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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0390800 |
| Transcript ID | LotjaGi2g1v0390800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT5G66750.1 chromatin remodeling 1; Swiss-Prot: sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1; TrEMBL-Plants: tr|I1J8V7|I1J8V7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0390800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88691469..88697464) extracted from Lotus japonicus Gifu genome v1.2.
ACTCCACTCCACTCAAGACAAACCCCACTGTTTTTCGCGCTCGGTTCATCTTCCCCACTCTTCTCTCTTCCAGGTACTGT AAATCGCAACCCTAGCGTCATTGCTTTTCAGTTTTTCTGTTCTCTTTTCATTTTCCCCTTTTGATTTTGTGATTGTAACC GTTCCTGCACATTTTAGGGTTTGAAAAAATGGTGACGAAGGACAAAGTGAAAACCGAAGATCCTGCTGTTGAATCTCCCA CTTCGGTCCTAGAAGATGAGGTATGCTATTTTCTGTTTTCATTTCTTCGATTCCCTCTTTTTCAGTAACCGCTTTCAAAT CGTGAATGTTAAATGATGATGTTATTTCAGTAACCGTTACTCGCAAACTATGATCTAATCTTCAACTGAACTGTTGATTT TAAGAACCTGCGTGATTTTCGCTCTTAGTGTTGTCATCGTTTCGCGATGCGGAGTTGCAGTGATTAGCGAAGCTTGTGTT GTTGTTATGCTGATTGAGGCTTTGTTTGTTTTTGTTAATTTTTTCTGCGTGTGGAAATTGGTTTTGATGTTTGCTACTTT TGAATTTTTGAATTGTTCTGAACTTGAAGGATGCCTGTGGCAAGGAAGGGGAAGTTAAGTTGGAAGAAGAGGTGATTGTG GATGTTAAAGATGATGGATCCTCCCTTTTGCCGGAATCAATTGCGGAGGAGGAAGAGAAGTTGCTCAAAGCTCGGATTCA GGAAGATGAAGTGAAGTGTGAGGAGGCACCGGACCTCAATGAGACACAGTTTGACAAATTGGATGAGCTTTTAACGCAAA CCAAGCTGTACTCTGAGTTTCTTCTGGAGAAAATGGATGACATCACGCTTGTATGTTCATTTTTTGCCGCCATTTTGCTT ATATTGTGTCAACCTTTTGGCTGTGTCAACTTATATTGTTATTTTTTTTATTTCAAGAATGGGGGCGATAAAGAGAATGA CGCTGAGGCTGAGGAGGAGAGTAATCCAGCGGTGAAGAAGAAGGGTCGCGGAGGAAAACGAAAAGCAGCTTCACAATGCA ATACAGTGAGTACATTGTGCTTGTATGGATTTTTGTTGTTTTCATGTTGTCAGCAAGGTCACTGTATATTAGATTATATG TGTACATGAGTTGCAAAAATTATGAAATTGTACTTTAGCTTAGTGTTTGTTGAACTCTTGATGGGATGCATAAATTAAAC ACTGATATTGTTTTCTTTGTGTTCAATGCAATTTGATTAGACATTGTTTGACCATTGGTTTTAAACATGCATATTTTAGT TTTCTTATTAACTTCTATTTATTTGTTATGTGACCTTGTTTGAAAATTATATTACTTTAGAGGAAGGCCAAAAGGGCAGT TGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGCAGACTGAAGATATGAACTTGACTGCGGAAGAAAGAGTTGAGAAAG AGCAGAAGGAGCTTATCCCTTTTCTCACAGGTGGAAAATTGAAGTCTTACCAACTAAAGGGTGTAAAGTGGTTGATCTCC CTTTGGCAAAATGGTTTGAATGGAATTCTTGCGGATCAAATGGGTCTTGGGAAGACAATTCAGACAATTGGGTTTCTTGC ACATCTGAAAGGCAATGGTCTGGATGGGCCATATATGATAATTGCTCCTCTATCAACACTCTCAAATTGGGTGAATGAGA