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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0346000 |
| Transcript ID | LotjaGi2g1v0346000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G71490.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490; TrEMBL-Plants: tr|K7LGU0|K7LGU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0346000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82274561..82278677) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGGGATGGTACAAATAGTCTTGGCCATATTTTAAATAGTAACCTAACTTATTAACAAAAAGAAAAACACCATGTTGG GCCGAAGCCCAGCCACTCATCTCCCTCCCCACTCAGTTCTCGCGGTGAGGAAGGAGCTGCGCGCGGTGTTTGCACACGAC GGCGGTGGCTGCGACGGAGCCCTCTTCTTGTCCAACCTCCAGAACCCCATTCCAAAATCAACCCGTTCATCTTCACGTTT CTTCCCGGAGTCTGCAACCCAGAGACCTCTTCTTGTCTAAGCTCCATTCCAAAACAATGGAAACAACAACCCACCAAACC TTTTCACAAACCACTTGTATCCAATAACGATTCATCTATGGTTGGTGTTCACATTGCATCCCTCAAGAATTTTGTATACC ATGGCCACTTGTCAAACGCATTCAAATCTTTCCTTCACATACAGCACCATGCTGCAGCTTCTTCTCCTGGGTTTTCCCAT CTTCTCTTGCACCCCATTTGCACTCTTCTCTTGGGTTGCATCAACGTTAACTCACTTTCACCAGGGAAGCAGCTTCATGC CCAAGTCATTTCACTGGGTTTTGATCAAAATACAATCATGCTTCCCAGGCTTGTTAGTTTCTATGCAAGGTTCAATCTCT TTGATGATGCTTGCATTGTCACTGAGAGTTCTAGTAGTTTGGAGCCTTTGCATTGGAACATGCTAATCTCAATGTTTGTT AGAAATGAGCTATTTGTGGAGGCTCTTTCTGCTTATAGGAAAATGTTGAGGAAACAGGTTATACCTGATGAATTCACTTA CCCTTCTGTTCTTAAGGCTTGTGGTGAATTGTTAGATTGTGCTTCTGGGGTGGAGGTTCATAAGGCTATTGAAGTTGGTT CTATGGGTTGGAGCTTGTTTGTGCACAATGCATTGGTTTCTATGTATGCTAAGTTTGGGAAGCTGGAGGTTGCGCGTCAC TTGTTTGATAATATGCCGGAAAGAGATGATGTTTCTTGGAACACTATTATCAGCTGTTATGCCTCTAGGGGTACGTGGGG GGAGGCGTTTAAGCTTTTTGAAAGGATGCAGGAGGAGGGTGTTGAAATGAATATTATAATATGGAACACCATGGCTGGAG GGTACTTGCATGCAGGCAATTTCAAGGGGGCACTTAAACTGCTTTCTCAGATGAGAACATCCATTCATTTGGACCATGTT GCAATGGTTGTTGGATTAAATGCATGCTCTCACATTGGAGCCCTTAAATTGGGAAAGGAGATTCATGGTCACGCTGTGAG AACTGGCTTTGATGTTCTTGACAATGTGAGAAATGCATTGATCACGATGTATTCCAGGTGTGGAGACCTTGGCCATGCGT ATATGTTGTTTCAAAGAATGGAAGAGAAAGGTTTGATCACTTGGAACGCCATGCTCTCTGGATTTGCTCACATGGATCGA GTCGACGAAGTCTCCTTCCTTTTTAGACAAATGTTACATGAGGGCGCTGAACCTAATTATGTGACCATTGCAAGCGTTCT TCCTCTTTGCGCCCGCATAGCGAATCTACAGCATGGTAAAGAGTTCCATTGCTACATCATGAAGCGTGAGCAGTTTAAAG AATATTTATTGTTGTGGAATACTCTGGTGGACATGTATGCAAGGTCTGGCAAAGTTTTAGAAGCCAAAAGAGTGTTTGAT TCATTGACAAGAAGAGATGAAGTCACATACACCGCCATGATTAGGGGATATGGTATGAAAGGAGAAGGGCAAATGGCTCT AAATATATTTGAAGAGATGTGCAAGTTCAAGATTAAACCAGATCATGTAGCTATGGTTGCGGTTCTAACAGCTTGTAGTC