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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0355300 |
| Transcript ID | LotjaGi2g1v0355300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530; TrEMBL-Plants: tr|K7K445|K7K445_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83146676..83150872) extracted from Lotus japonicus Gifu genome v1.2.
CTGTAAATGAAGTTGAATTTGTAATGAGTGGATTCTGTGCTGTGCCTCAGCTTGAACCATTTTTGCTATCACTAGCAAAG TCATCAAAGTCCATAACACTGAAACAATGCAACCAAATCCATGCAAAGCTCATAGTCACCCAATGCATTTCACAAACCCA CTTAGCCAACACCCTTTTGAGTTTCTACTCAAAATCTTCCCACTTTCGCCATGCCCACCTTCTGCTCGACCAAATGCCTC ACAGGAATGTTGTTACATGGACAACCTTAATTTCCTCGCACCTTCGAGCTGGGTCTGTTCCAAAAGCATTCCAGTTGTTC AATGACATGCGTGTGATGGATGAGAGACCCAATGAGTACACCTTCTCTGTTCTGCTTCGTGCTTGTGCCACCCCTGCTTT GTGGAATGTGGGGTTGCAGATTCATGGTGTGCTTGTCCGCTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTTTGG TGTATATGTACTCCAACAATGGCAGTAACCTCAGGGATGCATGTTGTGTTTTTCATGACTTGTTGGAGAGAGACCTTGTT GCCTGGAATGTTATGATTTCTGGGTTTGCTCAAGTTGGAGACTTCTGTATGGTTCAGAGGTTGTTTTCTGAAATGTGGGA GGTAGAAGGATTGAAACCTGATAATAGAACTTTTGTTAGTTTGCTTAAATGTTGTTCTACATTGGGAGAGGTAATGCAAA TCCACGGGCTTGCATCCAAGTTTGGTGCTGAAACCGATGCTGTAGTGAGTAGTGCTATGGTTGACTTGTATGCCAAGTGT GGGGACGTGAGTTCTTGCAGGAAAATCTTTGACTCAATGGAGGAGAAGGATAATTTTGTTTGGAGTTCTATCATTTCAGG CTATACCGTAAATAATAGAGGAGAGGAAGCTGTGCATTTCTTCAAGGACATGTGTAAGCAAAGGGTGAAACCAGATCAGC ATGTGTTATCTAGCACTTTGAGAGCTTGTGTTGAAATAGAGGATTTGAACACAGGAGTTCAAGTGCATGGCCAAATGATA AAGAATGGGCATCAAAACGATTGTTTTGTAGCTAGTGTGTTGTTGACACTGTATGCCAATTTTGGTGGACTAAGGGATGC GGAAAAGTTGTTTAGAAGAATTGATGACAAAGATATTGTAGCATGGAACTCAATGATCTTGGCGCATGCTCAGCTGGGTC AGGGATCTAGTCGCTCTATGCAACTATTACAAGAACTTCATCGAACAACCTCCTTGCAAATTCAAGGTGCCACTCTAATT GCTATTTTGAAGTCTTGTAAGAATAAATCAGATTTACCTGCAGGTAGACAGATTCACTCACTTGTAATGAAATCAAGTGT AAGTCATCCTACTTTGGTTGGCAACGCATTAGTCCATATGTACTCTGAATGCGGACAGATTGGCGATGCGTTTAAAGCTT TTGTTGACATTGTGTGCAAAGATGATAGTTCTTGGAGTTCTATTATTGGAACTTATAAGCAAAATGGAATGGAATCAGAA GCTTTAGAGTTATGCAAAGAGATGTTAGCTGAAGGAATCACTTTTACCAGTTATAGCCTTCCGCTGTGTATTTCATCTTG