TTTCTAGGTAGACCAGATGTTTTGTTAAAGAATTTTGGCTATTTAAATATTATAGCATAATGGTATGCTTCTCCATTGTG ACCATTATTTTTATGAATAAATATAAATAGGTTTGCACCATCGCTCCCAGCTGTTATCTACCATGGTGACAAGAAACAGA GAGATGAAATCCGAAGGAAACATATGCCTAGAACAATTGGCCCAGAATTTCCCATAGTAATTACTTCTTATGAGGTTGCT TTAAATGATGCCAAGAAACATCTCAGAGCATACCATTGGAAATATCTTGTTGTTGATGAGGTAAACAAGTTCCGACATTT GAATGTCTGAAGAGTTTTACATTTAGCTGCATGAATAAGTTATCAGAACTTTAATAATGAAAAGTATGTATGCTTCTGTT ACAACCTTTTTTTTTTACCTCTGAAGGGACACAGGCTCAAAAATTCAAAATGCTTATTAGTGAAGGCGTTGAAATGCATG ACTGTAGAAAATAAGCTTCTTCTTACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCGTTGTTGAACTTCAT TTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTGTATCCTATGCTCATTTGTTGTGTTTGGTCATGC TTTTCTTCCTTTTCTACTGTTATCTGATGATTGTTGACTCTGAATTGAAACTTGAAATTCTAAATCTTTAAATTTGATAA TGTCTCATTTAATTGTGTGTGTATATTTTCTTATTTATATACATGAGTTAAATAATGCATTCACTGTACCAAATCAAACT TCTCAATGACAATGAGATGTTTCTTTGACTTTAATGTCCTTTTCATTTGAATCTGCTGTTTCCCACCCCACCCTCTTTTC CCATATCAATTCTACCTATGCAAGGTCTGTTTGTCTTCCTAACCCAAATGTTTCTTGCGGCTTTGATATGTACTCTTACC CATGCGCAGTAGTTATTTCTATGTTATTTGGCAATATTGGTTTGGTTTCCAATAGTGCTGAAGGAAACCTTATGTGTGCC TGTGTTTTACTTTCTTTTATACGACCCAATTTCTTTGTAGGTTTAATCTGTCAGGCAAGTGCAGTAATGGAGCAACCAAG GAAGAACTGGAAGAGAAAAGAAGAGCCCAAGTAGGCAATCCAAGATTGTTTCTATATGCTAGTTGTCCATTCTTTACATG CACTAGAAGGCTCAATGGCTTTATTGTATGCAGGTAGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTCTTGCGTAG GATGAAGGCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCAAGCATGACTGAAAATCAGAAAA GCTTGCAGGATCATTTAATTAACAAGACATTGGGGAAATATTTAGAAGACAAAATGTCAATTGGTTAGTTTGATTTCCAG CTTTTCCTTTGAAAAAGTGTTTTTGTACCTCCTGTACGTTGATTTCTTTTCTTTCTAAGAAAATATATTTAGTCAGATCT ATTTTATGCTGTTGATTTCTTTTCTTTCTAAGAAAATGTATTTATTCAGATCTATTTTATACTATTGATTCTTTTCTTTT CTAAGAAAATGTATTTATTCAGATCTATTTTATACTGTTTTACTGCAGGACGTGTTGGGGCAAAGCTTAATAATTTGGTC ATTCAACTTAGAAAGGTCTGCAACCATCCAGACCTCGTAGATTCAGCCTTTGATGGCTCACGTAAGTATCGCGTGATCGA ATGGTTTTGCTGCTTTTACATTTTTAATATTAGGATTATTAACCAAGCTATATTTTGCTTTCTTGATAGATTTTTATCCT CCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGACCGATTGTTGCAGCGGCTGTTTGCTCGCAATCA CAAAGTATGCTTTTCAGTGCTGTATTTATCTTCTAACTTCCTTTTATGTTGCCAAGCCGGTACTCATGTGCATTTGCCTT TGCTAACTACTATCAGGTTCTGATCTTCAGTCAGTGGACTAAGGTGTTAGATATAATGGACTATTATTTCAGTGAAAAGG