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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0367100 |
Transcript ID | LotjaGi2g1v0367100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ankyrin repeat-containing protein family; TAIR: AT1G07710.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620; TrEMBL-Plants: tr|A0A151TN11|A0A151TN11_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi2g1v0367100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86434923..86438359) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGTGAATCCAATGGATACACAAACTGTGCTGCAGCCACAAGCAAGCCCTCCAAGGAAAAAAATGGCCAAACAATTTA CAGGGAAAAGGGATGATGCACCTTTACACTCTGCAGCAAGGGCAGGAAATCTGGCAGCTCTGAAGGACACACTCAGTGGT GCTGAAGAAGGGGAATTGAGAGAGTTGTTGGTAAAGCAGAACCAAGCTGGAGAAACAGCACTTTATGTTGCTGCTGAATA TGGACATGTTGATATGGTGAGGGAGTTGATTAAACATTATGATCTTGCTGATGCTGGAATCAAAGCAAGAAATGGTTTTG ATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGGTTTGTCTTTGTTGTGGTCTTTTATTTACTTTGTTCTTGTGTAG TTTGTGCTTTTCAGGGTTCAGGATTCTTTGAAAACTTCACATGACACTGTCATGTTAACATTTTGTTTAATCTCTCTCTT TATACCTATTAGAGAGGTATGAGCCTCTAAATATCTATGAAGTGAGAGATAGACAAAGTTTCACATGACTGTTTCTTGAG GGAGGCTGCCTTCTCTCAGGCTAACAGTCTTCTACTTCTATTCGACTGCTCTATGACAGGTTTCCCTGTATCCTACTATC CTCTATCCAAATAGATATGTTCCTAGGAGCAGCTATTTCGATCTTTATATATTTTGTCATGTGAAGTTTCCACACGAGAG GATTTGGATTTATGAAAACCAATTTCTCAAGTTTCCACATGAGAGGATCCTAATTCGATTTTCATAGGGAATATAATTTT TGTTTTGTTTTGTTTTGCCTGTTGCAGATGTGCTGAGGATACTATTGGAGGCTCATCCTGAATTGTCAATGACTGTGGAT CCATCAAACACCACGGCGTTGCACACGGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTTCTTTTGGGATCAGGAAG TAGCTTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCACTCGGCTGCGAGGAACGGGCATTTGGAGGTTGTGA AATCACTTCTGGATAAGGAGCCCGTGATCGCGACACGGACTGATAAGAAGGGGCAGACGGCGCTTCACATGGCGGTGAAG GGGCAAAGTCTTGAGGTGGTGGTGGAGCTGATAAAAGCAGACCCTTCAACAATAAACATGGTTGATAATAAGGGTAATGC GGCGTTGCATATAGCAACCAGGAAGGCCAGAGCTCAGGTAACTTAGTCTATGCCTGCCATAATTCTGCTAATGTTTACTA TAAAAAAAATTCACATATAAGGTTGTGATGAATATCACTACTCAATCTTTGTCACAAATTGGAGACATTTATCTTAAGCT ATCTTGAGTCAGGCATTTAGTGCTTGGTAACTGGTAAGTGCTTGTTCCCGCCACAAATGAAAATGATAAGAATATATTTG GGTAACATTTGGGTTGAAATCTGATCTAAGAGTTTCTGCTATGACCTATTACTTAGTTGGTCCCCTTGCATTGTTTGTAT TAGAATTTGGACTAGGCATGACTCTACCCAAAAAACTAGCTGGGGTGGGGGGGGGATTGCACTACCCTTCTATAAGGACT TATATGAGACTGACAACCCTCATGTTCAGAGCTAGGCATCTAGAGTGGAAAGTTTGCAGGAGTGGACATACCAAATTTAG ACTTGAACAATTTTCCAGCTCAACCATATGTGCAGTCATACCAAGTTTCCAACTTCTATAAATGTCAAATATGTTATTCA GCCAGTCAATGTTTGATTTGTGATATTCATAACATTGTTCAAGTACAGGTCTTTGTTAGCTGAGGCCTAGGTCTCGCAGT ATGATCCTTTTTGAAGATTATAGTCCTTAGCTTCTAAATTCTGAAAGTGTCTTTGAGACTGTGTTAGTCGGACACCATAT AAATTATTGGGACAATCTCTTACTGATTTGGTTATTGGAAAATATGAAAAACATAAAAAGTAAAGAAATTTCTGAGAACA AGACCTTATTTTAATCCCTAGATTCTTAAGTTGAATCAACTACCAAAAATAATGTTGAAACATTCTTGACTTGGAATCAA