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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0350000 |
| Transcript ID | LotjaGi2g1v0350000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G09280.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|K7LNC8|K7LNC8_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0350000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82666423..82669008) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCTCTCACAATACCAATTCCATTCTTTGGAGATTTTTCTTGGCTATTGTGATTGCAACCATTTTTACTCCAAACCT TAGTTCTGCAAAGAAATCCAAGATAATTGGCCTGAAAATGAATGTAATTGATCGATGTTGGAGACCAAATCCCGAATGGA GGAGGCATCGATCTCAACTAGCCACTTGCTCTGTGGGCTATGCTAGCAAGATGAAAAACAATATTGGTGATGACCTCATC CATTATAAAGTTACTGACCCTAGTGATGACCCAATAAATCCAAGACCTGGCACCTTGAGGTATGGAGCTTCGGTAATTCA AGGTAAAGTGTGGATCAAATTCCAAAGAGACATGAAAATTAGGCTTGAGAAACCTCTTCTCATTAGTAGTTTCACCACCA TTGATGGTCGAGGCGTAAACGTCAACATAGCTGATAATGCATGCTTGATGATCTATAAGGTAACTACCAACCCCAAACAT TATAAATGGTGTTTTCATGTATATACACATAGCTCACAAGTGTTTATTTGTTTCTAGACCACAAACATAATCATCCATGG CATTCGAATTCATCATTGCAAAGCTCAAGCTCCAGGAATGGTGATGGGGCCTAATGGAAAAGTTATGCCTTTGGGGCAAG TAGATGGGGATGCAATTAGATTGATTACAGCTTCAAAAATTTGGATTGATCATAACACGCTTTATGACTGCGAAGATGGC CTTCTTGATGTCACACGAGGTTCAACTAATGTGACTGTGTCCAACAATTGGTTTAGAGATCAAGACAAAGTTATGCTTCT TGGCCACGATGATGGATATGTCAGAGACCAAAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAACTGCAACC AACGTATGCCCAGGTTAATATTTATTCTTTTAGTTATCAAGTTAAAATATATACAAAATGTAAATTTACTAGAAAATATT TATTTGACTCATTAATGATAACAATAATAAAACATTGCAGAATTCGCTATGGATATGCACATGTAGCCAATAATCTTTAC CAGGGTTGGTTGCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCGAC TGCTGGAAATAAGGAGGTGATTAATTTTAGAATATTCATTTCAATTAGCTAGCTAATAATACATTAATGGAAATGGTTCT TAGTTCAAGTGATTTGAAGTATTTGTTTACATTTAAAATGATTTTAATTACTTGTATCTTACTATTTGTATAATGTGTAT AGGTAACGTGGAGAAAAGCTAGCCATACAAATGGGGATAGATGGGAATTCCATTCAGTAGGGGACGTTTTTGAAAATGGA GCCTCCTTCACCGAAACAAAAGGAAATGGTGGACGTGTGTGTAAGCCGAATTACAATGGGGAACAAGATTTTGAAGTTTC TGATGCCAAGTCTGTAAAATCATTGACAATGTGGTCGGGTGCACTTCGGTGCAGCAAAACTTCTATGTGTTAAATAGAAA AATTAGAAGAGGTACTTTGCTTAGATGAGGAATTTTGAAGCAAAGTTTGCATCATCAGTGTGGGATTAATGCTTCATAGA TAAAAGACTTATGTTAATCAAGTTATATTTGAATCAATGTTTTTATCTTTTATGTATCAATATTTTTTTCCTTTACTTGA AGTTTAAAAAGTCGTACTTATATTCACAAATACTCAAATCTGAGATATTTGCTTAAGCTAGCACAATTTTGTGGCAATTG ATTTATGCGGTTGGTGGTTGATAATATGATTTAAAACTATAATAAACTTTTATATAAATATTGATTAGAAGAAAATACAA AGAAATGCCAATATCAGGCACATGGTGACTCTAAAAGAAACACAAAATTCAAACAAATAATTTGCTGATCTGGAATCAGT GTAACTGATGACAGTTTCATAGGGCCAAAGCACGATTCATTATCGAACAATAAACAAACATAACATTCCAATAAACTATA TAAAGCACCATTCCAAGATGTCCAAATGCTAAGAATTAAGAACAGTTCAATGAAATTCATCAAGCTACTCCATCACAGGT TGATCAGTTTGATGGGGGTGAGGGAAGAAAAGGAACTGTTGGGAGGGTTGGCAGAGAAGGTAGTGTTAGCTTGGGTGCTG TTGGCAAAGGGAATGTGGGCAATGGTGGCAATGTGTTGGGCAACTGAGGTTGGCTGCTTGGTAATGGCGGCAATGTGAAT TTTGGCATTGTTGGTAATGGTGGCAATGTGAATTTCGGCATTGCTGGAAATGGTGGCAGTGTGGGTTTGGGGAAACTTGG CTGAGATGGCAACGGGGGCAATGTGGCCTTGGGGAGTGGTGGGAGGGTAGGAAGTCCCAATGCTGGAGCTGCTGTTGGAG CTTGCAGGAGGTGACGACCAGCTAGGCTTATCCTGGGGCTTGACAATAAAATTGCCACCAGCATACAAACAATGACAGAA TGCTTTGAAGTGGCCATTTTATGAAAGATCAGGGATGAGATCCTTTAACTAATTGGAGAACTTGTTTATGATGTTGTTTT GAGTTTGAAACACATCAAGTCGTGAT
