Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0343600 |
| Transcript ID | LotjaGi2g1v0343600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|I1L565|I1L565_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82087051..82093009) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGA GGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGTCAGTT TGTTAATCACGCATCATTTAGTTTGCTGGCTTGTGTGTGCCATTTTTTTGTTTCCCTTTCATGACATGAATAGGCAGCTG TTTATGGATTGTTTATCTAATATTTGCAAATAGTTATTAGAAAAAAAAGGAGCAAAATGCTACTAATCATGGAGGAACCT GGCTCAAGCTACCCTTTGTTGCTAAATGATTGCTACCATTGTTGCTTAGTGCTGATTTTTTTTCCGGGCACCATTTTTGA ATTTGGCATGGAATTATTACTCATCATTCTTGCAAATTATTTAAGCTTCATTACGTTGTCTTACTATGTCTTCCCTGTTT TGGAGCAATCTAATTCTATTGAGACAAGTGGGTGCAGGGTCATCAAATATGTTAATAATGAATTGGTGGATATTTGGAGG ATATAAGTTTTTTTCCTGGTTTTCTAAGATATGATTAGACCTTTGATTTTAAAGCAAATTTGAAGGTCTTTAGTGTCCAT CATTGTTTCTTATAACAATTTAATTTGAGGTGTAGAAGAATCTGGTCCCAAAAACCTTCTACTGAACATATATTAATACC TTCCACTCATAAAGTCTGTCTTTGAATTGTCAAATTTGTCTTCCTTGTGGCTTGTGCTATGTTTGGACTCTGAGATTAAT TATTATGTTTTGGACAACCATAAATTTTTGTAGTGGTTATGAGGAATCTGTTGTTTTGATGGTACTAGGTTGGCATAGGG TAAGTAATGATGACAGAAGTAATAAAGGTTTTAACAAAGAATTTTGTTAATGCATGGATTATCTATATAGTAGTAACTAT TTTGTCATTTTTAACACCTTGGACAATTAAGGGAGTAAATTTCTTCTAACATGAGCCAAACCTTAGAATACTTCCTTCCC AGAATAAAATTTTCATATCTCTGAGAACGTAATTTTTTCTTTGGTAATGTGCGTAATTTTTTCTTTGGTAATGTGATCAG TACTCAGATTATACTTATGTAAACATTGAACATATTATGGATTATATGATTTATATATATGGGCATTATGTAATTGGAAT TAAAACTAGATAAATATGCTGAGGCAGTAAATGAACCAATATGCGGTACAAAATGTAAATTTGATGCAATCTACGCCTTG TACATTTGGTATATGAAGGTGTTGCATGTTTTCTCTTTGCTCTGATTTGAAGCCACACTTTGGGGTTAAGTTACTCAGTT GTTTGAGGTTTGCTCCTTGATTATTACTTCAACACAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTA ATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAA AAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGA AGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATTTTCTGGTATTGAATATAGTCTTGACTGTTGAAAGT TGTTCTATACCGGTTGTTTAATTTTTCAATATTGCTTTTCCTTCTGAACAGGAAGGATCTGTCCTACACGTTTTATATTA TTCATGAATCAGACATAAAACATTGAGATGCTTATTTATTGGATTCTGCAGAAGCAGCTAATGATTGTAAACGCATTCTT GACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAAGTAGATAATAAACTGCAAGAGATAGTGAGCCACGC AGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTA GCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAATCGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAG GCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTGCCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTT AATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTT CTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTCAAGAATTGATGCCCGGGGTATACCATCGTATCGATCGTTGG AATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCA TGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAG TGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACGAGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGT CTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAGAGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATT GGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTTTGAGTTGGCTGTTCAATATGCAAAGCACCGAAATT TGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGTT CTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCTAGATGGGA GCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCAATCACGAACGATGGATGCTATTGAAACTTACCGCT ACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTTTCCGAACTTGTTCAAAGGTAAGATTCTGCCATCTA CTTATTTTGCTAGACATATAAGTTTTATATGAGCTTAGAAGATTATGGAAGCTTAAAAAAGCGAGCTTAGAGAAGAAACC AAAAACCACCCTGATGTTAATTACCAAACAGAAATACAGAAACAAGCATTTCTTAATGCTGCAGAAGGTAACCTATGAAA AAGTTGAGTTTGTTTTCTGGACATGGCAGTTATATAGGAAGCTGTTGAAATTATAGGGCTTTAAGTCGAGAAGAAACTGA GATAAACTAGATTGTGAGTAATATTCTCTTGTGTAGTTTTATGTGATATGTTATCAGATGTTTTGGATGTTAATCCCTAT TTATACCTGTACCAACCTCCTATTCCTAATTAAAGAAGGAAACAAATCATGAAATACTGGAAGAAAAAAATATCAAAAAC AATACTAAAAGATAATCTAAGATACTCTGCGTTGCTTCAAGATAATGAAATACTAGGAGTTATTTTTCATATATTCTTGG GTTAAATAAACTTTTTAGTCCCATGTCTAGATTTGGTTTTAGTCCATGTTATCTATTTTTTATGATTTTAGTCCATACAT TTACAATTAATTTTGGTTTCGATCTCCACCGTTAATATCTCATTGTTAATTGGTGATCCACGTCACCATTGACTCATGTC CAGAGTAATTCTATGTGGTCTATTTTGCTCCCAAGTTAGATATGATAGTTAGCTCTTTTAACACAAAAATTCACATTCAG ATGAAGCCTCCTGAAATTGAATTGTCTTGTTTTTTTATTAAAATAAATAGCCATTAGACCTGACTTGACAACAAATAGGC CACTATCAATTACTCTGTACATCGTCGGTGTTGACGGAAGCGGTGTTCCAGAGGTTGTGGGTGGTAATTTGTGGCTGGCT GGCTCTAAGAGCAAGGTTTTTGGAGCGAATTTGTTTCCTCTTGCAGAGATGGTTGGTTCAGTTTTTTGGGTTGAAGGGTG TCTTGGATCGTGCGTTTTTAGGTGCTTCGATCGGCCTACTCTCCGTGACACTATGTTATGGAGGGAGCTCTGGCCGTGTT TGGTTGATTAATTCCAAGAGTTTTTTTAGCGTTGCAGCTTTGGATTTGGACGTGGAGTGGGTCTTTGGTGTTGTGGGTGA TGATTGTTGGCTTGTTTGTTGGGTCTTTTGTTTACTTGACTAGATGTGTCTCGGTGTTGTAGGTGTCGAACGACTTATGT CGCTTTTTTCAACTTTATTGGGGCCTTTTCTAGTAGAGTAGACTCTAGGGTTTTTGGTCTTTAAAAGCTTCCTTGTGTTG CTTACCAGCTTTTGTTGGTTAGGTTATTATTCCCATGTTGAGAGGGGTTGTTTCTCAACAAGTTATATTTATATATATAT CTATTATTCTCCTTTCAAAAAAAAATCAATTACTCTGTAGATGTGGCAATGGTGAGATGGTGGCCCTCTGTTAGCCACAT CTCCAATTAACGATGAGATTTTAATAAAGAAGATTGAAACCAAAATTATCTATAAAAGTAGAGACCAAAACTATAAAAAT TAGATTATTCTCCTTTCAAAAAAAAAAATCAATTACTCTGTACATGTGGCAATGGTGAGATGGTGGCCCTCTGTTAGCCA CATCTCCAATTAACGATGAGATTTTAATAAAGAAGATTGAAACCAAAATTATCTATAAAAGTAGAGACCAAAACTATAAA AATTAGATGGTAGGGAACACAGCCAAATCTGACAATAAAATGTTGAACTAAAAACTTATTTAAGCTTATATTCTAATAGA AGGTTTATCTATAAAACATAACTATGAGTTCTCCAACTTATTTAAGCTTAGATTGGGAGAAAAAAAATGAGCATAAATTT GTTCTTTTAATATATTTCCTTTTATGTTGCTCCTTTGCTCACTGGAGTTTAAGTGCTTCCTTCATCGATTCTAAAATCAA TATTGGTTATCACTCTTTCTAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATG CTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATG CACACAGAAGGCAAGACCAAAATCTTTGTGCTGTTTGAGGTTTTCTATTTTTGCATGTTGAACTTATCTCCAGCCTTCTT TTAATCTAATTGAGACTGATTCAGAACCAGGGATTCAATCCCTTGCTTGCACATTCCTTTCTATTGGGAGTGTTTGTGAC TGGTCATAGGCCTAATGCTGGATCCATTTGTAGTGGTATTTAAAAATTTAAGACGGTGAAATCACATCCACAGATGGAGC AAATCTTTGGTACTCTATTGTACTGAGGAGTCAATGCTCCCTCTCTTACAAACACAGTTATCTTTCATTTTTATTTTTGT AAAAATATTAAAAAGGGAATAAATGACCATAAAAGGATAGGTGACAACATTATAGATGATAGTACCTACTAGTACTACTA CTGAATTTTCCCCCCAAAGAAGATATGGAGATAGAGCACGTCAACTTGTATGATATTAAATTCTGAGAGAACCTTCTCTA GGATTGACGTTTTATGTTTTTATTATATGCTTCTATCAGGTGTCTTGTTCGAAGGACGCGGGCAAAATCAAGAAGCTCTC AGTGCTGCGATTAATGCTATCCTACTTGAGCCAAACTATGTTCCAAGCAAGATCTTGATGGGTTCTTTGGTTCAGAAATT GGGTTCAGAGGCTTTGCCTGCTGCAAGAAGCTTGCTGTCTGATGCACTTAGGATAGAGCCCACGAACCGCATGGCTTGGT ATCACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGGTGATGCTGCTGATTGCTTCCAAGCTGCTTACATGCTTGAA GAATCTGATCCAATTGAAAGTTTCAGCAGCATACATTAA
