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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389200 |
| Transcript ID | LotjaGi2g1v0389200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT4G36550.1 ARM repeat superfamily protein; Swiss-Prot: sp|O23225|PUB5_ARATH U-box domain-containing protein 5; TrEMBL-Plants: tr|G7KEW9|G7KEW9_MEDTR Ubiquitin-protein ligase; Found in the gene: LotjaGi2g1v0389200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88512349..88517249) extracted from Lotus japonicus Gifu genome v1.2.
TTTATAACAAAAAGCTGCAATATATTATGTATATTAATGTTGTTTTGTTTCATCTTTCATGGACTTAGTCATGGAAAATT TCTCACGTTGAAGGGTCTTTGTTTCTCTTTTGTTAATATCATGCTTAGGAGAAGACTTTCGTAGTTGTTTCATTTGTACA AATCATTATCCTTTTCATGGTCTCACATCATGCTTGCTTTGCTTTCACTATACAATAAAGATCATCATTTAGCCCTTTTT ATTGGTTGGTGTTTCTTTCTTCTTTTTTTTCTTCCATATTTGTCGTCAAGTCTGAGATTTGTTGTTTACGCGGTTGAGAT CCTGTCCTTTTAGCCTCTCTCTTTCTCTATCCTTTGTGCTAAGTTTTATTGGACTTTGTTATACGTGACTACGTGAGGTA GAGGGAATCAACGTGCGGAAGAGAAGAAGAGACTGAGATATTATGAAAAATTCATTGAAGCTTTGCTTTTTGTTCATCTT GTTCATGTAGAGTAGAGCTGCAAGGAAACAAGTTGCTTACTATGAAATCAGTTAGTTGAATCGGTGCTAGTGATCTTATT GGTTGAAGACAAAACACAAAGACTTTCTTTCTGTTGGAACTCTTTTTCTGTAAGCAGAGGAAGGAGGTTTCTTCTTAATT ATCACCACCATTCTAGGTAATTTATTCACTTTCGTTTGCTATAAATGGTTACTTTTAAACTTTCTATTTCTCCCTTAGAT TCAAACAGAGCTCAGCTCAGTGTGAACCGCATAGGTTGCGGTTGTGGCTATTATGGACAAATGAGTGTTGATGCGGCCGC AATTGTGGCCGTGATGCCCTAGTGAGGACTTCAAAACCCTCTACGTTGTGGCTACAATTGCGGTTGAGAAGAGACAGAGA TTATGAAAATTCCATTGAATTGTTGCTTTTTGTTCATCTTGCTTATCTTTGGTAGAGCTGCAAGGAAACAAGTTGCATAC TATTAAATTAGTAATCTAATTAGTTGAGAAAGAAGCTTTTTATTATCACCATAGTTTTAGGTAATGCATTCTCTTTTGTT TTGTATTGACTTGCTTAATTAATGTTCTTTCCTTGACTAATCTTTAGCTGCAGAACAGGACACTCCCCTTGATGAGAACT GATAGTGGTGAAGAAGGGGACAAGTTACAGAATCCCCGTTCCTTTCAGGTGCATAAATATAATTGAATTTCATTATTATG TCTATTGAGGAAACTGAGGAATGAGGATGCTTTTCAGACCTTGTATTTCCAATACTAATTAGGATATCTAAGTCAAACTA CACTAGGATATTAGAACTAAGCATTTTATTGATCGCGATTCATGTTAACAGGTACATAGTAAGTTGTGCATAGAACTAGT GAGATTAGTGGACAGAATCTCAAAAATATTTCCAGACATAGAGGCGGCACGGCCGCGATGCTCATCAGGAATAGAGTCTC TATGCTTGCTCAACAACTCAATTGATAGAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGTA TGTGCAGTTTTTTTTGTTTTGAGAAATCAATCTATATAACTTTGTCCAATATTGTCATAAACCAACTATCTCAAAAGTTT TCAATTATATTTCTAACAAGTTCGCTCACACAAAACCCATTCGCTCTTGGCTTGCTTGGACAACGCACTAGGCTGCTTAC CTTCTACCTTGTACCAAATTCAACTTTTTATTAGAATAACCACTTGATCATAGAGACGTTGACATCATGAAATGAGTCAA CTATCTCAAAAGCTTAAACTGTTAGATGAAGGGTGAAACATGAATTTTCAAACAAATTTACATTAGTAGTAACTAAAAAA