CTCACAACTTTTAGCTATAAATGTGGGTAAACAATTCCATGTTTTCGCTATCAAGTCCGGTTACAACCATGATGTCTATG TCGGGAGTTCCATCATAGATATGTATGCTAAATGTGGACACATGGAGGACTCAAAGAAAGTATTTGATGCACAAGTAAAG CCAAATGAAGTAATTTATAATGCCATGATTTGTGGATATGCACATCATGGACAAGCAAAGCAAGCAATAGAAATATTCAC TATGTTAGAGAAGAATGGTGTAACCCCAAATCAAGTAACTTTCTTAGCTATGCTATCTGCTTGTAGCCATGCGGGTTATA TAGAAGATACTTTGAATTTATTTACATTGATGCTTTACAAGTACAAGATTAAGCCAGAATCTGAGCACTATTCATGCCTA GTTGATGCCTATGGTCGGGCGGGAAGGCTGGAGGAAGCTTACCAAATAGTGCAAAAAGACGGAAGTGAATCAGCATGGAG GACATTGCTTAGTGCTTGTAGGAATCATAATAACACAAAAATTGGAGAAAAATCTGCAAAGAAGATGATTGAATTGAATC CCAGTGATCATGCTTCATATATTCTTCTTTCAAACATTTACATAGAAGAAGGAAAATGGGAAGAAGCTCGTGACTGCAGG GAGAAAATGGCTAAAACTGGTGTGAAGAAAGATCCAGGAAGTAGCTGGTTGATCTGAGGAACAGAGACCCAGTGGGGGAT GTGTTCTATGCTAATGACTCATCATTACTGGAGTGAAGTATGATCCCTTGTGCCAACCGTCTTCTTCTTCAACCCGTCCA CTTGGTCATGTCATGTCTCCATAGGCAGGGTCTTTGCCATTGATTTGAACAACATATCTCATAACATAGCAGGCGCTGAG TGCTATCCCATCCACCTTGGAGCATTGAGCCGTTAACAAGCTGGTAAGCATCTACTTTTTGTACCAATGAAGCATAAGTA GCTATAAGGTGGTCAGACACGTTTTATGAAAATATGATTGCAGTTGCATTCCTCCCTTATATGGACATGTAGGCTCTATG CGAATGTTATTATTTTTTAATTTTGTCATCATTGAAATTGTTTAGCACAAGTCTGTTCATTTGTAAAACATATAGGTTCG TTGTTATTATATAGGTTTTCATGAAGTGATTAATTGGCAGTAGCTGTAAGAGAGAGGTATGGAGGGCACAAACAAAGCAT TGGAACCGTGATAAAAAGGCAATATAAAGGTATGCTTTGACATGTTTTTATTAATAATGTTAACTGGTTGTCTTCAAAGC ATAGAAGTAAGTGGAGGTTGACTTTTTTGTGTGTGTTTGTGTAGGGTTTTGAAGGGTTGTCATTTTACGTAAAAGGTGAA AGTAATAGCTGCAAAGTAGGTGGTGGCGTTTTTTTGGTTGATGATGATTGGCATAATGGCATGACACTAATGCTGAATCT AATGAAACTCATGACACAGCTCATCAATTGGCAATTAATGGATCATCTGACAACACCAACATGAACCTAAAGAGGCTTAG TTTCAAAGAAACTAGTAAATGAGATTTTAGTTCTTTGGGGATGGCATACACATTCTAATCTATACACAGTCTGCTAAAGC GAATGGCTTTTATGTCCGTAGAGGCGAGATTCTGAGAAGCAAAAAGAATAGTGAGTTATTGCAGCAAGAATTTGTGTAAC AAGTAAGTTCGTCATCTAGAGGACGTAAATTCTTAAGATAGGAGAGGAGGTGTGACCCGAGAGCTGAATCACATAATCAT CAAAGGTGACTCTTGTTTTATTGAATCACATAATCATTTGCTTCAATTCAAAAGAAAAGATTGAAATTCAATAGTTCTTC AATCTATTACAGGTTAGTTCTTGAATATATGTTTTAGCTTCTCATTGTGTTTCATGGACTTCAGTTCTTATTGTGCTATA