ATTCGGGTCTTGTAGCTCAAGGGCAAGTTCTCTTTCAAGAGATGGTAGATGATTACGGAATAATTCCAAGAATTGAGCAC TATGCTTGCATGGCTGATCTTTTTGGGAGGGCTGGTCTTCTGAACAAAGCAAAGGAGATTATCACGAGGATGCCATACAA GCCAACACCAGCGATGTGGGCGACTCTCATCGGAGCTTGTCGGATCCATGGAAATACAGTGTTGGGGGAATGGGCTGCAG GGAAGTTACTAGAAATGAAGCCTGATCATTCAGGTTATTATATCTTGATTGCTAATATGTATGCAGCTGCTGGTTGTTGG AGCGAGCTAGCAGAAGTGAGAACTTATATGAGGAATCTGGGTGTGAAAAAAGCTCCTGGTTGTGCTTGGGTTGATGTTGG CGGTGAGTTTTCTCCATTTTTTGTTGGGGACACTTCCAACCCTCATGCTGGTGAGATTTATCCTTTGATGGATGGATTGA ATGAGCTAATGAAAGATGCTGGTTATATACGTAGTGAGGAGTTTTCATCCGAGGAGGATTTTGAGGAGATGAATATTGCA GGGAATTTATACTAATAGAAGTTAAACATGTGATCATAGATGGCTTTGTAAATACAAGAGATTGTTATTTGTTATTACAA TCCCATATACACGGCCTAAAAAGCAAAAAAAAACTGCTTAACCAATTGCTAGTTCAAGCAGCATAATCGGATTCTGCACA GTGGAAAAACTGAGGTTGGTTTTTGTTGTGATTCTTTGTTTAGTATAGCAATTTGTGACTTTGAATTTAGTTAAACAAAC ATGCTGCTACAATGCATGGCTGCAGACATGTTAATATCTGTTTGTTCCGTTGTGTTGTTTCTTCATCTGTTGTGTTCTCT TTTATCATCTATATTCTGCTGTTAAAGATTTAGTGATGCATATGATCACCATCTCCTTTTTTTGTCTTTCTTATTTCAAA ACTTATTAATTTTGCTGTGACATACAACTTTTAAGGCCTTAAATCTCTTTTTTTTTTCTGTACTAAGTATTTCTAAATTT ATTTAGTTAAATTTATTTTTTTCAGTATTATGTCTACTTTCCCCCCTTTTTTTTGAAATGTGATTGTCTAATGCTTTCTC ACAAATCAGAAAGTACTATTTGTTTCATATATAAAAGTTTTCTTTTAAACTTGAACCTGTCATATATAATATCTCTGTGA GAGTGATATCCTCCTCTTCTACAAGCATAGTATTAAGTTGTACCTGTCTTTTAAACTTGAATATAACTTATTCTTAAATG ATTGCATGCCTAAATTGTTTCTTAGAATTTAAAAATCAGATGTCTAATGGATCTATATAAAGTTTTCTTCATAAATAAAA TGTGTTCTGTCAATTATCAGCTATCCTGACCAATATTAGAATGTAATCCAGCTACTCCTCGTGGTGGACTAAAGAAGTAT CAAGTATGATACTATAACAACCAAATCAGAGTCACTTGCTTCTGTCCAGAGTGAGTTACACATGTCTAAAATCAAAACCA AGGATAATGGACACAAAACAAAGGTCGGAGATGATAAGGATGGAAACACCTTGCCTTCAGGACCAAGGAAGCAAAGAAGG CTGTGTCCTGATGGTCAGAAAGGAGCAGATGCATCCAAGATCATGTTAGACGCAACAGAGAACAGATGCAACAGGAAAAA CAGTCCTAGAACCTATTTGGTTTTCATTAGTTGCTTCAGAAGATCAGTAAGTTACTCTTTCGTTTTATGTGTTGATCTTA TAAATCATAAAAGGTTTAAGATCTGTGAACCCTTATTTGTTTGATTGATGTTATTATTCAGGAAAGGAGATGTTCCCTTG TCACAGGTTCCAGCATGTTGTTTAAGACTAAAGTAACTCTTCCAACTCTGTTATTTTCTGCTTTCTATTTTCCACCCCAA ATATTTTTGCTTGACTTTTACAATTTAGCTAGTAACTTTGACCTGTGAATTGAAAAGAAGGAAATTCCCCCTCCCCTACC TCGTTCTTTTTTGTGTCCAAATTGTACTAAATGCTAGTTGAAGTATACAGAAATGAGAAATGTGAGTTTATACACATGAT AGGAGCCCATATGGTCTTTTCCCTCTCCCGAGCTTAAGTTCATTACATGTTTTTCTTGGGCAAGTGAGTTAAGACTTTAG ACAACCACAAGAGTATCAGTTCTTTGTAATATTTGAAGTGATGTTAACCTCATGTGCAACATTACATTTATGTTTATTTA TTGAAGTTGGATAGTATGCTACCATATAGAATTAAGG
