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LotjaGi2g1v0379300.3

Overview

Field Value
Gene ID LotjaGi2g1v0379300
Transcript ID LotjaGi2g1v0379300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP-binding protein; TAIR: AT3G51300.1 RHO-related protein from plants 1; Swiss-Prot: sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11; TrEMBL-Plants: tr|Q8S2V3|Q8S2V3_MEDTR Rho-like GTP-binding protein; Found in the gene: LotjaGi2g1v0379300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87620942..87622912) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGCGCTTCGAGGTTCATCAAGTGCGTTACTGTTGGAGATGGAGCTGTTGGCAAAACCTGCTTGCTAATTTCCTACAC CAGCAACACCTTCCCCACGGTCTCTTCTTTCTTCCTCTCTTTTTCTTTTCTCTCAATTTCCTGCATTTTCTTTTTCTTTG AAAGAAAGAAAAAACATTCCCAATTTGGAAAATGGGGTGATGAATAAAATTTGGAAATGTGAAATTCAGTTTTGGAAAAG AATTGAAGATGTTTCTTTAGGTGACAACATTTGTAAATAATGATTTAAAATTATGCATTTGGATATTATTAATTCAAAGG TGGAAATGGATGTGATAATTGATACGTGATATCGATTCGGAGTTTGTATATTTTTTGTGGCAAGAGTGGCTGGTAATCAT CAATTTAACCTTCCTATTTTGGGTGGAAACAGGATTACGTGCCGACTGTTTTTGACAATTTCAGTGCGAATGTGGTTGTC AATGGAAGCATTGTTAATCTGGGTTTGTGGGACACTGCTGGTAATGTTGTGTGATTACATTTAGATTTCTGCAAATTCTT TAATGTTTGAAGTTCTCTCTGGATTTATTGTGTTATTTGTGGAACAGGGCAAGAGGATTATAACAGATTAAGACCCTTGA GTTACCGTGGTGCCGATGTTTTCATACTTGCTTTCTCTCTGATAAGCAAGGCCAGTTATGAAAATGTCTCAAAAAAGGTA CTTATCCCACTTTACTGTGGTGTCCCCTGTGTTTTTTAGATGTATTTTTACTTATTTCCTTTGAAAATAATAGAAGGTTT CTTTATGACCTGTAATGGATAATATACAGACTGTGTCATGTGTTAATAGAACATTTAATTTTTAGGAAGTTTCTGATGCA TTACATGTGTTGGTTTCATTTTCAGTGGATTCCAGAGTTGAAGCATTATGCTCCTGGTGTCCCCATAATTCTGGTTGGCA CTAAGCTTGGTAAGTTTACTGCGGCATATTGCATAATGTGATGCTGATGTCATCATACCATACATTCATTAGACGCTTCT TTCCAGCATAATTATTTATTTATTTGTGTTCTGTGTTATGATAAAATCATATAAACTTAACTCAATGGATTTCATGATCA ATAAATGTTGACTTTAGATACAATATCTTCGGAATTTTCCATTTTTTGAGTCATGAACCGCTGAACCAGTTCTTTATGTT GCCAAAACAGGGTGGAATTCTGGTGCATTTTATTCTCATTTTCTTTAGATTTTCATCTCCTTCCAACATATCTAATACTT TGATTATGGTCTATGTTTCAGTTTTTGTGGTTGATTGTTAGTTTTATTCATGAATTGTATGTGGTGAGGTTGGCCCTATC TCCAGATATGAATTAATTAGTTGCAAATAATCTCTTAGTAAGATTCATCCTGTTCTGTTGAGAGTTGAGACAGTGTTAGT TCAGGGTCTCAGTAAGTTGATAAACCGTTTTGCTCAATTGAAGAGACACTGCTTGTTACCTGACCACTGCATATTCTGTT TGATGATTTTCTCACCTAAGAATTAATTACTTATTTTTTGTGACTTATAATGAAACAGATCTCCGGGATGATAAGCAGTT CTGCATAGACCATCCTGGTGCTGTTCCCATTACCACGGCTCAGGTAAATATTGCTTCTGGTGCTCTGAGTCTTGTTTGAT TCTTTAACAAAATTAAACCTGACATGTGCAACCCATTATAGGGAGAAGAGCTTAGAAAGCTGATTAATGCACCCGCTTAC ATTGAATGCAGTTCGAAAACACAGGAGGTACATGCTTATTTCTGATTTTTTTCTTATTCACAATGATTAATTTAGCATGA AGGTTAAACTTTTGTGACATTTATTTCAGAACGTGAAAGCGGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCT AAGCAAAAGAAAAAGAAGAATAAAGCACAAAAGGCCTGTTCAATATTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0379300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCGCTTCGAGGTTCATCAAGTGCGTTACTGTTGGAGATGGAGCTGTTGGCAAAACCTGCTTGCTAATTTCCTACAC CAGCAACACCTTCCCCACGGATTACGTGCCGACTGTTTTTGACAATTTCAGTGCGAATGTGGTTGTCAATGGAAGCATTG TTAATCTGGGTTTGTGGGACACTGCTGGGCAAGAGGATTATAACAGATTAAGACCCTTGAGTTACCGTGGTGCCGATGTT TTCATACTTGCTTTCTCTCTGATAAGCAAGGCCAGTTATGAAAATGTCTCAAAAAAGTGGATTCCAGAGTTGAAGCATTA TGCTCCTGGTGTCCCCATAATTCTGGTTGGCACTAAGCTTGATCTCCGGGATGATAAGCAGTTCTGCATAGACCATCCTG GTGCTGTTCCCATTACCACGGCTCAGGTAAATATTGCTTCTGGTGCTCTGAGTCTTGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0379300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQVNIASGALSLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24072
1 143 143 8.4E-98 –
ProSiteProfiles
PS51420
1 153 153 19.7
IPR003578
PANTHER
PTHR24072:SF288
1 143 143 8.4E-98 –
Gene3D
G3DSA:3.40.50.300
1 152 152 8.9E-50 –
SMART
SM00173
4 153 150 7.3E-10 –
SUPERFAMILY
SSF52540
6 127 122 4.57E-44
IPR027417
CDD
cd04133
6 142 137 3.79061E-110 –
TIGRFAM
TIGR00231
7 128 122 3.2E-33
IPR005225
SMART
SM00175
7 152 146 3.0E-13 –
PRINTS
PR00449
7 28 22 1.2E-28 –
Pfam
PF00071
8 127 120 1.1E-42
IPR001806
SMART
SM00174
9 152 144 3.6E-75 –
PRINTS
PR00449
30 46 17 1.2E-28 –
PRINTS
PR00449
47 69 23 1.2E-28 –
PRINTS
PR00449
109 122 14 1.2E-28 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0379300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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