AAATGATATGAAATACAAGAGGTGGTAGTTATCCTTCACTACCCTCATGATTTTCGTCAAATAAGACATATAATTTTGCC ACATCAACATTTCTTGCGCTTCTTTCAATATTCCTTTGTAACATATAACATTGCTGAAGTTTCTAGAGCTTAAGTGTCAA ATCCAATGGTTTCACCTCAGCGTTGTCGTCATCAGTGTTAACCAAGTCAATGAAATCGATCTTCTTAATGGGCTTCTCCA GCTGCGTGATATATGCCTTAGTGCCACCATATGCAGATTCTTCTGGCTTACTTTGTGGCGTTGGCGATGGTGCTAACATT CTACCAGCAACAGTATTATTCCCTGCAGATGAAAGAGCATGAAGCTGTGGTGGAAGTTGCATTTTCCTAACTGGTTGTGA AGAACCAACCTGGTCACCAGGACTGAAAAATATGTTTCTTCTCGGCTGTGACATGGTCATAGGTTGTGGTGGTGAGTGGA AAAACCAGCCATCATTGATGTTTTGCTGGGTCTCTATGCCTGTGGGAATTGGAAAAGTGGCTGGGAAGCGATGGGAAACA TGTTGTGTTTGGGAATAGAGCCTTCTCATGGCACTCTCTTCATGTTTAATGTGAGAGTCAACATGGGTTATGTCTATGAG GGCTTGAGTGCTCGGGAAAGCACTGTTGCAGTGTGTG
CDS sequence (LotjaGi2g1v0355300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGATTCTGTGCTGTGCCTCAGCTTGAACCATTTTTGCTATCACTAGCAAAGTCATCAAAGTCCATAACACTGAA ACAATGCAACCAAATCCATGCAAAGCTCATAGTCACCCAATGCATTTCACAAACCCACTTAGCCAACACCCTTTTGAGTT TCTACTCAAAATCTTCCCACTTTCGCCATGCCCACCTTCTGCTCGACCAAATGCCTCACAGGAATGTTGTTACATGGACA ACCTTAATTTCCTCGCACCTTCGAGCTGGGTCTGTTCCAAAAGCATTCCAGTTGTTCAATGACATGCGTGTGATGGATGA GAGACCCAATGAGTACACCTTCTCTGTTCTGCTTCGTGCTTGTGCCACCCCTGCTTTGTGGAATGTGGGGTTGCAGATTC ATGGTGTGCTTGTCCGCTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTTTGGTGTATATGTACTCCAACAATGGC AGTAACCTCAGGGATGCATGTTGTGTTTTTCATGACTTGTTGGAGAGAGACCTTGTTGCCTGGAATGTTATGATTTCTGG GTTTGCTCAAGTTGGAGACTTCTGTATGGTTCAGAGGTTGTTTTCTGAAATGTGGGAGGTAGAAGGATTGAAACCTGATA ATAGAACTTTTGTTAGTTTGCTTAAATGTTGTTCTACATTGGGAGAGGTAATGCAAATCCACGGGCTTGCATCCAAGTTT GGTGCTGAAACCGATGCTGTAGTGAGTAGTGCTATGGTTGACTTGTATGCCAAGTGTGGGGACGTGAGTTCTTGCAGGAA AATCTTTGACTCAATGGAGGAGAAGGATAATTTTGTTTGGAGTTCTATCATTTCAGGCTATACCGTAAATAATAGAGGAG AGGAAGCTGTGCATTTCTTCAAGGACATGTGTAAGCAAAGGGTGAAACCAGATCAGCATGTGTTATCTAGCACTTTGAGA GCTTGTGTTGAAATAGAGGATTTGAACACAGGAGTTCAAGTGCATGGCCAAATGATAAAGAATGGGCATCAAAACGATTG TTTTGTAGCTAGTGTGTTGTTGACACTGTATGCCAATTTTGGTGGACTAAGGGATGCGGAAAAGTTGTTTAGAAGAATTG ATGACAAAGATATTGTAGCATGGAACTCAATGATCTTGGCGCATGCTCAGCTGGGTCAGGGATCTAGTCGCTCTATGCAA