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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0362900 |
| Transcript ID | LotjaGi2g1v0362900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G27800.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800, mitochondrial; TrEMBL-Plants: tr|K7LTG8|K7LTG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0362900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86029139..86030896) extracted from Lotus japonicus Gifu genome v1.2.
GGTGTTCAAGAATACTATGCTGCTGTAAGACCAGTACGAGGTTGAACCAACTGAGTGTGTTAAGGAAGATCGAGTCCTCT CACACAATGCGCAGAGATTCAAAGGGTTTCTCGTTTTTCATACTGTCAAGGTAAAATTCAAATCCACACTGTTCGTTTCT GTTTAAAATTATTACTAGAGATTAAGATTTTGCGCAGCTTTAGATGAATTCAAATTTTTTTGATGTACCCTTTCATCTGT TTATTGATTTTTTGATTCCATTAAGATTAATTTGACATAGGTACTGAGTGAGGTTGGAAAATCTTGATTCTGAAGTCAAA ATCGATTCTGGTTAGCTTTTGAATGTTAGAATTGATTCTGATAATTGGACCTTTTTCCAAACATGCTATAAGGGACCAGT TTCATTGAGCTTTAGAGTATCTGGCAGCAAAAACAAGACTAAGATGTTCTCTTTTGGTAGAAATTGCTCAAAATATCGTA GCTACTTCAGGAGGAATGGTTCAAGTGAAAATGTATGGCAGAAATTTCCTGAGCCATCTGAGCTCAACAATGTCATTGGG GAAAATTCCCACGAGATGCGTTTCGTTCGTGATGCCCAGAAAGTTAATCACTTTTTGTTCCAAATCACTGCTAGTTATGT TCAGTTACCTGTCCTATTTGCACCCATTTGCTTTAATTCTTATTATTCGACCAAGGCTCCTTCAAGGTCTTACAGAAAAA GAGCTCGTAAGCGGTTTCTAAAATCCTGCAAGCCTACTCTAGATGAAGCTCAATTTCAGTTAGCACAGTCCCAGCTTCTC CCGAGGTTTACTCCTGAAGAACTAAGCAAGGTGATTGCTCTTCAAAGCGACCCTTTAGTTTGCTTAGAATTGTTTCACTG GGCGTCTCAGCAGCCTAGGTTTCGGCACGATGTGTCCACATTTCAAGTCACCATAAAGAAGCTTGGTGCTGCGAAAATGT ACCAGGAAATGGATGACGTCGTGAACCAGTTGCTTGCTGTTCCTTTTCTTGGTTCAGAGGCATTGTTCAACATGATTATA TATTATTTTACCGAGGCCCGGAAGTTGACTAGAGCCGTCCACATATTTAAGCACATGAAGAGTAGAAGAAATCTGAATTG CAATTTCAGGCCTTCCATTAGAACCTATAATATTCTTTTTGCTGCACTTTTGGGTAGAGGAAACAACTCCTATATAAACC ATGTGTATATGGAAACCATTAGATGTCTTTTCAGGCAAATGGTTCATGATGGGATAGAGCCTGATATTTTCTCGTTAAAT GCTATGGTAAAAGGTTACGTGCTTTCTCTTCATGTTAATGAAGCATTGAGGATATTTCATCAGATGGGCACGGTTTATGA GTGCCATCCCAACTCTTTAACCTATGATTACTTGATTCATGGATTGTGTGCCCAAGGAAGAACAGAGAACGCCAAAGAGC TGTGTCATGAAATGAAGACCAAAGGTTTCATCCCAAGTAGTAAATCTTATAATTCACTTGTCAATTCTTTGGCACTTGGT GGAGAAGTTGAGGTGGCAGTAAATTATCTGTGGGAGATGACTGAAAACCAGAGGTCAGCTGATTTTATTACATATCGGAC TTTACTGGATGAGATATGTAGACGAGGAAAAGTTCAGGAAGCGATGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTG TAGATGGTCATACTTACAGGAAGCTTCTTTATATGCTTGAAGATGAATGGGAACTCAATGAACAGAATTGATTCAGGT
