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LotjaGi2g1v0343600.2

Overview

Field Value
Gene ID LotjaGi2g1v0343600
Transcript ID LotjaGi2g1v0343600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Tetratricopeptide repeat protein; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|I1L565|I1L565_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82086151..82093656) extracted from Lotus japonicus Gifu genome v1.2.

TGCTAATGCGCTTCTAATCTCACCACATTACCAAACCACTCTTCCTTCCGAATCCCATGCCCCAGTCTTCGCTAATCAAT GTTCTGAAAAAGCCACAACCCTTTTTATCTTTCTTTGTCAAAATATATTTATTTAATTGTTAGAATTTTTCTTGACATTC CACATTGCAGATTCTCATCATACTAGATTTTACATTCGTGCTGGAACAGCGGTTGACCTGACACAACAACCACCCTCCAC TCTTCTGTTCCTTTCTATTTGTTTTGTTTGTTTGTTTCTTTCTTCAGACAAGACAAAACAAACAAAGATGAAGGGTGTCT GCAAATGCATAGTTGGTCAAATAAAGATGAAGGGTGTCTTAGATCTTGTTTGAGGTCACTGTTGCATCTCTCATAATTGT CTTGGTGCCACGTTTCCTTGGTGAGTCCTATGATTATGTTCTGTTTTTGCTTTTTTTTGTTTTCTCTCTGTTATTCCATT TCCCATGTGGTTTCCTGGATCTGCAATTTTTTTCATTCCCATTGCTTTTTTGTTTACAATTTTGAATTTTGCTTCCAAAG TTTGATTCTTTTTGTAATATTATGGAACCCCATTACTAGAATAATGAGCTTTGGAGGTCAAGAAACATGCATTTGTTGGG GGGTTGAATACTTGAATTGAATTCTAGAAGGCATTGTTTGGATCCGTTTCCAGCGGTGCCGTGGGGAATGGGGGATGATG TTTGTTTTTCTTTGTGATTATGAATATTTAATAGGTTTGTATGTATGGGTTTTTATTTAGCTTCTTTTGAAATGTAATGA TGAATGTGCAGTGTCACTGAAGCATCAAGAGGATAAAGAAATTGAAACTTGATTGAAAAGTGTGGATGTGGGGTGTATGC TGGTAGTGGGGAGATGATTCATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGC ATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATC ACTCAATTTCGAGGTCAGTTTGTTAATCACGCATCATTTAGTTTGCTGGCTTGTGTGTGCCATTTTTTTGTTTCCCTTTC ATGACATGAATAGGCAGCTGTTTATGGATTGTTTATCTAATATTTGCAAATAGTTATTAGAAAAAAAAGGAGCAAAATGC TACTAATCATGGAGGAACCTGGCTCAAGCTACCCTTTGTTGCTAAATGATTGCTACCATTGTTGCTTAGTGCTGATTTTT TTTCCGGGCACCATTTTTGAATTTGGCATGGAATTATTACTCATCATTCTTGCAAATTATTTAAGCTTCATTACGTTGTC TTACTATGTCTTCCCTGTTTTGGAGCAATCTAATTCTATTGAGACAAGTGGGTGCAGGGTCATCAAATATGTTAATAATG AATTGGTGGATATTTGGAGGATATAAGTTTTTTTCCTGGTTTTCTAAGATATGATTAGACCTTTGATTTTAAAGCAAATT TGAAGGTCTTTAGTGTCCATCATTGTTTCTTATAACAATTTAATTTGAGGTGTAGAAGAATCTGGTCCCAAAAACCTTCT ACTGAACATATATTAATACCTTCCACTCATAAAGTCTGTCTTTGAATTGTCAAATTTGTCTTCCTTGTGGCTTGTGCTAT GTTTGGACTCTGAGATTAATTATTATGTTTTGGACAACCATAAATTTTTGTAGTGGTTATGAGGAATCTGTTGTTTTGAT GGTACTAGGTTGGCATAGGGTAAGTAATGATGACAGAAGTAATAAAGGTTTTAACAAAGAATTTTGTTAATGCATGGATT ATCTATATAGTAGTAACTATTTTGTCATTTTTAACACCTTGGACAATTAAGGGAGTAAATTTCTTCTAACATGAGCCAAA CCTTAGAATACTTCCTTCCCAGAATAAAATTTTCATATCTCTGAGAACGTAATTTTTTCTTTGGTAATGTGCGTAATTTT TTCTTTGGTAATGTGATCAGTACTCAGATTATACTTATGTAAACATTGAACATATTATGGATTATATGATTTATATATAT GGGCATTATGTAATTGGAATTAAAACTAGATAAATATGCTGAGGCAGTAAATGAACCAATATGCGGTACAAAATGTAAAT TTGATGCAATCTACGCCTTGTACATTTGGTATATGAAGGTGTTGCATGTTTTCTCTTTGCTCTGATTTGAAGCCACACTT TGGGGTTAAGTTACTCAGTTGTTTGAGGTTTGCTCCTTGATTATTACTTCAACACAGGAAGCAAGAGCTCTTCTTGGGAA GTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGAT TGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTCTTCAGTCTCTCAGCAT GCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATTTTCTGGTATTGAATA TAGTCTTGACTGTTGAAAGTTGTTCTATACCGGTTGTTTAATTTTTCAATATTGCTTTTCCTTCTGAACAGGAAGGATCT GTCCTACACGTTTTATATTATTCATGAATCAGACATAAAACATTGAGATGCTTATTTATTGGATTCTGCAGAAGCAGCTA ATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAAGTAGATAATAAACTG CAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGATGAGGCAATCTCGGC TTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAATCGTTTGTTGTTTTTC TGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTGCCTAAAAATAATCTC GAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGACCCTTCAGTCATGGA ACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTCAAGAATTGATGCCCGGGGTAT ACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGTGCTTTGAATCTGCTT AGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGCATCC CCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACGAGCATTTAAAAGGCG TCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAGAGGTCTTGCCTTCAG TCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTTTGAGTTGGCTGTTCA ATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTGGTGGCTCTATATTGA AAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTGACAGATGCTGCTTTA GATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCAATCACGAACGATGGA TGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTTTCCGAACTTGTTCAA AGGTAAGATTCTGCCATCTACTTATTTTGCTAGACATATAAGTTTTATATGAGCTTAGAAGATTATGGAAGCTTAAAAAA GCGAGCTTAGAGAAGAAACCAAAAACCACCCTGATGTTAATTACCAAACAGAAATACAGAAACAAGCATTTCTTAATGCT GCAGAAGGTAACCTATGAAAAAGTTGAGTTTGTTTTCTGGACATGGCAGTTATATAGGAAGCTGTTGAAATTATAGGGCT TTAAGTCGAGAAGAAACTGAGATAAACTAGATTGTGAGTAATATTCTCTTGTGTAGTTTTATGTGATATGTTATCAGATG TTTTGGATGTTAATCCCTATTTATACCTGTACCAACCTCCTATTCCTAATTAAAGAAGGAAACAAATCATGAAATACTGG AAGAAAAAAATATCAAAAACAATACTAAAAGATAATCTAAGATACTCTGCGTTGCTTCAAGATAATGAAATACTAGGAGT TATTTTTCATATATTCTTGGGTTAAATAAACTTTTTAGTCCCATGTCTAGATTTGGTTTTAGTCCATGTTATCTATTTTT TATGATTTTAGTCCATACATTTACAATTAATTTTGGTTTCGATCTCCACCGTTAATATCTCATTGTTAATTGGTGATCCA CGTCACCATTGACTCATGTCCAGAGTAATTCTATGTGGTCTATTTTGCTCCCAAGTTAGATATGATAGTTAGCTCTTTTA ACACAAAAATTCACATTCAGATGAAGCCTCCTGAAATTGAATTGTCTTGTTTTTTTATTAAAATAAATAGCCATTAGACC TGACTTGACAACAAATAGGCCACTATCAATTACTCTGTACATCGTCGGTGTTGACGGAAGCGGTGTTCCAGAGGTTGTGG GTGGTAATTTGTGGCTGGCTGGCTCTAAGAGCAAGGTTTTTGGAGCGAATTTGTTTCCTCTTGCAGAGATGGTTGGTTCA GTTTTTTGGGTTGAAGGGTGTCTTGGATCGTGCGTTTTTAGGTGCTTCGATCGGCCTACTCTCCGTGACACTATGTTATG GAGGGAGCTCTGGCCGTGTTTGGTTGATTAATTCCAAGAGTTTTTTTAGCGTTGCAGCTTTGGATTTGGACGTGGAGTGG GTCTTTGGTGTTGTGGGTGATGATTGTTGGCTTGTTTGTTGGGTCTTTTGTTTACTTGACTAGATGTGTCTCGGTGTTGT AGGTGTCGAACGACTTATGTCGCTTTTTTCAACTTTATTGGGGCCTTTTCTAGTAGAGTAGACTCTAGGGTTTTTGGTCT TTAAAAGCTTCCTTGTGTTGCTTACCAGCTTTTGTTGGTTAGGTTATTATTCCCATGTTGAGAGGGGTTGTTTCTCAACA