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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0390800 |
| Transcript ID | LotjaGi2g1v0390800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT5G66750.1 chromatin remodeling 1; Swiss-Prot: sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1; TrEMBL-Plants: tr|A0A0B2RWD8|A0A0B2RWD8_GLYSO ATP-dependent DNA helicase DDM1; Found in the gene: LotjaGi2g1v0390800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88691841..88697011) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCAGTGATTAGCGAAGCTTGTGTTGTTGTTATGCTGATTGAGGCTTTGTTTGTTTTTGTTAATTTTTTCTGCGTGTG GAAATTGGTTTTGATGTTTGCTACTTTTGAATTTTTGAATTGTTCTGAACTTGAAGGATGCCTGTGGCAAGGAAGGGGAA GTTAAGTTGGAAGAAGAGGTGATTGTGGATGTTAAAGATGATGGATCCTCCCTTTTGCCGGAATCAATTGCGGAGGAGGA AGAGAAGTTGCTCAAAGCTCGGATTCAGGAAGATGAAGTGAAGTGTGAGGAGGCACCGGACCTCAATGAGACACAGTTTG ACAAATTGGATGAGCTTTTAACGCAAACCAAGCTGTACTCTGAGTTTCTTCTGGAGAAAATGGATGACATCACGCTTGTA TGTTCATTTTTTGCCGCCATTTTGCTTATATTGTGTCAACCTTTTGGCTGTGTCAACTTATATTGTTATTTTTTTTATTT CAAGAATGGGGGCGATAAAGAGAATGACGCTGAGGCTGAGGAGGAGAGTAATCCAGCGGTGAAGAAGAAGGGTCGCGGAG GAAAACGAAAAGCAGCTTCACAATGCAATACAGTGAGTACATTGTGCTTGTATGGATTTTTGTTGTTTTCATGTTGTCAG CAAGGTCACTGTATATTAGATTATATGTGTACATGAGTTGCAAAAATTATGAAATTGTACTTTAGCTTAGTGTTTGTTGA ACTCTTGATGGGATGCATAAATTAAACACTGATATTGTTTTCTTTGTGTTCAATGCAATTTGATTAGACATTGTTTGACC ATTGGTTTTAAACATGCATATTTTAGTTTTCTTATTAACTTCTATTTATTTGTTATGTGACCTTGTTTGAAAATTATATT ACTTTAGAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGCAGACTGAAGATATGAACT TGACTGCGGAAGAAAGAGTTGAGAAAGAGCAGAAGGAGCTTATCCCTTTTCTCACAGGTGGAAAATTGAAGTCTTACCAA CTAAAGGGTGTAAAGTGGTTGATCTCCCTTTGGCAAAATGGTTTGAATGGAATTCTTGCGGATCAAATGGGTCTTGGGAA GACAATTCAGACAATTGGGTTTCTTGCACATCTGAAAGGCAATGGTCTGGATGGGCCATATATGATAATTGCTCCTCTAT CAACACTCTCAAATTGGGTGAATGAGATTTCTAGGTAGACCAGATGTTTTGTTAAAGAATTTTGGCTATTTAAATATTAT AGCATAATGGTATGCTTCTCCATTGTGACCATTATTTTTATGAATAAATATAAATAGGTTTGCACCATCGCTCCCAGCTG TTATCTACCATGGTGACAAGAAACAGAGAGATGAAATCCGAAGGAAACATATGCCTAGAACAATTGGCCCAGAATTTCCC ATAGTAATTACTTCTTATGAGGTTGCTTTAAATGATGCCAAGAAACATCTCAGAGCATACCATTGGAAATATCTTGTTGT TGATGAGGTAAACAAGTTCCGACATTTGAATGTCTGAAGAGTTTTACATTTAGCTGCATGAATAAGTTATCAGAACTTTA ATAATGAAAAGTATGTATGCTTCTGTTACAACCTTTTTTTTTTACCTCTGAAGGGACACAGGCTCAAAAATTCAAAATGC