CDS sequence (LotjaGi2g1v0362900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCTTTTGGTAGAAATTGCTCAAAATATCGTAGCTACTTCAGGAGGAATGGTTCAAGTGAAAATGTATGGCAGAA ATTTCCTGAGCCATCTGAGCTCAACAATGTCATTGGGGAAAATTCCCACGAGATGCGTTTCGTTCGTGATGCCCAGAAAG TTAATCACTTTTTGTTCCAAATCACTGCTAGTTATGTTCAGTTACCTGTCCTATTTGCACCCATTTGCTTTAATTCTTAT TATTCGACCAAGGCTCCTTCAAGGTCTTACAGAAAAAGAGCTCGTAAGCGGTTTCTAAAATCCTGCAAGCCTACTCTAGA TGAAGCTCAATTTCAGTTAGCACAGTCCCAGCTTCTCCCGAGGTTTACTCCTGAAGAACTAAGCAAGGTGATTGCTCTTC AAAGCGACCCTTTAGTTTGCTTAGAATTGTTTCACTGGGCGTCTCAGCAGCCTAGGTTTCGGCACGATGTGTCCACATTT CAAGTCACCATAAAGAAGCTTGGTGCTGCGAAAATGTACCAGGAAATGGATGACGTCGTGAACCAGTTGCTTGCTGTTCC TTTTCTTGGTTCAGAGGCATTGTTCAACATGATTATATATTATTTTACCGAGGCCCGGAAGTTGACTAGAGCCGTCCACA TATTTAAGCACATGAAGAGTAGAAGAAATCTGAATTGCAATTTCAGGCCTTCCATTAGAACCTATAATATTCTTTTTGCT GCACTTTTGGGTAGAGGAAACAACTCCTATATAAACCATGTGTATATGGAAACCATTAGATGTCTTTTCAGGCAAATGGT TCATGATGGGATAGAGCCTGATATTTTCTCGTTAAATGCTATGGTAAAAGGTTACGTGCTTTCTCTTCATGTTAATGAAG CATTGAGGATATTTCATCAGATGGGCACGGTTTATGAGTGCCATCCCAACTCTTTAACCTATGATTACTTGATTCATGGA TTGTGTGCCCAAGGAAGAACAGAGAACGCCAAAGAGCTGTGTCATGAAATGAAGACCAAAGGTTTCATCCCAAGTAGTAA ATCTTATAATTCACTTGTCAATTCTTTGGCACTTGGTGGAGAAGTTGAGGTGGCAGTAAATTATCTGTGGGAGATGACTG AAAACCAGAGGTCAGCTGATTTTATTACATATCGGACTTTACTGGATGAGATATGTAGACGAGGAAAAGTTCAGGAAGCG ATGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGTCATACTTACAGGAAGCTTCTTTATATGCTTGAAGA TGAATGGGAACTCAATGAACAGAATTGA
Protein sequence (LotjaGi2g1v0362900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSFGRNCSKYRSYFRRNGSSENVWQKFPEPSELNNVIGENSHEMRFVRDAQKVNHFLFQITASYVQLPVLFAPICFNSY YSTKAPSRSYRKRARKRFLKSCKPTLDEAQFQLAQSQLLPRFTPEELSKVIALQSDPLVCLELFHWASQQPRFRHDVSTF QVTIKKLGAAKMYQEMDDVVNQLLAVPFLGSEALFNMIIYYFTEARKLTRAVHIFKHMKSRRNLNCNFRPSIRTYNILFA ALLGRGNNSYINHVYMETIRCLFRQMVHDGIEPDIFSLNAMVKGYVLSLHVNEALRIFHQMGTVYECHPNSLTYDYLIHG LCAQGRTENAKELCHEMKTKGFIPSSKSYNSLVNSLALGGEVEVAVNYLWEMTENQRSADFITYRTLLDEICRRGKVQEA MRFLQELQEKDLVDGHTYRKLLYMLEDEWELNEQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 96 | 425 | 330 | 4.8E-46 | – | |
| ProSiteProfiles | 191 | 221 | 31 | 7.245 | ||
| ProSiteProfiles | 231 | 273 | 43 | 5.141 | ||
| ProSiteProfiles | 274 | 304 | 31 | 7.465 | ||
| Pfam | 277 | 301 | 25 | 0.034 | ||
| Gene3D | 291 | 435 | 145 | 3.8E-28 | ||
| Pfam | 309 | 357 | 49 | 2.8E-11 | ||
| ProSiteProfiles | 310 | 344 | 35 | 12.057 | ||
| TIGRFAM | 313 | 345 | 33 | 1.6E-7 | ||
| ProSiteProfiles | 345 | 379 | 35 | 7.815 | ||
| ProSiteProfiles | 380 | 414 | 35 | 10.227 | ||
| Pfam | 380 | 406 | 27 | 1.7E-5 | ||
| TIGRFAM | 382 | 412 | 31 | 8.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0362900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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