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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349400 |
| Transcript ID | LotjaGi2g1v0349400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|I3SIS2|I3SIS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82617063..82621895) extracted from Lotus japonicus Gifu genome v1.2.
ATCACTATTTTGTAATCAATTTAATTTCTTAAAAATATTTTGAACTCATTTTTTAGTTCATCTGCAAATTTGGGGTTGAA AAGTGAAGCAGGATCACACCGCAACAAACCAAACCAATCGATTCGGTTGAGCGAACAATGAATCACATCAGGAGCGGGTT GGTTACTATTGGGAGTTGCCGGAGCATGTCGACGGTGTCAAAAGCCGTCGCCGAAATCGCCGGCGTCGGCAAGACCAAGA CCCGGAAGGCTTCCAGTGAGCTCTGCACCTTCCTTGGCATCCCTCATCACTCTCGTTCCGAAATCTCCTTGATCATCTCC AACTTCATCAAACTCTACAATGCCAGGGTGGGTCTCATTCCATTTTTCACTTCTCTTTCCACACCCACCAACTGTTTGAT CAATGTACTCACTCAACAGTTGTAATATTTTTTTTCTGCAGAGTCCTGGTATAAAAAAAGATAAGATTTGGGAGCAGAAT TTGCAAACTCTGTTGCGTGGTAGAAGCAGTGTTGGCTTCCCTGAGATTGCTAAAATTTTATCCACGGAGTTCAGCAGTGG TGCCATCAATGTTAAGGATAGTGGCATGGACGCTTTCTCCGATTCAAAGGGGAAAGGCTCACAGAAGAAAGGGAAATCTT CAAAGAAGTAGACTTTCACAAGTTGGTATTGCTTAATCTGCAATTCTGCATCACAATGTTTGAGAGTTTGAATTTTGAAA ATAATTTGTCTGTTGTTGTTCTGAAAACTAATATTATTCTCTTTACTCCGCTTTAGAACTTTTGTTAGGCTTGGCCTAAT GGAGAAATGGTTTAATGCTTCAATGTTTATTTGAATTATGCAAGGTAGATTATGGTATCATTGGGATTTTCAGGTTATGA TGTTTTCACCATCTATTAGCTATATGTTATCTTATGCATTTTAGTTCCCACTTCCCATTGGCCTATGTATGTCTCTTCTA AAATGCTAAGCTTTAAAGACTGTTAGTGTCACTGCTAGCTCTTGTTGAATTTCCATTGAGCCGGTTGCTAGCTTCCCGCT GCCTAAACATTCTTAGTTAATTGGATGAGGAGGGAGGGGTTTTTGCTCATAGAGCAAGATGAGCAAAAACCCAGTTTTTA AATGCATTATCTTGTGTAGTAAACAAGGGTTGAGTCAATTGACAAAATTGAACATTGCCTACAGTTTGATTGAACTGAAA GGTCCATCTTTAACTAATGTAAACAATTAACATGTGTTCGATTTTTGGCATGCATTGTCCTTTCAATATGGCAATGTGAT AAACTTGATGTACAAGGGCATGTTTGTACACAAGAGAAAGAAAACTTATAAAAGCATAAGGTTAAATTTGGTGTGAGTTT CAGCCTTTTAAGTACCTCAACACTAAAGATGAAAAGTTAAATTTGGTTAACGTTCCAACTAAACAACGGGAATGAGTCTG ATGTACCAAGGAATAGAACTTCCATTATGTTTTTATTTGCCTTCTTTTTGTTGGTAGTGGAGGAGAAGGGAGATTTTTGC AACCATTCATTCAAAGGTTTTTGACAGTAGAACTAGAATATAAGACCTGTATCAAGGGGTTTCACTGTATCAGCGCATCT GCGCATGGCTGCATAATACTAAGGTGTGATTGAACCTTACGCCTCTGGTGCTCGATTTATGTGGAGGCCTTATTGGACCA CTAAGCTATCAGATTTTGCTCTTATCTTCTTTTTATATTTATACTGCAAAATCTTTATTAAATATTTATAAATAGTTTTG