TTATTAGTGAAGGCGTTGAAATGCATGACTGTAGAAAATAAGCTTCTTCTTACTGGGACACCTCTTCAGAATAACTTGGC AGAGCTATGGTCGTTGTTGAACTTCATTTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTGTATCCT ATGCTCATTTGTTGTGTTTGGTCATGCTTTTCTTCCTTTTCTACTGTTATCTGATGATTGTTGACTCTGAATTGAAACTT GAAATTCTAAATCTTTAAATTTGATAATGTCTCATTTAATTGTGTGTGTATATTTTCTTATTTATATACATGAGTTAAAT AATGCATTCACTGTACCAAATCAAACTTCTCAATGACAATGAGATGTTTCTTTGACTTTAATGTCCTTTTCATTTGAATC TGCTGTTTCCCACCCCACCCTCTTTTCCCATATCAATTCTACCTATGCAAGGTCTGTTTGTCTTCCTAACCCAAATGTTT CTTGCGGCTTTGATATGTACTCTTACCCATGCGCAGTAGTTATTTCTATGTTATTTGGCAATATTGGTTTGGTTTCCAAT AGTGCTGAAGGAAACCTTATGTGTGCCTGTGTTTTACTTTCTTTTATACGACCCAATTTCTTTGTAGGTTTAATCTGTCA GGCAAGTGCAGTAATGGAGCAACCAAGGAAGAACTGGAAGAGAAAAGAAGAGCCCAAGTAGGCAATCCAAGATTGTTTCT ATATGCTAGTTGTCCATTCTTTACATGCACTAGAAGGCTCAATGGCTTTATTGTATGCAGGTAGTAGCAAAGCTTCATGC AATTCTTCGGCCCTTTCTCTTGCGTAGGATGAAGGCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCT ATGCAAGCATGACTGAAAATCAGAAAAGCTTGCAGGATCATTTAATTAACAAGACATTGGGGAAATATTTAGAAGACAAA ATGTCAATTGGTTAGTTTGATTTCCAGCTTTTCCTTTGAAAAAGTGTTTTTGTACCTCCTGTACGTTGATTTCTTTTCTT TCTAAGAAAATATATTTAGTCAGATCTATTTTATGCTGTTGATTTCTTTTCTTTCTAAGAAAATGTATTTATTCAGATCT ATTTTATACTATTGATTCTTTTCTTTTCTAAGAAAATGTATTTATTCAGATCTATTTTATACTGTTTTACTGCAGGACGT GTTGGGGCAAAGCTTAATAATTTGGTCATTCAACTTAGAAAGGTCTGCAACCATCCAGACCTCGTAGATTCAGCCTTTGA TGGCTCACGTAAGTATCGCGTGATCGAATGGTTTTGCTGCTTTTACATTTTTAATATTAGGATTATTAACCAAGCTATAT TTTGCTTTCTTGATAGATTTTTATCCTCCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGACCGATT GTTGCAGCGGCTGTTTGCTCGCAATCACAAAGTATGCTTTTCAGTGCTGTATTTATCTTCTAACTTCCTTTTATGTTGCC AAGCCGGTACTCATGTGCATTTGCCTTTGCTAACTACTATCAGGTTCTGATCTTCAGTCAGTGGACTAAGGTGTTAGATA TAATGGACTATTATTTCAGTGAAAAGGGCTTTGAAGTTTGCAGGATTGATGGGAGTGTCAAACTAGAGGAAAGGAAACGA CAGGTTTGTACCAATGCATGGATTATGTGACTTGATCTAATAATTTGAAATTACTTTTGTATCGTAATTTTGTTTTAGGT TTTGAATATTTAATAATGCATCGCTTTTTAGATGATATCTTGAAGCTGCAAATGCACCTCAATTATAAATAGCCAAGGAG ATTTTTCTAGTTGTTTTGCTACACATGATATCTTGAAGCTGTAAATGACATGTTGTTATTGTCTTCCTTTATGCATTAAT TTTTCCATTAAAACTGAAACTTAGTGGTCATCACTTGGGGACTCTGGCCCTGCCAAAGTGCCAATCATACTTTCTGATTA TGATGTATGATGACGAAAGGAAATAGTGTTATATTTATAGACAGGCTTGGTTCAGAAGTTGTATGTCCTTAAAACACGGA TTTTTATTGCAATGCACTTATGGTATCATCAGCTGTTATATTTGAGAATATTAATCTTAATTACTAATCATGGATTGAAG AAGCTGAATTAAGTATATTTCATTGGTATATCTTCTGCCCATGAGCAGATCCAGGAGTTCAATGATGTAAACAGCAATTG