CTATTACAAGAACTTCATCGAACAACCTCCTTGCAAATTCAAGGTGCCACTCTAATTGCTATTTTGAAGTCTTGTAAGAA TAAATCAGATTTACCTGCAGGTAGACAGATTCACTCACTTGTAATGAAATCAAGTGTAAGTCATCCTACTTTGGTTGGCA ACGCATTAGTCCATATGTACTCTGAATGCGGACAGATTGGCGATGCGTTTAAAGCTTTTGTTGACATTGTGTGCAAAGAT GATAGTTCTTGGAGTTCTATTATTGGAACTTATAAGCAAAATGGAATGGAATCAGAAGCTTTAGAGTTATGCAAAGAGAT GTTAGCTGAAGGAATCACTTTTACCAGTTATAGCCTTCCGCTGTGTATTTCATCTTGCTCACAACTTTTAGCTATAAATG TGGGTAAACAATTCCATGTTTTCGCTATCAAGTCCGGTTACAACCATGATGTCTATGTCGGGAGTTCCATCATAGATATG TATGCTAAATGTGGACACATGGAGGACTCAAAGAAAGTATTTGATGCACAAGTAAAGCCAAATGAAGTAATTTATAATGC CATGATTTGTGGATATGCACATCATGGACAAGCAAAGCAAGCAATAGAAATATTCACTATGTTAGAGAAGAATGGTGTAA CCCCAAATCAAGTAACTTTCTTAGCTATGCTATCTGCTTGTAGCCATGCGGGTTATATAGAAGATACTTTGAATTTATTT ACATTGATGCTTTACAAGTACAAGATTAAGCCAGAATCTGAGCACTATTCATGCCTAGTTGATGCCTATGGTCGGGCGGG AAGGCTGGAGGAAGCTTACCAAATAGTGCAAAAAGACGGAAGTGAATCAGCATGGAGGACATTGCTTAGTGCTTGTAGGA ATCATAATAACACAAAAATTGGAGAAAAATCTGCAAAGAAGATGATTGAATTGAATCCCAGTGATCATGCTTCATATATT CTTCTTTCAAACATTTACATAGAAGAAGGAAAATGGGAAGAAGCTCGTGACTGCAGGGAGAAAATGGCTAAAACTGGTGT GAAGAAAGATCCAGGAAGTAGCTGGTTGATCTGA
Protein sequence (LotjaGi2g1v0355300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGFCAVPQLEPFLLSLAKSSKSITLKQCNQIHAKLIVTQCISQTHLANTLLSFYSKSSHFRHAHLLLDQMPHRNVVTWT TLISSHLRAGSVPKAFQLFNDMRVMDERPNEYTFSVLLRACATPALWNVGLQIHGVLVRSGLERDKFAGSSLVYMYSNNG SNLRDACCVFHDLLERDLVAWNVMISGFAQVGDFCMVQRLFSEMWEVEGLKPDNRTFVSLLKCCSTLGEVMQIHGLASKF GAETDAVVSSAMVDLYAKCGDVSSCRKIFDSMEEKDNFVWSSIISGYTVNNRGEEAVHFFKDMCKQRVKPDQHVLSSTLR ACVEIEDLNTGVQVHGQMIKNGHQNDCFVASVLLTLYANFGGLRDAEKLFRRIDDKDIVAWNSMILAHAQLGQGSSRSMQ LLQELHRTTSLQIQGATLIAILKSCKNKSDLPAGRQIHSLVMKSSVSHPTLVGNALVHMYSECGQIGDAFKAFVDIVCKD DSSWSSIIGTYKQNGMESEALELCKEMLAEGITFTSYSLPLCISSCSQLLAINVGKQFHVFAIKSGYNHDVYVGSSIIDM YAKCGHMEDSKKVFDAQVKPNEVIYNAMICGYAHHGQAKQAIEIFTMLEKNGVTPNQVTFLAMLSACSHAGYIEDTLNLF TLMLYKYKIKPESEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACRNHNNTKIGEKSAKKMIELNPSDHASYI LLSNIYIEEGKWEEARDCREKMAKTGVKKDPGSSWLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 133 | 124 | 1.2E-18 | ||