GTCATGGATGTCGAGTAATAGTGAATCTTTTTTGCTTCTGGACGTAAGCATTTTGATAACTTTTTTATGCTTCAAAATGT TTACTTCCTTAACTTCTTTGATTTATTAAGCCATCATGGAAAGCCTGATCTTTGATTGATTAAGGCTTTATCATGAATGA AATAACTTTGTGTGCATTACCTTATTGTTGTTTTGACTAATTACCTAACAGGCTAACACATAGTGAAAATAAACAATCTC AAGGACATAATTATGTTCTGTGTTAGATGGAATTAATTTGTCAAACTATGATCCTGCATGCTTCTATGCTTCTCCATTGC TTACATAAATGAGGCTGTAAACTATATTTTTCTTCTCCAAATTTAGCCGTAAACTAAATAAAGGAAAATCGTGTACATAG CTGGGAGAGTTGATGAAGTTCCATCAAAAGTCTTCATTCTTGAATTTTTCGTCAGCTGAATTAGTTCTTTATTTTGTTTG GACAATAGCTGAATCAGGTAAAAAAAATGTTAAAATTTTCTTTGCTATGTGTATGGGAAATCCGCCATAATTTAAATGTA GCTAACTCTATGTGGTGCTAGATAAACTATGGGTCGATAACCCGCAGACATATGTTTGGATATCCATTGACATTAGTGCG AACATGCGTTAACACTCACTTTGAGGTAAAAATTGAATATAACTCTTCACATGAATTAAGATGGATGTATTTTTATACGT TAACTCAAATGATATCCAAAACACAGGTGATGGACACAACAATAAGCAAATGATTCAGTTTGTGTTGGTTTTTCCGTTAG GTTCAGCATTCGAAACATTGAAATTCAGAATTGCGAGCTATGGAACTTCAAATGTGTAAGAGGCTCATGACCTCCATTCA TCCAACGCTGCTTCAAGTCGTGTAGTGAAACACAAACACATTGATTTTTTGGGAGGAAAATGACAATTGATACCTTGCAC ATCTTGCCCCTTTTAGTAACACCCATGATATTAATACAAATATTTGAGTGGTTATTTATTTACAAATCTCCCATGAATAG CAATTTTTAAACTGCATGCATGGATTGGGCTAAATGGGGGTAAACAACACTCTTGGGTCTAGGCCCAATGAAATTCATCC ACCTAAACTTGTTGTTAACAAAAACAAACAAAAAATTTAAAATAACAGAGTTGCCTAGAGGAGAAAGGAACATTTCTAAA ACCCTTCACCTCAAACTCTCACTCTCATTCTCACTCTTAGGTTTTCAGAACTGCGATCATGGCGGGAGTTAGGATTTTCG GTGCATACGCTGCCAGAGCTCTCATGGCGGCGGCGTCCACGGCGAAAGGCGCGGTCAAGAAGGAAGTCGCGCGCGCCCCG CCCAAGAAGCCTGCTACTGCTGCTCCCAGTAAAACCAAGAGCAGCACTAGCGGCATTCAGAAGGTGGTTCCCGTCTCTTC CGAGCTCGGAAAGTTTCTCGGTTCGCCGGAAGTCTCCAGAACCGACGCTGTCAAGAGAGTCTGGGAGTACATCAAGCTGC AGAATCTCCAGGTCTTCTTTCCATTTTCATTCACTCAATGTTGCTATTTTTCTTCGCGATGATTCGTATTTTCAACTGAT TTCTTGGTTTTCTGATGCTAACTATCGTGGTAGATCATGTGTTTCCATGTTAGGTTTAACTTTTGAGTTGATGTGTGTGC TTGTTGAGACGAAGGGATGATCACTCAGTTTCGCACTGATATATTTAATCTCAGTTTCATGTAATTTTTGGGGCAGCATT AGCAAATGCAATGTCATTTCATTGGTATCAAGTTTATCTAAGTCATCTCTATTTTCATTGTTTTGCTGTTTTTCGCCTTT TGCCCTTTTAGTGTGGTATCCTATTCTGTAATTGATGATATACATTGTATGAAGATAGATGTTATGTATGATGTAGTGAT AATTTGATTCTGTGAGGCTGATAGTTTATGATTATTTTTAATCAGGTTTCATGCTTGTTTCTGTCAGTGTTGTCAAATAG TGGATATCGTGGCCCTATAGCGCTATAGCATAACCCTCGCTCTGAGGGTTACTGCTATCCGCTATTTTCCGCTTTGAGGG CTTGACATAGTGGATTTTTGGCTTTCCACCAGTGTTGTCAAATGGCAGTTATAGTGGCGCTACAACGCTATAGTGTAGTG