CTCAAAGAAATATGAACGCCATTTGTTCTTAATCAAGCTTTTTAGAATCAAATAAACATTAGTGGCTAATAACACATGAT CTTATTACTTGTCAATGGATTTTACTAGTTAGTTGCATGATAGATTCATGGGTTTTGATATTACTTACAGGCTGTGACAG GGGATACAGTACTCTTAAGATGCCAAAAGGTAGCAAGGTTATTAGAGCAAAGCTTAATCCAGATTCAGGATATGGTTCCA GTTATGCTGGCTGTAGAGGTTAGTAAAGTCAATTTCCTTTCTTCACCATCCAGCCTCAAATGTATACCCCTGAATCAAGC ACTTATTAACTAGCCTCATCTTATGTTAATTTGATCTTTTTTGCTGCACAATATACACAAAAATTGATGATCTGAATTGG CACTTGCAGGTTTCTAGAATAATTGATGATCTTGAGTGTACTACATTTGTTCTGGACTCAGCTGAAGAAGAGGCTGGAAG GGTTGTGAGAGAGTTGCTTCAGCAAGGTACTTCAACCTCAGACTCAGTGGATGATTCCGAAGTTAAAGCTCTTCAGTTCG CAGCACCACGACTGAACATAACATCCCGAAAGGCCATCGTAGTAGAGAGCCGATCTATCAAGAAGTTGTATGATAAAGTT GGACCAACTGACCAGAAAAAGAAGGTGATCTTGAGATATCTTCTGTATCTACTGAAAAAACACGGGAATTCTATCGCGGT AGAACAATCGGTGACGGCCTATTCTCGTCATGAAGAACCAACAGCAAGAAAGAGTTCCAATCATGATTCTCCACGGAGCC ATCATGTTGAACCACAGCCATGTTTGAACTATGGTCAGAACCGAACTCATACCAATGAGTTGGGTATTGCACCTCCTGAG GAATATATATGCCCAATATCTTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCGGAATCACTTATGAAAGGATGTG GATAAAAAAGTGGTTTGATGAGGGTAAAGTTGTATGCCCAAAAACCAATAAGATGTTAACACATATGACATTGACTCCAA ATGTTGTCATGAAGGACCTAATATCAAAGTGGTGCAGCAACATTGGAGTCTCCATTCCTGACCCAACTAGGCAAGCAGAA GATTCTTACCCATGGGATGCTTCAATCACTTCCGTTCAGAGTTTTGGAAGTTATTTCAATGATTTGAACTTGCCAATGGA TCATAGTAACATGTCAATTGGATCATTGGATAGTAGTTTTAGTTCAGATGCCTCACGAGTTAAGATCGTTCAGGACTTAA ATTCGATCTCGATCAAGGCTAGTGACAAGCCTCACAGCCACATTCATCGAGCTCGTGAGGGGATGCGTGATACAGACTTG ATGCTGTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAGTGCAAGGTCATTGAAGATCTGAAAGATCATTTGAAAAG CAACTGTCAAGCTTTTTCTTCTGTGTCACCAGAGAATTTTGTTGAACCGCTGGTCAGATTTCTTAGCAAATCATATGATC TGCATGATTTAAAAGCGATGAGAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAATTGCAGGCATGGTTTCTTTTCC TCTTTCTCAATTTCCGACTTTGTGCACAGCTAATAACTTTGGAGCATGGTCTTTTCAATGATAAATTCAATTTATCTGTC TGATACATAGTCAAAGTTCTTCCAATTTAAATGTTTTATAAATGGTTGGAACATATTTGGTGGTTTTGCAACAAGCAAGG CTTTCTTCAAGCTTCCCAAGCTTCTCCCTGACTTAAAATTGCTAGCTTAAACCTGCTTTTGATATTAAAATGACTTTTTG TGTGTGGTTTTCATGCAGAAATGGAATGACTAATTTAAGTGAAGACACATTCATTACATTGGCTAGTTTTCTTGATTCAG AAGTGATAGGGGATGTTCTTACCATAATGGAAGAGATGTCTGTGCATGGCTACAGTAAAGCTAAACTTGCAGCATCCAGT TCACTCACTTCTCTTTTAAATATACTCGATTCTGGTAACAAAGAGTTCCAACAAAAAGCTATTAGAATAATGTACAACTT GTCCTTCAATGGGGAAGTTTTCCCCCACATGCTATCTCTTAAGTGCATCCCAAAATTGCTGCCATTTTTCAAAGACAGAG CTGTTTTGAGATACTGCATACAAATATTGAAAAATATATGTGATACTGAAGAGGGTAGAAACTCTGTTGCTGAAACTAAG GGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGAAGTAATGAGGAACAAGAACATGCACTTGCTGTTCTAGTGTC TTTATGCTCTAAACGTGTGGATTACTGTAAGCTGGTTATGGATGAGGATGTTATTGCTCCTCTTTTTTACATCTCCCAGA ATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAACTGCTCAATCTTTTGAGAGATGTTAAATGTGTTGAGAATGAAGAT TGCTCTGAACCAAATACCAACAACAACTCCTCTCAAGGTTCCAGCAGTCACCCTGAAGAAAATAAACCATCAAAGAGTTC TTCCACATTTCGGAAGAAACTAGCAGTGTTCTCAAAATCCATTTCACATGCATCAAAAACCAAAAAGTGAGAATGAGTTC CTCTCCACGCTGCTTAATTTTGCTCTGCAATAACAAAAGGTTGTGTGATTGTGTATATAGTTGGTCTTATTATGATTATA ACTTAGTCTTTTAACATTTCGATTTAGAGCTTGTTAAGATAGTTGAATAGCTTTACGACCAAGGACACACTTTAATTTGT TTATTCTTATTGTATATATATTGAACACTTCTTCGTTTTGAGCCCTGACTGTAAATAGATAGTAGTGTAATTTCTGCTAT TTTATGTCTTTTTGGTTTGATTGCAAGGACTCCTAAACATTTGGTAATGTTGTAGAATGGACTCATCTTTTACCATCCCA ATTCCATATTAGAAATCTTATTTTATTGATCTTGTGAAATGTGAAAAAGGAATATCCCACGACATTTTTCTCTTGTCTCG GATTAAATATTCACAATTTTT
CDS sequence (LotjaGi2g1v0389200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACTGATAGTGGTGAAGAAGGGGACAAGTTACAGAATCCCCGTTCCTTTCAGGTACATAGTAAGTTGTGCATAGA ACTAGTGAGATTAGTGGACAGAATCTCAAAAATATTTCCAGACATAGAGGCGGCACGGCCGCGATGCTCATCAGGAATAG AGTCTCTATGCTTGCTCAACAACTCAATTGATAGAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTAC CTGGCTGTGACAGGGGATACAGTACTCTTAAGATGCCAAAAGGTAGCAAGGTTATTAGAGCAAAGCTTAATCCAGATTCA GGATATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTACTACATTTGTTCTGGACT CAGCTGAAGAAGAGGCTGGAAGGGTTGTGAGAGAGTTGCTTCAGCAAGGTACTTCAACCTCAGACTCAGTGGATGATTCC GAAGTTAAAGCTCTTCAGTTCGCAGCACCACGACTGAACATAACATCCCGAAAGGCCATCGTAGTAGAGAGCCGATCTAT CAAGAAGTTGTATGATAAAGTTGGACCAACTGACCAGAAAAAGAAGGTGATCTTGAGATATCTTCTGTATCTACTGAAAA AACACGGGAATTCTATCGCGGTAGAACAATCGGTGACGGCCTATTCTCGTCATGAAGAACCAACAGCAAGAAAGAGTTCC AATCATGATTCTCCACGGAGCCATCATGTTGAACCACAGCCATGTTTGAACTATGGTCAGAACCGAACTCATACCAATGA GTTGGGTATTGCACCTCCTGAGGAATATATATGCCCAATATCTTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCG GAATCACTTATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAAAGTTGTATGCCCAAAAACCAATAAGATGTTA ACACATATGACATTGACTCCAAATGTTGTCATGAAGGACCTAATATCAAAGTGGTGCAGCAACATTGGAGTCTCCATTCC TGACCCAACTAGGCAAGCAGAAGATTCTTACCCATGGGATGCTTCAATCACTTCCGTTCAGAGTTTTGGAAGTTATTTCA ATGATTTGAACTTGCCAATGGATCATAGTAACATGTCAATTGGATCATTGGATAGTAGTTTTAGTTCAGATGCCTCACGA GTTAAGATCGTTCAGGACTTAAATTCGATCTCGATCAAGGCTAGTGACAAGCCTCACAGCCACATTCATCGAGCTCGTGA GGGGATGCGTGATACAGACTTGATGCTGTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAGTGCAAGGTCATTGAAG ATCTGAAAGATCATTTGAAAAGCAACTGTCAAGCTTTTTCTTCTGTGTCACCAGAGAATTTTGTTGAACCGCTGGTCAGA TTTCTTAGCAAATCATATGATCTGCATGATTTAAAAGCGATGAGAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAA TTGCAGAAATGGAATGACTAATTTAAGTGAAGACACATTCATTACATTGGCTAGTTTTCTTGATTCAGAAGTGATAGGGG ATGTTCTTACCATAATGGAAGAGATGTCTGTGCATGGCTACAGTAAAGCTAAACTTGCAGCATCCAGTTCACTCACTTCT CTTTTAAATATACTCGATTCTGGTAACAAAGAGTTCCAACAAAAAGCTATTAGAATAATGTACAACTTGTCCTTCAATGG GGAAGTTTTCCCCCACATGCTATCTCTTAAGTGCATCCCAAAATTGCTGCCATTTTTCAAAGACAGAGCTGTTTTGAGAT ACTGCATACAAATATTGAAAAATATATGTGATACTGAAGAGGGTAGAAACTCTGTTGCTGAAACTAAGGGATGCATATCT TCTGTTGCTGAAATACTTGAGACAGGAAGTAATGAGGAACAAGAACATGCACTTGCTGTTCTAGTGTCTTTATGCTCTAA ACGTGTGGATTACTGTAAGCTGGTTATGGATGAGGATGTTATTGCTCCTCTTTTTTACATCTCCCAGAATGGAAATGATA AAGGAAAGGAAAGTGCCTTGGAACTGCTCAATCTTTTGAGAGATGTTAAATGTGTTGAGAATGAAGATTGCTCTGAACCA AATACCAACAACAACTCCTCTCAAGGTTCCAGCAGTCACCCTGAAGAAAATAAACCATCAAAGAGTTCTTCCACATTTCG GAAGAAACTAGCAGTGTTCTCAAAATCCATTTCACATGCATCAAAAACCAAAAAGTGA
Protein sequence (LotjaGi2g1v0389200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTDSGEEGDKLQNPRSFQVHSKLCIELVRLVDRISKIFPDIEAARPRCSSGIESLCLLNNSIDRAKLLLQHCSECSKLY LAVTGDTVLLRCQKVARLLEQSLIQIQDMVPVMLAVEVSRIIDDLECTTFVLDSAEEEAGRVVRELLQQGTSTSDSVDDS EVKALQFAAPRLNITSRKAIVVESRSIKKLYDKVGPTDQKKKVILRYLLYLLKKHGNSIAVEQSVTAYSRHEEPTARKSS NHDSPRSHHVEPQPCLNYGQNRTHTNELGIAPPEEYICPISSRLMYDPVIIASGITYERMWIKKWFDEGKVVCPKTNKML THMTLTPNVVMKDLISKWCSNIGVSIPDPTRQAEDSYPWDASITSVQSFGSYFNDLNLPMDHSNMSIGSLDSSFSSDASR VKIVQDLNSISIKASDKPHSHIHRAREGMRDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNCQAFSSVSPENFVEPLVR FLSKSYDLHDLKAMRAGTQLLLEFVNNCRNGMTNLSEDTFITLASFLDSEVIGDVLTIMEEMSVHGYSKAKLAASSSLTS LLNILDSGNKEFQQKAIRIMYNLSFNGEVFPHMLSLKCIPKLLPFFKDRAVLRYCIQILKNICDTEEGRNSVAETKGCIS SVAEILETGSNEEQEHALAVLVSLCSKRVDYCKLVMDEDVIAPLFYISQNGNDKGKESALELLNLLRDVKCVENEDCSEP NTNNNSSQGSSSHPEENKPSKSSSTFRKKLAVFSKSISHASKTKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 758 | 742 | 1.2E-288 | – | |
| PANTHER | 17 | 758 | 742 | 1.2E-288 | – | |
| MobiDBLite | 230 | 259 | 30 | - | – | |
| MobiDBLite | 231 | 249 | 19 | - | – | |
| SUPERFAMILY | 264 | 348 | 85 | 1.9E-26 | – | |
| ProSiteProfiles | 271 | 345 | 75 | 29.608 | ||
| Gene3D | 272 | 343 | 72 | 3.9E-23 | ||
| Pfam | 273 | 340 | 68 | 1.5E-18 | ||
| SMART | 275 | 338 | 64 | 1.6E-25 | ||
| CDD | 276 | 318 | 43 | 5.02962E-19 | – | |
| Gene3D | 435 | 718 | 284 | 2.1E-23 | ||
| SUPERFAMILY | 436 | 706 | 271 | 1.94E-24 | ||
| Pfam | 533 | 662 | 130 | 2.0E-6 | – | |
| MobiDBLite | 716 | 748 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi2g1v0389200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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