTGATTGGAATTGCAGCC ACTGGCTCAGGGAAGACCTTGGCGTTTGGAATACCGGGGATTATGCATGTTCTGGGCAAGCGGAAGAATAAAGCTTCCAG GGGTCGGAGTCCTCTTTGCCTTGTTCTCTCTCCCACAAGGGAGCTAGCTCAGCAAATATCAGATGTAATGTGTGATGCTG GTAGAACTTGTGGTGTGGATTCTATATGTTTGTATGGTGGAACATCCAAAGGACCACAAATCTCTGCACTAAAATCTGGT GTTGACATTGTCATTGGAACTCCTGGCCGAATCCAGGATTTGATTGAAATGGGTATCTTGAGCCTGAAAGAAGTATCTTA TGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGGCAGACATGTT CTGTTCGTCAAATGATTATGTTCAGTGCTACATGGCCTTTAGCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAAC CCTATAAAAGTTGTCGTAGGTTCCGAAGATTTAGCTGCCAATCATGATGTCATGCAGATAGTCGAGGTTTTGGATGACCG CGCACGTGACAAGCGTCTGTTTACTTTACTTGAAAAATACCACAAATCTCAGAGAAATCGAGTATTGGTTTTTGCTTTAT ACAAAAAGGAAACCGCACGAGTTGAAAGTATGCTTCAACAAGGGGGCTGGAAGGCTGTGTCGATACATGGGGACAAATCA CAACATGAACGCACAAAGGCACTGTCTTTATTCAAGAACGGAAGCTGCCCTTTGATGATTGCGACTGATGTGGCTGCACG GGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCACTAACTACAGAGGATTATGTTCATAGAATTG GGCGCACTGGGCGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTCACGCAGCAGAATAAGGGACTTGCTGGGGAGCTC GTGAATGTTTTAAGAGAAGCAAATCAAGTTGTGCCAGACGATCTCTTGAAATTTGGGACACATGTAAAGAAAAAGGAGTC CAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTATGAAGTCTCAAAAAATAAAGTTTGCCGACTCAGACG ATGAAGACTAA
Protein sequence (LotjaGi2g1v0340100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRKHDAVAASEPVADEAPNSPELQSEKKKKKKNKDKHQNGEKTSPKRKLEELDNQNGTESEKKKKKKKEKHDNKSEENA EETKEANGNGNADETVADGAVVVTGKDAADAKYAAVKTFKDSGLPENVMECCKGFEKPSPIQSRAWPFLLDGRDLIGIAA TGSGKTLAFGIPGIMHVLGKRKNKASRGRSPLCLVLSPTRELAQQISDVMCDAGRTCGVDSICLYGGTSKGPQISALKSG VDIVIGTPGRIQDLIEMGILSLKEVSYVVLDEADRMLDMGFEQIVRSILGQTCSVRQMIMFSATWPLAVHHLAQEFMDPN PIKVVVGSEDLAANHDVMQIVEVLDDRARDKRLFTLLEKYHKSQRNRVLVFALYKKETARVESMLQQGGWKAVSIHGDKS QHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGEL VNVLREANQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKFADSDDED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 95 | 95 | - | – | |
| MobiDBLite | 38 | 88 | 51 | - | – | |
| Coils | 50 | 85 | 36 | - | – | |
| Gene3D | 58 | 326 | 269 | 1.8E-75 | – | |
| PANTHER | 112 | 501 | 390 | 1.0E-128 | – | |
| PANTHER | 112 | 501 | 390 | 1.0E-128 | – | |
| ProSiteProfiles | 117 | 143 | 27 | 9.346 | ||
| CDD | 133 | 324 | 192 | 8.98605E-97 | – | |
| SMART | 134 | 340 | 207 | 7.3E-63 | ||
| Pfam | 140 | 308 | 169 | 9.5E-46 | ||
| ProSiteProfiles | 146 | 323 | 178 | 29.755 | ||
| SUPERFAMILY | 190 | 473 | 284 | 1.48E-71 | ||
| ProSitePatterns | 269 | 277 | 9 | - | ||
| Gene3D | 327 | 502 | 176 | 2.0E-53 | – | |
| ProSiteProfiles | 336 | 499 | 164 | 22.166 | ||
| CDD | 337 | 469 | 133 | 1.02558E-56 | – | |
| Pfam | 354 | 460 | 107 | 5.3E-29 | ||
| SMART | 379 | 460 | 82 | 7.1E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0340100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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