CTATGAGGGCTCACAACTATTCTGCTGAGGGTTTGAAATAGCGGATCTTTGGCTTTCCGTTATTTTCCGCAATCCACGAT TAACAACACTGCTTTCCACTATTTTCTGCGATTGACAACACTTGTTTCTGTAGTTCAATTGTGAGATGCAGCTGCTGATA ACATTCTTAATCCTTGTTGGATTTTCTTCTCCAGCTTATGCTTGCAATTTAATTGTGTTTTTTGCATCTTTTTTCTTTAG TCTCTTCATTGAATTTCTCTTGCTATTAATAAACCAATGGAAGCTTTCATGATATTTGTTACAGAAGCAGGGTAGTTTGT CTTGGATTATGGAAGTTTTCTCTCGTTGTCTGCTATTTTTGTCTCTTTTCAGTGTTGTCTGTCTCTACAATGGCATAACA GAGCTATTCTTTTGCAGAATCCTACAAATAAGAAGGAAATCTTTTGTGATGACAAACTGAAGACCATCTTTGAAGGGAAA GATAAAGTGGGATTCACAGAGATTGCCAGATTGCTGTCTAACCATTTTGTGAAATCAGTCTAATTGGATTCTTCTCGATG GTAACTCGTAATAGTACATTAAGTAGGGCTTTGTTATCTTAAGTACATGCTATGTCACGGGCTGCTAAAGAAACTTGGAA ATTTGTAAGATCTGACTTGAATTTGGGATTGAAAGTGGTGTCATTTTGTCACTGTTTGATTTCACATTGTTAGGATGACA TATATATTAGTATTTCCAAGTCATATATGTGCGTTCACCACTTCATTTCAAATCTACATGGTTATAATTATAAGATACTA TCTGCTTGGTATGACAATTATTCATCCCGCTCCCTGAATAGAATTTTATGTAAGGATGCAGTAGGATTGGAAAATTTGGG TATCGAACTTAGTTTAGTACCTTGTAAACCCAA
CDS sequence (LotjaGi2g1v0349400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCACATCAGGAGCGGGTTGGTTACTATTGGGAGTTGCCGGAGCATGTCGACGGTGTCAAAAGCCGTCGCCGAAAT CGCCGGCGTCGGCAAGACCAAGACCCGGAAGGCTTCCAGTGAGCTCTGCACCTTCCTTGGCATCCCTCATCACTCTCGTT CCGAAATCTCCTTGATCATCTCCAACTTCATCAAACTCTACAATGCCAGGAGTCCTGGTATAAAAAAAGATAAGATTTGG GAGCAGAATTTGCAAACTCTGTTGCGTGGTAGAAGCAGTGTTGGCTTCCCTGAGATTGCTAAAATTTTATCCACGGAGTT CAGCAGTGGTGCCATCAATGTTAAGGATAGTGGCATGGACGCTTTCTCCGATTCAAAGGGGAAAGGCTCACAGAAGAAAG GGAAATCTTCAAAGAAGTAG
Protein sequence (LotjaGi2g1v0349400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHIRSGLVTIGSCRSMSTVSKAVAEIAGVGKTKTRKASSELCTFLGIPHHSRSEISLIISNFIKLYNARSPGIKKDKIW EQNLQTLLRGRSSVGFPEIAKILSTEFSSGAINVKDSGMDAFSDSKGKGSQKKGKSSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 13 | 109 | 97 | 1.5E-41 | – | |
| PANTHER | 13 | 109 | 97 | 1.5E-41 | – | |
| Gene3D | 27 | 111 | 85 | 7.4E-7 | ||
| SUPERFAMILY | 32 | 107 | 76 | 3.71E-8 | ||
| Pfam | 36 | 104 | 69 | 4.6E-9 | ||
| MobiDBLite | 119 | 139 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0349400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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