GCTTTGAAGTTTGCAGGATTGATGGGAGTGTCAAACTAGAGGAAAGGAAACGACAGGTTTGTACCAATGCATGGATTATG TGACTTGATCTAATAATTTGAAATTACTTTTGTATCGTAATTTTGTTTTAGGTTTTGAATATTTAATAATGCATCGCTTT TTAGATGATATCTTGAAGCTGCAAATGCACCTCAATTATAAATAGCCAAGGAGATTTTTCTAGTTGTTTTGCTACACATG ATATCTTGAAGCTGTAAATGACATGTTGTTATTGTCTTCCTTTATGCATTAATTTTTCCATTAAAACTGAAACTTAGTGG TCATCACTTGGGGACTCTGGCCCTGCCAAAGTGCCAATCATACTTTCTGATTATGATGTATGATGACGAAAGGAAATAGT GTTATATTTATAGACAGGCTTGGTTCAGAAGTTGTATGTCCTTAAAACACGGATTTTTATTGCAATGCACTTATGGTATC ATCAGCTGTTATATTTGAGAATATTAATCTTAATTACTAATCATGGATTGAAGAAGCTGAATTAAGTATATTTCATTGGT ATATCTTCTGCCCATGAGCAGATCCAGGAGTTCAATGATGTAAACAGCAATTGCAGAATCTTTCTTCTTTCAACTAGGGC TGGTGGATTGGGAATTAATCTCACTGCGGCTGACACTTGCATTCTTTATGACAGCGATTGGGTACTTTTTTTGACTCTTT CGTCATTTGGCGTGTTATCTATTTGCTTTACACAGTGTTAGATTATAATCTGCTTATGATTTAATTGTCCTCCAGAATCC TCAAATGGATTTACAGGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTG CTCAATCTGTAGAGGTACGTGACAATATTGTATTTTAAGTTAAGCACAGTGTGACTGTTGGCTTACATTGAGATGGAAAT GACAATCTGTTTACAGGGTCGCATGTTAAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCATGTGGTTATTGAGAAAGGAC AGTTTCATCAAGAACGTTCAAAGCCTGTCAATGTGAATGAAATGGAGGTTTGTATGTCAGATGTCAGCAGTTGCTTGCCT AAGTTTTCTTATCTTTGTTGTTCTTCCATGTCAACCTGCTCAAGCATGCCAATGATATGGAAAATGTTGTTTTGATTGTC AGCTCAGTATAACTTGTTTGTATGGCTTTTTTTTTGGTCAAAACTTGTTTGTATGGCTTGAAAAAACTATAACTTGCCTA GAAACTGGCATAATAATTCTTGGGTGGCCCAATTAGATGAACATGCTGAGCTTTTAATTAATTTGTTAGTGTTATATATT CAAGCTTATACATATCAGACCTCATTTTAAGGAAACTTTATGGAGATTCTTTGCCTGGTCATTTTCAATTTGCTAGAGCT AGGCTATGTATTTCAATTTGTTTAGGTTGAATGGATTAAGCTAACTAATAAGACTTACTCGAAATATGAAGTGAAGAGGG GAATACAAAATCTGGGACTAGCATCATTTTCATTATTGGGATTTGGTTTTCTGGAGTGTTGCCTTTACCCTATTTTGATT TGGAGTTTGTGTGTGATTTGATAGGAGGATGATGTTTTGGCATTGCTTCGAAATGAAGAAACAGCGGAAGATAAAATGAT ACAAACCGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCAGTGATCTTGTTATCAATAGCTCAAATGATGATG AAAACTTCAAAGCACCAGGAATCTCATTTCCCTTGAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCGAGTGGGGGC ATGCTTTCTACCCTTAACAGTTGATTTCTGGTTTGTACAATAGAACTATTTGTGGCTACTAAAACTTCTTTTTTTATGAA AGGGCTATATATGAGATGCTCTCGTCCAATGATGTGATGGGGTGAGCATCCAATTTTTTGTAAATGCTTCTAATGGAACT AGATGTAGGAAGGAAGCTATTTTCTGGTCATGTTTTTTGCGAGTTGAAATCCATCACTTAACTTGTTTTGGACTTATTTT AATGAGTTGAATCAGCTAGGGTTAGGATCATCTGAACTTGTGTTCTTTTTCCAGTGAACAAACTATGGTTTTGTGTTCAG GAAATTTACCCGCTATATATCAGGTTTGTAGTGTAAACCAATATTTACGGAAATTTATTTCCTGAATGGTTAGAGT