CDS sequence (LotjaGi2g1v0343600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGA GGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGAAGCAA GAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAA GCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTC TTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAAT TTTCTGAAGCAGCTAATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAA GTAGATAATAAACTGCAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGA TGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAAT CGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTG CCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGA CCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTCAAGAAT TGATGCCCGGGGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGT GCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGAT CTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACG AGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAG AGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTT TGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTG GTGGCTCTATATTGAAAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTG ACAGATGCTGCTTTAGATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCA ATCACGAACGATGGATGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTT TCCGAACTTGTTCAAAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATGCTAGC CTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATGCACAC AGAAGGTGTCTTGTTCGAAGGACGCGGGCAAAATCAAGAAGCTCTCAGTGCTGCGATTAATGCTATCCTACTTGAGCCAA ACTATGTTCCAAGCAAGATCTTGATGGGTTCTTTGGTTCAGAAATTGGGTTCAGAGGCTTTGCCTGCTGCAAGAAGCTTG CTGTCTGATGCACTTAGGATAGAGCCCACGAACCGCATGGCTTGGTATCACTTGGGATTGGTTCACAAGAATGATGGCCG AATGGGTGATGCTGCTGATTGCTTCCAAGCTGCTTACATGCTTGAAGAATCTGATCCAATTGAAAGTTTCAGCAGCATAC ATTAA
Protein sequence (LotjaGi2g1v0343600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSEYESVSIREVHANGSSMAASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQ AAIQRLQPSFSEKSPVKKGRTRTESPSSVSQHAASLVLEAIYLKAKSLQKLGKFSEAANDCKRILDAVEKIFYQGIPDIQ VDNKLQEIVSHAVELLPELLKLAGCYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQVEGSYV PKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCNQTSILAKNFQELMPGVYHRIDRWNSLALCHSGAGQNDS ALNLLRKSLHKHERPNDLTSLLLAARICSEHPHLAAEGVDHAQRAISNAQGLNEHLKGVGLRMLGLCLGKQAMVASSDFE RSCLQSKALESLEEAIRLERNNSDLIFELAVQYAKHRNLTAALRSARHFFNETGGSILKAWILLVLILSAQQKFMEAEVV TDAALDQTARWEQGPLLMLKAKLKISQSRTMDAIETYRYLLALVQAQKKSFGPFRTCSKVDDDKVNEFEVWHGLANLYAS LSHWKDAEICLQKAKDLKENSAAIMHTEGVLFEGRGQNQEALSAAINAILLEPNYVPSKILMGSLVQKLGSEALPAARSL LSDALRIEPTNRMAWYHLGLVHKNDGRMGDAADCFQAAYMLEESDPIESFSSIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 693 | 693 | 0.0 | – | |
| PANTHER | 1 | 693 | 693 | 0.0 | ||
| Gene3D | 20 | 207 | 188 | 2.4E-9 | ||
| SUPERFAMILY | 49 | 198 | 150 | 5.69E-6 | ||
| SMART | 118 | 151 | 34 | 3.1 | ||
| SUPERFAMILY | 118 | 443 | 326 | 1.21E-9 | ||
| Gene3D | 277 | 453 | 177 | 3.2E-9 | ||
| SMART | 302 | 335 | 34 | 15.0 | ||
| ProSiteProfiles | 302 | 335 | 34 | 5.399 | ||
| SUPERFAMILY | 407 | 524 | 118 | 1.77E-6 | ||
| Gene3D | 459 | 690 | 232 | 7.3E-23 | ||
| SUPERFAMILY | 539 | 680 | 142 | 1.41E-18 | ||
| SMART | 548 | 581 | 34 | 0.079 | ||
| ProSiteProfiles | 548 | 581 | 34 | 7.169 | ||
| ProSiteProfiles | 548 | 685 | 138 | 21.556 | ||
| ProSiteProfiles | 582 | 615 | 34 | 6.874 | ||
| SMART | 582 | 615 | 34 | 45.0 | ||
| Pfam | 635 | 679 | 45 | 0.0015 | – | |
| SMART | 652 | 685 | 34 | 1.1 | ||
| ProSiteProfiles | 652 | 685 | 34 | 8.585 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0343600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…