TCTTAATCCATTTTCACATTGATGGCAAATGCATTATTGGGGTAAAGGAACAGGATTAATGCATGTTTGGAAATTCAACT ACAATTGATTCTGAAGTCAGAATCAATCATGGGGAGAAACTATTATGTGAGTAGCTTCTAGACTTAAGAATTGACTCTGA AAAAAAGAGAAGCAGATCCAAACATGTCATTAGTATTAAGTAATGACATGGAATAAGATATTCATCATGAAGGAAACAGA TGCAACTGTAAAGGGTAGCATTAGATACATTTTAAAAACCATCCTTTTCTACTTACCTACTAGCAGGAAGTGTAATGAGT AATGACCCTATGTGCATCTGAGTCATCTCAATCTATCCCTCGAATTCAACTCTTCTTCAATTTGCTTTAATGCTGATGAA CTCATTACAGAATTCAATATCTATTTCAAAGTTGTTGGATTAAATTAAAGTTACAGGCTGAATTTCTAATATTTGTTTGT GCAGATTATTAAGTTGATACTTGGACATTCAGAAACAAACGCCTTGGTTGTTAATAAGTCTGGTGAAACTGCATTAGACA CTGCTGAGAAAACCGGGAATTCTGAAATTAAAGACATTTTGGTGGAACTTGGTGTTCAAAGTGCCAAATCTATAAAGGCA AAGCCAGCAACCGGCACAGCCCGAGAACTGAAACAAACAGTTAGTGACATAAAGCATGAAGTCCACTACCAGCTAGAACA CACGCGCCAGACGCGAAAAAGCGTGCAAGGCATCGCGAAACGCCTCAACAAAATGCACGCTGAAGGGCTAAACAATGCAA TCACCTCCACGACCGTGGTCGCAGTCCTCATCGCGACAGTGGCCTTCGCGGCCATCTTCGTCGTCCCGGGCCAGTTTGTT GATGATCCGAAGCAAATTCCTAAGAAGATGACGCTCGGTGAAGCGAACATAGCCCCACAGCCTGCCTTTCTCATCTTCTT CGTGTTCGATTCTATCGCGCTCTTCATTTCACTGGCCGTGGTGGTGGTTCAGACGTCGATCGTCATTATAGAAAGCAAGG CCAAGAAGCAGATGATGGCCATTATTAACAAGCTAATGTGGCTGGCTTGTGTTTCAGTTTCTGTGGCCTTCTTGGCTTTG TCCTTTATTGTGGTAGGGAAGGATCAGAGGTGGCTTGCAATTGGAGTAACAATTATAGGGACTACTATAATGGCTACAAC TTTGGGCACCATGAGTTATTGGGTCATTAGGCACAGAATTGAGGCCTCAAATTTGAGGAGCATTAGGAAATCTTCAATGG GAAGCAGGTCAAGGTCTTTTTCAGCATCTGTTTTATCAGATTCTGAGCTACTGAACAATGTAATGTACGCGATATAG
CDS sequence (LotjaGi2g1v0367100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACACAAACTGTGCTGCAGCCACAAGCAAGCCCTCCAAGGAAAAAAATGGCCAAACAATTTACAGGGAAAAGGGA TGATGCACCTTTACACTCTGCAGCAAGGGCAGGAAATCTGGCAGCTCTGAAGGACACACTCAGTGGTGCTGAAGAAGGGG AATTGAGAGAGTTGTTGGTAAAGCAGAACCAAGCTGGAGAAACAGCACTTTATGTTGCTGCTGAATATGGACATGTTGAT ATGGTGAGGGAGTTGATTAAACATTATGATCTTGCTGATGCTGGAATCAAAGCAAGAAATGGTTTTGATGCACTCCACAT TGCTGCCAAACAAGGGGATTTAGATGTGCTGAGGATACTATTGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCAT CAAACACCACGGCGTTGCACACGGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTTCTTTTGGGATCAGGAAGTAGC TTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCACTCGGCTGCGAGGAACGGGCATTTGGAGGTTGTGAAATC ACTTCTGGATAAGGAGCCCGTGATCGCGACACGGACTGATAAGAAGGGGCAGACGGCGCTTCACATGGCGGTGAAGGGGC AAAGTCTTGAGGTGGTGGTGGAGCTGATAAAAGCAGACCCTTCAACAATAAACATGGTTGATAATAAGGGTAATGCGGCG TTGCATATAGCAACCAGGAAGGCCAGAGCTCAGATTATTAAGTTGATACTTGGACATTCAGAAACAAACGCCTTGGTTGT TAATAAGTCTGGTGAAACTGCATTAGACACTGCTGAGAAAACCGGGAATTCTGAAATTAAAGACATTTTGGTGGAACTTG GTGTTCAAAGTGCCAAATCTATAAAGGCAAAGCCAGCAACCGGCACAGCCCGAGAACTGAAACAAACAGTTAGTGACATA AAGCATGAAGTCCACTACCAGCTAGAACACACGCGCCAGACGCGAAAAAGCGTGCAAGGCATCGCGAAACGCCTCAACAA AATGCACGCTGAAGGGCTAAACAATGCAATCACCTCCACGACCGTGGTCGCAGTCCTCATCGCGACAGTGGCCTTCGCGG CCATCTTCGTCGTCCCGGGCCAGTTTGTTGATGATCCGAAGCAAATTCCTAAGAAGATGACGCTCGGTGAAGCGAACATA