CDS sequence (LotjaGi2g1v0390800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACGAAGGACAAAGTGAAAACCGAAGATCCTGCTGTTGAATCTCCCACTTCGGTCCTAGAAGATGAGGATGCCTG TGGCAAGGAAGGGGAAGTTAAGTTGGAAGAAGAGGTGATTGTGGATGTTAAAGATGATGGATCCTCCCTTTTGCCGGAAT CAATTGCGGAGGAGGAAGAGAAGTTGCTCAAAGCTCGGATTCAGGAAGATGAAGTGAAGTGTGAGGAGGCACCGGACCTC AATGAGACACAGTTTGACAAATTGGATGAGCTTTTAACGCAAACCAAGCTGTACTCTGAGTTTCTTCTGGAGAAAATGGA TGACATCACGCTTAATGGGGGCGATAAAGAGAATGACGCTGAGGCTGAGGAGGAGAGTAATCCAGCGGTGAAGAAGAAGG GTCGCGGAGGAAAACGAAAAGCAGCTTCACAATGCAATACAGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAA GAAAGTGAGCAGACTGAAGATATGAACTTGACTGCGGAAGAAAGAGTTGAGAAAGAGCAGAAGGAGCTTATCCCTTTTCT CACAGGTGGAAAATTGAAGTCTTACCAACTAAAGGGTGTAAAGTGGTTGATCTCCCTTTGGCAAAATGGTTTGAATGGAA TTCTTGCGGATCAAATGGGTCTTGGGAAGACAATTCAGACAATTGGGTTTCTTGCACATCTGAAAGGCAATGGTCTGGAT GGGCCATATATGATAATTGCTCCTCTATCAACACTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCGCTCCC AGCTGTTATCTACCATGGTGACAAGAAACAGAGAGATGAAATCCGAAGGAAACATATGCCTAGAACAATTGGCCCAGAAT TTCCCATAGTAATTACTTCTTATGAGGTTGCTTTAAATGATGCCAAGAAACATCTCAGAGCATACCATTGGAAATATCTT GTTGTTGATGAGGGACACAGGCTCAAAAATTCAAAATGCTTATTAGTGAAGGCGTTGAAATGCATGACTGTAGAAAATAA GCTTCTTCTTACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCGTTGTTGAACTTCATTTTACCTGATATCT TCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGCAAGTGCAGTAATGGAGCAACCAAGGAAGAACTGGAA GAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTCTTGCGTAGGATGAAGGCTGATGT TGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCAAGCATGACTGAAAATCAGAAAAGCTTGCAGGATCATT TAATTAACAAGACATTGGGGAAATATTTAGAAGACAAAATGTCAATTGGACGTGTTGGGGCAAAGCTTAATAATTTGGTC ATTCAACTTAGAAAGGTCTGCAACCATCCAGACCTCGTAGATTCAGCCTTTGATGGCTCACATTTTTATCCTCCTGTAAA TGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGACCGATTGTTGCAGCGGCTGTTTGCTCGCAATCACAAAGTTC TGATCTTCAGTCAGTGGACTAAGGTGTTAGATATAATGGACTATTATTTCAGTGAAAAGGGCTTTGAAGTTTGCAGGATT GATGGGAGTGTCAAACTAGAGGAAAGGAAACGACAGATCCAGGAGTTCAATGATGTAAACAGCAATTGCAGAATCTTTCT TCTTTCAACTAGGGCTGGTGGATTGGGAATTAATCTCACTGCGGCTGACACTTGCATTCTTTATGACAGCGATTGGAATC CTCAAATGGATTTACAGGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACT GCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCATGTGGTTATTGAGAAAGGACA GTTTCATCAAGAACGTTCAAAGCCTGTCAATGTGAATGAAATGGAGGAGGATGATGTTTTGGCATTGCTTCGAAATGAAG AAACAGCGGAAGATAAAATGATACAAACCGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCAGTGATCTTGTT ATCAATAGCTCAAATGATGATGAAAACTTCAAAGCACCAGGAATCTCATTTCCCTTGAAAGGGCCTGGGTGGGAGGTGGT GATTCCAACTGCGAGTGGGGGCATGCTTTCTACCCTTAACAGTTGA
Protein sequence (LotjaGi2g1v0390800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTKDKVKTEDPAVESPTSVLEDEDACGKEGEVKLEEEVIVDVKDDGSSLLPESIAEEEEKLLKARIQEDEVKCEEAPDL NETQFDKLDELLTQTKLYSEFLLEKMDDITLNGGDKENDAEAEEESNPAVKKKGRGGKRKAASQCNTAKRAVAAMLTRSK ESEQTEDMNLTAEERVEKEQKELIPFLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLD GPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKHMPRTIGPEFPIVITSYEVALNDAKKHLRAYHWKYL VVDEGHRLKNSKCLLVKALKCMTVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELE EKRRAQVVAKLHAILRPFLLRRMKADVELMLPRKKEIIIYASMTENQKSLQDHLINKTLGKYLEDKMSIGRVGAKLNNLV IQLRKVCNHPDLVDSAFDGSHFYPPVNEIVEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRI DGSVKLEERKRQIQEFNDVNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLAT AQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERSKPVNVNEMEEDDVLALLRNEETAEDKMIQTDISDEDLEKLLDRSDLV INSSNDDENFKAPGISFPLKGPGWEVVIPTASGGMLSTLNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 13 | 761 | 749 | 0.0 | – | |
| PANTHER | 13 | 761 | 749 | 0.0 | – | |
| Coils | 55 | 75 | 21 | - | – | |
| MobiDBLite | 113 | 143 | 31 | - | – | |
| MobiDBLite | 113 | 132 | 20 | - | – | |
| Pfam | 149 | 493 | 345 | 7.6E-65 | ||
| Coils | 162 | 182 | 21 | - | – | |
| SUPERFAMILY | 162 | 422 | 261 | 2.26E-62 | ||
| SMART | 188 | 383 | 196 | 8.2E-38 | ||
| CDD | 189 | 424 | 236 | 1.61243E-140 | – | |
| Gene3D | 193 | 423 | 231 | 9.4E-72 | ||
| ProSiteProfiles | 204 | 372 | 169 | 23.87 | ||
| SUPERFAMILY | 424 | 714 | 291 | 1.89E-69 | ||
| Gene3D | 428 | 730 | 303 | 1.1E-99 | – | |
| CDD | 504 | 638 | 135 | 3.25459E-64 | – | |
| ProSiteProfiles | 518 | 682 | 165 | 17.898 | ||
| Pfam | 518 | 628 | 111 | 2.4E-20 | ||
| SMART | 544 | 628 | 85 | 3.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0390800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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