CDS sequence (LotjaGi2g1v0346000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTGTTCACATTGCATCCCTCAAGAATTTTGTATACCATGGCCACTTGTCAAACGCATTCAAATCTTTCCTTCA CATACAGCACCATGCTGCAGCTTCTTCTCCTGGGTTTTCCCATCTTCTCTTGCACCCCATTTGCACTCTTCTCTTGGGTT GCATCAACGTTAACTCACTTTCACCAGGGAAGCAGCTTCATGCCCAAGTCATTTCACTGGGTTTTGATCAAAATACAATC ATGCTTCCCAGGCTTGTTAGTTTCTATGCAAGGTTCAATCTCTTTGATGATGCTTGCATTGTCACTGAGAGTTCTAGTAG TTTGGAGCCTTTGCATTGGAACATGCTAATCTCAATGTTTGTTAGAAATGAGCTATTTGTGGAGGCTCTTTCTGCTTATA GGAAAATGTTGAGGAAACAGGTTATACCTGATGAATTCACTTACCCTTCTGTTCTTAAGGCTTGTGGTGAATTGTTAGAT TGTGCTTCTGGGGTGGAGGTTCATAAGGCTATTGAAGTTGGTTCTATGGGTTGGAGCTTGTTTGTGCACAATGCATTGGT TTCTATGTATGCTAAGTTTGGGAAGCTGGAGGTTGCGCGTCACTTGTTTGATAATATGCCGGAAAGAGATGATGTTTCTT GGAACACTATTATCAGCTGTTATGCCTCTAGGGGTACGTGGGGGGAGGCGTTTAAGCTTTTTGAAAGGATGCAGGAGGAG GGTGTTGAAATGAATATTATAATATGGAACACCATGGCTGGAGGGTACTTGCATGCAGGCAATTTCAAGGGGGCACTTAA ACTGCTTTCTCAGATGAGAACATCCATTCATTTGGACCATGTTGCAATGGTTGTTGGATTAAATGCATGCTCTCACATTG GAGCCCTTAAATTGGGAAAGGAGATTCATGGTCACGCTGTGAGAACTGGCTTTGATGTTCTTGACAATGTGAGAAATGCA TTGATCACGATGTATTCCAGGTGTGGAGACCTTGGCCATGCGTATATGTTGTTTCAAAGAATGGAAGAGAAAGGTTTGAT CACTTGGAACGCCATGCTCTCTGGATTTGCTCACATGGATCGAGTCGACGAAGTCTCCTTCCTTTTTAGACAAATGTTAC ATGAGGGCGCTGAACCTAATTATGTGACCATTGCAAGCGTTCTTCCTCTTTGCGCCCGCATAGCGAATCTACAGCATGGT AAAGAGTTCCATTGCTACATCATGAAGCGTGAGCAGTTTAAAGAATATTTATTGTTGTGGAATACTCTGGTGGACATGTA TGCAAGGTCTGGCAAAGTTTTAGAAGCCAAAAGAGTGTTTGATTCATTGACAAGAAGAGATGAAGTCACATACACCGCCA TGATTAGGGGATATGGTATGAAAGGAGAAGGGCAAATGGCTCTAAATATATTTGAAGAGATGTGCAAGTTCAAGATTAAA CCAGATCATGTAGCTATGGTTGCGGTTCTAACAGCTTGTAGTCATTCGGGTCTTGTAGCTCAAGGGCAAGTTCTCTTTCA AGAGATGGTAGATGATTACGGAATAATTCCAAGAATTGAGCACTATGCTTGCATGGCTGATCTTTTTGGGAGGGCTGGTC TTCTGAACAAAGCAAAGGAGATTATCACGAGGATGCCATACAAGCCAACACCAGCGATGTGGGCGACTCTCATCGGAGCT TGTCGGATCCATGGAAATACAGTGTTGGGGGAATGGGCTGCAGGGAAGTTACTAGAAATGAAGCCTGATCATTCAGGTTA TTATATCTTGATTGCTAATATGTATGCAGCTGCTGGTTGTTGGAGCGAGCTAGCAGAAGTGAGAACTTATATGAGGAATC TGGGTGTGAAAAAAGCTCCTGGTTGTGCTTGGGTTGATGTTGGCGGTGAGTTTTCTCCATTTTTTGTTGGGGACACTTCC AACCCTCATGCTGGTGAGATTTATCCTTTGATGGATGGATTGAATGAGCTAATGAAAGATGCTGGTTATATACGTAGTGA GGAGTTTTCATCCGAGGAGGATTTTGAGGAGATGAATATTGCAGGGAATTTATACTAA