| PANTHER | 22 | 133 | 112 | 1.1E-138 | – | |
| ProSiteProfiles | 44 | 74 | 31 | 6.204 | ||
| Pfam | 74 | 122 | 49 | 5.4E-15 | ||
| ProSiteProfiles | 75 | 109 | 35 | 10.896 | ||
| TIGRFAM | 77 | 111 | 35 | 2.2E-7 | ||
| ProSiteProfiles | 110 | 144 | 35 | 7.344 | ||
| PANTHER | 130 | 231 | 102 | 1.1E-138 | – | |
| ProSiteProfiles | 145 | 176 | 32 | 6.149 | ||
| ProSiteProfiles | 177 | 212 | 36 | 9.668 | ||
| Pfam | 177 | 224 | 48 | 4.4E-9 | ||
| Gene3D | 208 | 327 | 120 | 2.3E-25 | ||
| PANTHER | 232 | 342 | 111 | 1.1E-138 | – | |
| ProSiteProfiles | 245 | 275 | 31 | 8.473 | ||
| Pfam | 275 | 322 | 48 | 2.0E-7 | ||
| ProSiteProfiles | 276 | 310 | 35 | 10.698 | ||
| TIGRFAM | 279 | 311 | 33 | 2.1E-6 | ||
| ProSiteProfiles | 311 | 345 | 35 | 6.928 | ||
| Gene3D | 328 | 394 | 67 | 4.1E-7 | ||
| PANTHER | 333 | 438 | 106 | 1.1E-138 | – | |
| ProSiteProfiles | 346 | 380 | 35 | 7.574 | ||
| Gene3D | 395 | 535 | 141 | 8.1E-15 | ||
| PANTHER | 417 | 536 | 120 | 1.1E-138 | – | |
| ProSiteProfiles | 449 | 479 | 31 | 5.437 | ||
| ProSiteProfiles | 480 | 514 | 35 | 9.788 | ||
| TIGRFAM | 483 | 513 | 31 | 7.9E-4 | ||
| Pfam | 483 | 512 | 30 | 1.0E-4 | ||
| PANTHER | 522 | 742 | 221 | 1.1E-138 | – | |
| Gene3D | 536 | 628 | 93 | 7.4E-23 | ||
| ProSiteProfiles | 550 | 580 | 31 | 6.862 | ||
| Pfam | 555 | 575 | 21 | 0.3 | ||
| SUPERFAMILY | 565 | 741 | 177 | 1.95E-7 | ||
| Pfam | 580 | 628 | 49 | 9.3E-13 | ||
| ProSiteProfiles | 581 | 615 | 35 | 11.948 | ||
| TIGRFAM | 583 | 616 | 34 | 1.1E-6 | ||
| ProSiteProfiles | 616 | 651 | 36 | 8.221 | ||
| Gene3D | 629 | 754 | 126 | 5.6E-7 | ||
| ProSiteProfiles | 652 | 687 | 36 | 7.958 | ||
| Pfam | 655 | 677 | 23 | 0.0047 | ||
| TIGRFAM | 656 | 677 | 22 | 0.0018 | ||
| ProSiteProfiles | 715 | 749 | 35 | 9.021 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0355300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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