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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380800 |
| Transcript ID | LotjaGi2g1v0380800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related thaumatin family protein; TAIR: AT4G36010.1 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|P83332|TLP1_PRUPE Thaumatin-like protein 1; TrEMBL-Plants: tr|I1LI21|I1LI21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0380800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87726341..87728601) extracted from Lotus japonicus Gifu genome v1.2.
TGAGTACTATTACTAGTAATTTTTTTTTTTCATTTGAAAATGGCGTATGCAAAATCATCCCTAAAAATACAGACAGTATG CCGACCTTGACATTGGCGGTTTGTGCATGCATGTGCCCTGCTAAAGTGGGACCAAGACACGTACCCTCTACCCAGTGGGC AATGGGCAGTGACCCCACAAAAACGCACATGACCCACACTTAATTCTATATATATCCACTTCCCCCCCCCATCTTCCAAT TCCCACTCAGTTTTCAAATAACATTCATCATCACATTCTCATTCCTTCTAACAATGGCAGTTTCAATTCAATTAGCTACC ATTTTTGTCACTCTAATTTTGTTTCAATACATAACATATTCATATTCAACAACATTCTCAATAGTCAACAAGTGCAGCTA CACAGTCTGGCCCGGAATTCTAACAGGCGCCGAAACAACCCCGCTGTCCAACACCGGCTTCGTTCTTCAGCCCGGCGAGT CCAACACCCTCCCCATGCCACCAAACTGGTCCGGCCGCCTATGGGGCCGGACACTCTGCACTCAAGATACCACCAGGAAA TTCTCCTGCGCCACAGGCGACTGCGGCTCCTCCACCTTAGAATGCGTAGGAGGAGGCGCAGCCCCGCCGGCCACTCTCGC CGAGTTCACCTTAAACGGCGCCGGCGGGCTTGATTTCTACGACGTCAGCCTCGTCGACGGTTACAACCTCCCAATGACGG TGGAGCCTCAGGGAGGTACCGGAGGCGGGAACTGCACGTCGACGGGGTGCGTGGTGGACCTGAACGCGGCGTGCCCGACG GAGCTGAAGGTGATGGGCGGCGGAGAAGGCGTCGCGTGCAAGAGCGCGTGTGAAGCGTTTGGAGATCCGCAGTATTGTTG CAGTGGAGCTTACGCGACGCCTGATACGTGTAAACCGAGCTCGTACTCGCAATTCTTCAAGAGCGCGTGCCCACGCGCTT ATAGTTACGCGTATGATGATGGCACCAGCACCTTCACCTGCGCTTCTGCTGATTACACCATCACTTTCTGCCCCATACCA TCCACAAGGTAATATATTTTATTTTATTCACCGTTTTTCTTTTCTTTTTCCCAATAGCTAATTATGACTTTTTTTTTTAA AAAAAAATTATTTGGTGAGTTAGTTGATTGGTTTTTCTTAGTTGTTAAAACGTGTTTTGGGACAGGGGAATATTGTTGTG GAAATTTTATTCGATTTTTGAGAAAATGAAAGTTGGGTTGAATGTCAACAAGGGACCAATTATGGGTGTGGTATCAACTA TCAAGTTAGATATGGTTGTCACGTTTCTTTTGAAGATTTTTTGGGTTTATTTATAAATTTTTTAGTTCAGATTTGAGTGT TATAGTTTTTAATTGCGTGTTTGAATTTGAATGCAGTTCAATCAAGTCAGGGAACGGAAAATTCCCAGTGGCGGTGGACA CATCTGGAGGGAATGTGGACAGGAGGACAACCACCAGTTTGATGGCGGTGGTAGTTGCCTCTGTTTTGGTGGCGTTTTGG TTACTTAATTAGTTTGCCATTGTCAACATTACATGGCCGGTGAATTTGGTGGAGTATGACTTTTTATGTGCCGGTTTGGT ACCATTAGAGAAAGTATGAAATAAAAAATAACACATCGCGAGAGGCACTTTTTATTCGAGATGTGTCATTTTTTTCATTT TCATACTCTTTAATTGGTGGTAGTCTCAATTGATTCCTCAAGTAGCTGAATGAGGAATCAGGTCACATTGGCAATTATTC AACTTGGTGCATGTTCAACAGAGTCAGCACTTGTGCAAAGAATGACACTTCTCATCAACTTGATATTCATTGGATCATGT GTTAATGTTTCCATCGAACACTTGTTAGATTTAGATTCAGTGATTTACAGACAGGATTAGGCAGGTAGCATTACATCAAC TCATGAATCTCACACCATTCATGTGGGGCTGTCCTCTACCTGAAGAGACCGAGGCATCTTTGGAACTTGAAATTCAATAG TTTATTAGTATGAATAAAATAGCTATAGGATACTACTCAATTTGCTCCAATTGTAAATATGAACATTTTTAAAATGAAAT GAATGGAGTGCAATTTTGTCACTAGCTGGACATGTTATTTTTTTGCAACTGCCTCCTAATGGATCCAACTAGATGGATAC GGCGTGCCTTTGACTTCTTTTCTCGCTAAAGGTGTATGTAATTGATATATCTCATATATATTTTTAATAAATTTTAGATG AGGTTGTCTAAATCACCCTGG