CDS sequence (LotjaGi2g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTCACAATACCAATTCCATTCTTTGGAGATTTTTCTTGGCTATTGTGATTGCAACCATTTTTACTCCAAACCT TAGTTCTGCAAAGAAATCCAAGATAATTGGCCTGAAAATGAATGTAATTGATCGATGTTGGAGACCAAATCCCGAATGGA GGAGGCATCGATCTCAACTAGCCACTTGCTCTGTGGGCTATGCTAGCAAGATGAAAAACAATATTGGTGATGACCTCATC CATTATAAAGTTACTGACCCTAGTGATGACCCAATAAATCCAAGACCTGGCACCTTGAGGTATGGAGCTTCGGTAATTCA AGGTAAAGTGTGGATCAAATTCCAAAGAGACATGAAAATTAGGCTTGAGAAACCTCTTCTCATTAGTAGTTTCACCACCA TTGATGGTCGAGGCGTAAACGTCAACATAGCTGATAATGCATGCTTGATGATCTATAAGACCACAAACATAATCATCCAT GGCATTCGAATTCATCATTGCAAAGCTCAAGCTCCAGGAATGGTGATGGGGCCTAATGGAAAAGTTATGCCTTTGGGGCA AGTAGATGGGGATGCAATTAGATTGATTACAGCTTCAAAAATTTGGATTGATCATAACACGCTTTATGACTGCGAAGATG GCCTTCTTGATGTCACACGAGGTTCAACTAATGTGACTGTGTCCAACAATTGGTTTAGAGATCAAGACAAAGTTATGCTT CTTGGCCACGATGATGGATATGTCAGAGACCAAAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAACTGCAA CCAACGTATGCCCAGAATTCGCTATGGATATGCACATGTAGCCAATAATCTTTACCAGGGTTGGTTGCAATATGCCATTG GTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCGACTGCTGGAAATAAGGAGGTAACGTGG AGAAAAGCTAGCCATACAAATGGGGATAGATGGGAATTCCATTCAGTAGGGGACGTTTTTGAAAATGGAGCCTCCTTCAC CGAAACAAAAGGAAATGGTGGACGTGTGTGTAAGCCGAATTACAATGGGGAACAAGATTTTGAAGTTTCTGATGCCAAGT CTGTAAAATCATTGACAATGTGGTCGGGTGCACTTCGGTGCAGCAAAACTTCTATGTGTTAA
Protein sequence (LotjaGi2g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHNTNSILWRFFLAIVIATIFTPNLSSAKKSKIIGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYASKMKNNIGDDLI HYKVTDPSDDPINPRPGTLRYGASVIQGKVWIKFQRDMKIRLEKPLLISSFTTIDGRGVNVNIADNACLMIYKTTNIIIH GIRIHHCKAQAPGMVMGPNGKVMPLGQVDGDAIRLITASKIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFRDQDKVML LGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFIAPTAGNKEVTW RKASHTNGDRWEFHSVGDVFENGASFTETKGNGGRVCKPNYNGEQDFEVSDAKSVKSLTMWSGALRCSKTSMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| PANTHER | 5 | 393 | 389 | 1.9E-235 | – | |
| PANTHER | 5 | 393 | 389 | 1.9E-235 | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 25 | 30 | 6 | - | – | |
| Phobius | 31 | 393 | 363 | - | – | |
| Gene3D | 40 | 386 | 347 | 8.9E-100 | ||
| SUPERFAMILY | 62 | 383 | 322 | 2.2E-72 | ||
| PRINTS | 63 | 80 | 18 | 1.4E-38 | ||
| SMART | 117 | 314 | 198 | 9.1E-71 | ||
| PRINTS | 125 | 141 | 17 | 1.4E-38 | ||
| Pfam | 128 | 308 | 181 | 3.1E-26 | ||
| PRINTS | 189 | 210 | 22 | 1.4E-38 | ||
| PRINTS | 269 | 288 | 20 | 1.4E-38 | ||
| PRINTS | 291 | 310 | 20 | 1.4E-38 | ||
| PRINTS | 331 | 355 | 25 | 1.4E-38 | ||
| PRINTS | 364 | 387 | 24 | 1.4E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0350000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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