AGTTATATTTATATATATATCTATTATTCTCCTTTCAAAAAAAAATCAATTACTCTGTAGATGTGGCAATGGTGAGATGG TGGCCCTCTGTTAGCCACATCTCCAATTAACGATGAGATTTTAATAAAGAAGATTGAAACCAAAATTATCTATAAAAGTA GAGACCAAAACTATAAAAATTAGATTATTCTCCTTTCAAAAAAAAAAATCAATTACTCTGTACATGTGGCAATGGTGAGA TGGTGGCCCTCTGTTAGCCACATCTCCAATTAACGATGAGATTTTAATAAAGAAGATTGAAACCAAAATTATCTATAAAA GTAGAGACCAAAACTATAAAAATTAGATGGTAGGGAACACAGCCAAATCTGACAATAAAATGTTGAACTAAAAACTTATT TAAGCTTATATTCTAATAGAAGGTTTATCTATAAAACATAACTATGAGTTCTCCAACTTATTTAAGCTTAGATTGGGAGA AAAAAAATGAGCATAAATTTGTTCTTTTAATATATTTCCTTTTATGTTGCTCCTTTGCTCACTGGAGTTTAAGTGCTTCC TTCATCGATTCTAAAATCAATATTGGTTATCACTCTTTCTAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCA TGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGG AGAACTCCGCAGCAATAATGCACACAGAAGGCAAGACCAAAATCTTTGTGCTGTTTGAGGTTTTCTATTTTTGCATGTTG AACTTATCTCCAGCCTTCTTTTAATCTAATTGAGACTGATTCAGAACCAGGGATTCAATCCCTTGCTTGCACATTCCTTT CTATTGGGAGTGTTTGTGACTGGTCATAGGCCTAATGCTGGATCCATTTGTAGTGGTATTTAAAAATTTAAGACGGTGAA ATCACATCCACAGATGGAGCAAATCTTTGGTACTCTATTGTACTGAGGAGTCAATGCTCCCTCTCTTACAAACACAGTTA TCTTTCATTTTTATTTTTGTAAAAATATTAAAAAGGGAATAAATGACCATAAAAGGATAGGTGACAACATTATAGATGAT AGTACCTACTAGTACTACTACTGAATTTTCCCCCCAAAGAAGATATGGAGATAGAGCACGTCAACTTGTATGATATTAAA TTCTGAGAGAACCTTCTCTAGGATTGACGTTTTATGTTTTTATTATATGCTTCTATCAGGTGTCTTGTTCGAAGGACGCG GGCAAAATCAAGAAGCTCTCAGTGCTGCGATTAATGCTATCCTACTTGAGCCAAACTATGTTCCAAGCAAGATCTTGATG GGTTCTTTGGTTCAGAAATTGGGTTCAGAGGCTTTGCCTGCTGCAAGAAGCTTGCTGTCTGATGCACTTAGGATAGAGCC CACGAACCGCATGGCTTGGTATCACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGGTGATGCTGCTGATTGCTTCC AAGCTGCTTACATGCTTGAAGAATCTGATCCAATTGAAAGTTTCAGCAGCATACATTAACTAGCTTCGACTTCAGAACAG TTAACTCTGCAGCCATCAGTGATTTATACCATTGAGTTTTCAGCTAATACATCTTCTGTGTTCAATGGGACACATTAGGA ACATTTTTAGCAGATACATTCCCTTTTTGAAGCAGAAAATTGAAATATTGTCATCACAGACTAGGCTCAAAGTAAAGGAA CTGAAACCATTATTTGAGAATAAAATGAAACGTGATCGATGTTAGTCTGGTTGTAGGATGGATGAATTGTAAAGAACTTA GACTGGCAGAGATTTTAATGTATGTCGCTTAGTAGAGCAGTATCTATGTAGAGAGAATAGAGATTCACTTTTTTTCTTTA ATGTGCTTTAGTTTTTAGGCTAGATCTACAAAAGGAAAAATGTGTTTGGAGAGTCACTTGAATACAAATGCAACCCCTTG TGCTGTTATGTACATTTCTGTAGTAACTTTAACTTGGATGTGGTTACATGTGTAGGTGTAAGTAAGCCCAAATATATGTT TCCACTTTCTTTTGGTAGAAAGAAATATGCTATGCACAATTATATTTCTACTTTCATTTGGGCACATATACCCATTCTTA CAATGTGTAGATAGTGCATGTTTCGAATAATCACGTATGTCATAGATTGCATTTGGGACATAAGTA 

CDS sequence (LotjaGi2g1v0343600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGA GGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGAAGCAA GAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAA GCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTC TTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAAT TTTCTGAAGCAGCTAATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAA GTAGATAATAAACTGCAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGA TGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAAT CGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTG CCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGA CCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTCAAGAAT TGATGCCCGGGGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGT GCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGAT CTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACG AGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAG AGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTT TGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTG GTGGCTCTATATTGAAAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTG ACAGATGCTGCTTTAGATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCA ATCACGAACGATGGATGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTT TCCGAACTTGTTCAAAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATGCTAGC CTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATGCACAC AGAAGGTGTCTTGTTCGAAGGACGCGGGCAAAATCAAGAAGCTCTCAGTGCTGCGATTAATGCTATCCTACTTGAGCCAA ACTATGTTCCAAGCAAGATCTTGATGGGTTCTTTGGTTCAGAAATTGGGTTCAGAGGCTTTGCCTGCTGCAAGAAGCTTG CTGTCTGATGCACTTAGGATAGAGCCCACGAACCGCATGGCTTGGTATCACTTGGGATTGGTTCACAAGAATGATGGCCG AATGGGTGATGCTGCTGATTGCTTCCAAGCTGCTTACATGCTTGAAGAATCTGATCCAATTGAAAGTTTCAGCAGCATAC ATTAA 

Protein sequence (LotjaGi2g1v0343600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESSEYESVSIREVHANGSSMAASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQ AAIQRLQPSFSEKSPVKKGRTRTESPSSVSQHAASLVLEAIYLKAKSLQKLGKFSEAANDCKRILDAVEKIFYQGIPDIQ VDNKLQEIVSHAVELLPELLKLAGCYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQVEGSYV PKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCNQTSILAKNFQELMPGVYHRIDRWNSLALCHSGAGQNDS ALNLLRKSLHKHERPNDLTSLLLAARICSEHPHLAAEGVDHAQRAISNAQGLNEHLKGVGLRMLGLCLGKQAMVASSDFE RSCLQSKALESLEEAIRLERNNSDLIFELAVQYAKHRNLTAALRSARHFFNETGGSILKAWILLVLILSAQQKFMEAEVV TDAALDQTARWEQGPLLMLKAKLKISQSRTMDAIETYRYLLALVQAQKKSFGPFRTCSKVDDDKVNEFEVWHGLANLYAS LSHWKDAEICLQKAKDLKENSAAIMHTEGVLFEGRGQNQEALSAAINAILLEPNYVPSKILMGSLVQKLGSEALPAARSL LSDALRIEPTNRMAWYHLGLVHKNDGRMGDAADCFQAAYMLEESDPIESFSSIH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 693 693 0.0
PANTHER 1 693 693 0.0
Gene3D 20 207 188 2.4E-9
SUPERFAMILY 49 198 150 5.69E-6
SMART 118 151 34 3.1
SUPERFAMILY 118 443 326 1.21E-9
Gene3D 277 453 177 3.2E-9
SMART 302 335 34 15.0
ProSiteProfiles 302 335 34 5.399
SUPERFAMILY 407 524 118 1.77E-6
Gene3D 459 690 232 7.3E-23
SUPERFAMILY 539 680 142 1.41E-18
SMART 548 581 34 0.079
ProSiteProfiles 548 581 34 7.169
ProSiteProfiles 548 685 138 21.556
ProSiteProfiles 582 615 34 6.874
SMART 582 615 34 45.0
Pfam 635 679 45 0.0015
SMART 652 685 34 1.1
ProSiteProfiles 652 685 34 8.585

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0343600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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