GCCCCACAGCCTGCCTTTCTCATCTTCTTCGTGTTCGATTCTATCGCGCTCTTCATTTCACTGGCCGTGGTGGTGGTTCA GACGTCGATCGTCATTATAGAAAGCAAGGCCAAGAAGCAGATGATGGCCATTATTAACAAGCTAATGTGGCTGGCTTGTG TTTCAGTTTCTGTGGCCTTCTTGGCTTTGTCCTTTATTGTGGTAGGGAAGGATCAGAGGTGGCTTGCAATTGGAGTAACA ATTATAGGGACTACTATAATGGCTACAACTTTGGGCACCATGAGTTATTGGGTCATTAGGCACAGAATTGAGGCCTCAAA TTTGAGGAGCATTAGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGCATCTGTTTTATCAGATTCTGAGCTAC TGAACAATGTAATGTACGCGATATAG
Protein sequence (LotjaGi2g1v0367100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTQTVLQPQASPPRKKMAKQFTGKRDDAPLHSAARAGNLAALKDTLSGAEEGELRELLVKQNQAGETALYVAAEYGHVD MVRELIKHYDLADAGIKARNGFDALHIAAKQGDLDVLRILLEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLGSGSS LATIARSNGKTALHSAARNGHLEVVKSLLDKEPVIATRTDKKGQTALHMAVKGQSLEVVVELIKADPSTINMVDNKGNAA LHIATRKARAQIIKLILGHSETNALVVNKSGETALDTAEKTGNSEIKDILVELGVQSAKSIKAKPATGTARELKQTVSDI KHEVHYQLEHTRQTRKSVQGIAKRLNKMHAEGLNNAITSTTVVAVLIATVAFAAIFVVPGQFVDDPKQIPKKMTLGEANI APQPAFLIFFVFDSIALFISLAVVVVQTSIVIIESKAKKQMMAIINKLMWLACVSVSVAFLALSFIVVGKDQRWLAIGVT IIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSASVLSDSELLNNVMYAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 352 | 352 | - | – | |
PANTHER | 1 | 540 | 540 | 0.0 | – | |
MobiDBLite | 1 | 30 | 30 | - | – | |
PANTHER | 1 | 540 | 540 | 0.0 | – | |
Gene3D | 11 | 127 | 117 | 1.5E-19 | ||
ProSiteProfiles | 26 | 296 | 271 | 55.972 | ||
Pfam | 27 | 89 | 63 | 6.8E-7 | ||
SUPERFAMILY | 30 | 294 | 265 | 4.15E-55 | ||
SMART | 65 | 94 | 30 | 0.006 | ||
ProSiteProfiles | 65 | 88 | 24 | 9.271 | ||
Pfam | 93 | 160 | 68 | 8.5E-13 | ||
ProSiteProfiles | 100 | 132 | 33 | 10.713 | ||
SMART | 100 | 129 | 30 | 0.0012 | ||
Gene3D | 128 | 320 | 193 | 1.6E-39 | ||
ProSiteProfiles | 134 | 166 | 33 | 11.514 | ||
SMART | 134 | 163 | 30 | 0.077 | ||
Pfam | 167 | 227 | 61 | 1.3E-12 | ||
SMART | 168 | 197 | 30 | 1.2E-4 | ||
ProSiteProfiles | 168 | 200 | 33 | 11.568 | ||
SMART | 202 | 232 | 31 | 0.0013 | ||
ProSiteProfiles | 202 | 235 | 34 | 9.805 | ||
SMART | 236 | 264 | 29 | 43.0 | ||
SMART | 270 | 299 | 30 | 2300.0 | ||
Pfam | 351 | 467 | 117 | 7.5E-27 | ||
Phobius | 353 | 378 | 26 | - | – | |
TMHMM | 356 | 378 | 23 | - | – | |
Phobius | 379 | 404 | 26 | - | – | |
Phobius | 405 | 427 | 23 | - | – | |
TMHMM | 405 | 427 | 23 | - | – | |
Phobius | 428 | 447 | 20 | - | – | |
Phobius | 448 | 468 | 21 | - | – | |
TMHMM | 448 | 467 | 20 | - | – | |
Phobius | 469 | 473 | 5 | - | – | |
Phobius | 474 | 499 | 26 | - | – | |
TMHMM | 477 | 499 | 23 | - | – | |
Phobius | 500 | 541 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0367100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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