Protein sequence (LotjaGi2g1v0346000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGVHIASLKNFVYHGHLSNAFKSFLHIQHHAAASSPGFSHLLLHPICTLLLGCINVNSLSPGKQLHAQVISLGFDQNTI MLPRLVSFYARFNLFDDACIVTESSSSLEPLHWNMLISMFVRNELFVEALSAYRKMLRKQVIPDEFTYPSVLKACGELLD CASGVEVHKAIEVGSMGWSLFVHNALVSMYAKFGKLEVARHLFDNMPERDDVSWNTIISCYASRGTWGEAFKLFERMQEE GVEMNIIIWNTMAGGYLHAGNFKGALKLLSQMRTSIHLDHVAMVVGLNACSHIGALKLGKEIHGHAVRTGFDVLDNVRNA LITMYSRCGDLGHAYMLFQRMEEKGLITWNAMLSGFAHMDRVDEVSFLFRQMLHEGAEPNYVTIASVLPLCARIANLQHG KEFHCYIMKREQFKEYLLLWNTLVDMYARSGKVLEAKRVFDSLTRRDEVTYTAMIRGYGMKGEGQMALNIFEEMCKFKIK PDHVAMVAVLTACSHSGLVAQGQVLFQEMVDDYGIIPRIEHYACMADLFGRAGLLNKAKEIITRMPYKPTPAMWATLIGA CRIHGNTVLGEWAAGKLLEMKPDHSGYYILIANMYAAAGCWSELAEVRTYMRNLGVKKAPGCAWVDVGGEFSPFFVGDTS NPHAGEIYPLMDGLNELMKDAGYIRSEEFSSEEDFEEMNIAGNLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 177 | 171 | 9.9E-13 | ||
| PANTHER | 48 | 157 | 110 | 2.6E-109 | – | |
| SUPERFAMILY | 88 | 272 | 185 | 1.35E-5 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.602 | ||
| TIGRFAM | 113 | 145 | 33 | 3.4E-5 | ||
| Pfam | 113 | 155 | 43 | 1.5E-8 | ||
| PANTHER | 164 | 242 | 79 | 2.6E-109 | – | |
| Gene3D | 178 | 277 | 100 | 2.4E-25 | ||
| ProSiteProfiles | 179 | 209 | 31 | 8.901 | ||
| TIGRFAM | 182 | 209 | 28 | 0.0024 | ||
| Pfam | 182 | 209 | 28 | 0.0034 | ||
| Pfam | 210 | 246 | 37 | 4.9E-9 | ||
| ProSiteProfiles | 210 | 244 | 35 | 12.704 | ||
| TIGRFAM | 212 | 245 | 34 | 1.3E-8 | ||
| ProSiteProfiles | 245 | 275 | 31 | 9.01 | ||
| PANTHER | 246 | 302 | 57 | 2.6E-109 | – | |
| TIGRFAM | 248 | 274 | 27 | 2.6E-4 | ||
| Pfam | 248 | 274 | 27 | 2.4E-4 | ||
| Gene3D | 278 | 415 | 138 | 2.4E-23 | ||
| ProSiteProfiles | 279 | 313 | 35 | 5.086 | ||
| PANTHER | 297 | 402 | 106 | 2.6E-109 | – | |
| ProSiteProfiles | 314 | 344 | 31 | 7.245 | ||
| TIGRFAM | 319 | 346 | 28 | 4.3E-4 | ||
| Pfam | 319 | 346 | 28 | 3.3E-5 | ||
| ProSiteProfiles | 345 | 379 | 35 | 10.983 | ||
| Pfam | 347 | 376 | 30 | 5.8E-5 | ||
| TIGRFAM | 347 | 380 | 34 | 6.0E-6 | ||
| PANTHER | 383 | 611 | 229 | 2.6E-109 | – | |
| ProSiteProfiles | 416 | 446 | 31 | 8.462 | ||
| Gene3D | 419 | 627 | 209 | 1.5E-34 | ||
| Pfam | 420 | 446 | 27 | 2.2E-4 | ||
| TIGRFAM | 420 | 446 | 27 | 3.6E-4 | ||
| Pfam | 447 | 494 | 48 | 6.3E-9 | ||
| ProSiteProfiles | 447 | 481 | 35 | 11.816 | ||
| TIGRFAM | 449 | 482 | 34 | 2.3E-8 | ||
| ProSiteProfiles | 482 | 517 | 36 | 6.752 | ||
| ProSiteProfiles | 518 | 552 | 35 | 6.434 | ||
| ProSiteProfiles | 584 | 618 | 35 | 5.996 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0346000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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