CDS sequence (LotjaGi2g1v0380800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTTTCAATTCAATTAGCTACCATTTTTGTCACTCTAATTTTGTTTCAATACATAACATATTCATATTCAACAAC ATTCTCAATAGTCAACAAGTGCAGCTACACAGTCTGGCCCGGAATTCTAACAGGCGCCGAAACAACCCCGCTGTCCAACA CCGGCTTCGTTCTTCAGCCCGGCGAGTCCAACACCCTCCCCATGCCACCAAACTGGTCCGGCCGCCTATGGGGCCGGACA CTCTGCACTCAAGATACCACCAGGAAATTCTCCTGCGCCACAGGCGACTGCGGCTCCTCCACCTTAGAATGCGTAGGAGG AGGCGCAGCCCCGCCGGCCACTCTCGCCGAGTTCACCTTAAACGGCGCCGGCGGGCTTGATTTCTACGACGTCAGCCTCG TCGACGGTTACAACCTCCCAATGACGGTGGAGCCTCAGGGAGGTACCGGAGGCGGGAACTGCACGTCGACGGGGTGCGTG GTGGACCTGAACGCGGCGTGCCCGACGGAGCTGAAGGTGATGGGCGGCGGAGAAGGCGTCGCGTGCAAGAGCGCGTGTGA AGCGTTTGGAGATCCGCAGTATTGTTGCAGTGGAGCTTACGCGACGCCTGATACGTGTAAACCGAGCTCGTACTCGCAAT TCTTCAAGAGCGCGTGCCCACGCGCTTATAGTTACGCGTATGATGATGGCACCAGCACCTTCACCTGCGCTTCTGCTGAT TACACCATCACTTTCTGCCCCATACCATCCACAAGTTCAATCAAGTCAGGGAACGGAAAATTCCCAGTGGCGGTGGACAC ATCTGGAGGGAATGTGGACAGGAGGACAACCACCAGTTTGATGGCGGTGGTAGTTGCCTCTGTTTTGGTGGCGTTTTGGT TACTTAATTAG
Protein sequence (LotjaGi2g1v0380800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSIQLATIFVTLILFQYITYSYSTTFSIVNKCSYTVWPGILTGAETTPLSNTGFVLQPGESNTLPMPPNWSGRLWGRT LCTQDTTRKFSCATGDCGSSTLECVGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMTVEPQGGTGGGNCTSTGCV VDLNAACPTELKVMGGGEGVACKSACEAFGDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASAD YTITFCPIPSTSSIKSGNGKFPVAVDTSGGNVDRRTTTSLMAVVVASVLVAFWLLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PIRSF | 1 | 291 | 291 | 2.2E-107 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 276 | 274 | 3.3E-149 | ||
| PANTHER | 3 | 276 | 274 | 3.3E-149 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| ProSiteProfiles | 25 | 247 | 223 | 45.678 | ||
| Gene3D | 26 | 247 | 222 | 3.9E-98 | ||
| Phobius | 26 | 277 | 252 | - | – | |
| SUPERFAMILY | 26 | 247 | 222 | 6.67E-85 | ||
| PRINTS | 27 | 39 | 13 | 2.7E-16 | ||
| CDD | 27 | 246 | 220 | 7.14949E-122 | – | |
| SMART | 28 | 247 | 220 | 2.3E-122 | ||
| Pfam | 32 | 247 | 216 | 5.5E-85 | ||
| PRINTS | 75 | 86 | 12 | 2.7E-16 | ||
| PRINTS | 127 | 143 | 17 | 2.7E-16 | ||
| PRINTS | 237 | 246 | 10 | 2.7E-16 | ||
| Phobius | 278 | 295 | 18 | - | – | |
| TMHMM | 278 | 295 | 18 | - | – | |
| Phobius | 296 | 296 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0380800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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