CAGAATCTTTCTTCTTTCAACTAGGGCTGGTGGATTGGGAATTAATCTCACTGCGGCTGACACTTGCATTCTTTATGACA GCGATTGGGTACTTTTTTTGACTCTTTCGTCATTTGGCGTGTTATCTATTTGCTTTACACAGTGTTAGATTATAATCTGC TTATGATTTAATTGTCCTCCAGAATCCTCAAATGGATTTACAGGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGC CTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGTACGTGACAATATTGTATTTTAAGTTAAGCACAGTGTG ACTGTTGGCTTACATTGAGATGGAAATGACAATCTGTTTACAGGGTCGCATGTTAAAAAGAGCTTTTAGCAAGTTGAAGC TTGAGCATGTGGTTATTGAGAAAGGACAGTTTCATCAAGAACGTTCAAAGCCTGTCAATGTGAATGAAATGGAGGTTTGT ATGTCAGATGTCAGCAGTTGCTTGCCTAAGTTTTCTTATCTTTGTTGTTCTTCCATGTCAACCTGCTCAAGCATGCCAAT GATATGGAAAATGTTGTTTTGATTGTCAGCTCAGTATAACTTGTTTGTATGGCTTTTTTTTTGGTCAAAACTTGTTTGTA TGGCTTGAAAAAACTATAACTTGCCTAGAAACTGGCATAATAATTCTTGGGTGGCCCAATTAGATGAACATGCTGAGCTT TTAATTAATTTGTTAGTGTTATATATTCAAGCTTATACATATCAGACCTCATTTTAAGGAAACTTTATGGAGATTCTTTG CCTGGTCATTTTCAATTTGCTAGAGCTAGGCTATGTATTTCAATTTGTTTAGGTTGAATGGATTAAGCTAACTAATAAGA CTTACTCGAAATATGAAGTGAAGAGGGGAATACAAAATCTGGGACTAGCATCATTTTCATTATTGGGATTTGGTTTTCTG GAGTGTTGCCTTTACCCTATTTTGATTTGGAGTTTGTGTGTGATTTGATAGGAGGATGATGTTTTGGCATTGCTTCGAAA TGAAGAAACAGCGGAAGATAAAATGATACAAACCGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCAGTGATC TTGTTATCAATAGCTCAAATGATGATGAAAACTTCAAAGCACCAGGAATCTCATTTCCCTTGAAAGGGCCTGGGTGGGAG GTGGTGATTCCAACTGCGAGTGGGGGCATGCTTTCTACCCTTAACAGTTGA
CDS sequence (LotjaGi2g1v0390800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACATCACGCTTAATGGGGGCGATAAAGAGAATGACGCTGAGGCTGAGGAGGAGAGTAATCCAGCGGTGAAGAA GAAGGGTCGCGGAGGAAAACGAAAAGCAGCTTCACAATGCAATACAAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTTA CAAGATCTAAAGAAAGTGAGCAGACTGAAGATATGAACTTGACTGCGGAAGAAAGAGTTGAGAAAGAGCAGAAGGAGCTT ATCCCTTTTCTCACAGGTGGAAAATTGAAGTCTTACCAACTAAAGGGTGTAAAGTGGTTGATCTCCCTTTGGCAAAATGG TTTGAATGGAATTCTTGCGGATCAAATGGGTCTTGGGAAGACAATTCAGACAATTGGGTTTCTTGCACATCTGAAAGGCA ATGGTCTGGATGGGCCATATATGATAATTGCTCCTCTATCAACACTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCA CCATCGCTCCCAGCTGTTATCTACCATGGTGACAAGAAACAGAGAGATGAAATCCGAAGGAAACATATGCCTAGAACAAT TGGCCCAGAATTTCCCATAGTAATTACTTCTTATGAGGTTGCTTTAAATGATGCCAAGAAACATCTCAGAGCATACCATT GGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAATTCAAAATGCTTATTAGTGAAGGCGTTGAAATGCATGACT GTAGAAAATAAGCTTCTTCTTACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCGTTGTTGAACTTCATTTT ACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGCAAGTGCAGTAATGGAGCAACCAAGG AAGAACTGGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTCTTGCGTAGGATG AAGGCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCAAGCATGACTGAAAATCAGAAAAGCTT GCAGGATCATTTAATTAACAAGACATTGGGGAAATATTTAGAAGACAAAATGTCAATTGGACGTGTTGGGGCAAAGCTTA ATAATTTGGTCATTCAACTTAGAAAGGTCTGCAACCATCCAGACCTCGTAGATTCAGCCTTTGATGGCTCACATTTTTAT CCTCCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGACCGATTGTTGCAGCGGCTGTTTGCTCGCAA TCACAAAGTTCTGATCTTCAGTCAGTGGACTAAGGTGTTAGATATAATGGACTATTATTTCAGTGAAAAGGGCTTTGAAG TTTGCAGGATTGATGGGAGTGTCAAACTAGAGGAAAGGAAACGACAGATCCAGGAGTTCAATGATGTAAACAGCAATTGC AGAATCTTTCTTCTTTCAACTAGGGCTGGTGGATTGGGAATTAATCTCACTGCGGCTGACACTTGCATTCTTTATGACAG CGATTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACA GGCTTGCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCATGTGGTTATT GAGAAAGGACAGTTTCATCAAGAACGTTCAAAGCCTGTCAATGTGAATGAAATGGAGGAGGATGATGTTTTGGCATTGCT TCGAAATGAAGAAACAGCGGAAGATAAAATGATACAAACCGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCA GTGATCTTGTTATCAATAGCTCAAATGATGATGAAAACTTCAAAGCACCAGGAATCTCATTTCCCTTGAAAGGGCCTGGG TGGGAGGTGGTGATTCCAACTGCGAGTGGGGGCATGCTTTCTACCCTTAACAGTTGA
Protein sequence (LotjaGi2g1v0390800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDITLNGGDKENDAEAEEESNPAVKKKGRGGKRKAASQCNTRKAKRAVAAMLTRSKESEQTEDMNLTAEERVEKEQKEL IPFLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLDGPYMIIAPLSTLSNWVNEISRFA PSLPAVIYHGDKKQRDEIRRKHMPRTIGPEFPIVITSYEVALNDAKKHLRAYHWKYLVVDEGHRLKNSKCLLVKALKCMT VENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEKRRAQVVAKLHAILRPFLLRRM KADVELMLPRKKEIIIYASMTENQKSLQDHLINKTLGKYLEDKMSIGRVGAKLNNLVIQLRKVCNHPDLVDSAFDGSHFY PPVNEIVEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLEERKRQIQEFNDVNSNC RIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVI EKGQFHQERSKPVNVNEMEEDDVLALLRNEETAEDKMIQTDISDEDLEKLLDRSDLVINSSNDDENFKAPGISFPLKGPG WEVVIPTASGGMLSTLNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 65 | 65 | - | – | |
| PANTHER | 15 | 658 | 644 | 0.0 | – | |
| PANTHER | 15 | 658 | 644 | 0.0 | – | |
| Pfam | 46 | 390 | 345 | 5.3E-65 | ||
| MobiDBLite | 51 | 65 | 15 | - | – | |
| Coils | 59 | 79 | 21 | - | – | |
| SUPERFAMILY | 59 | 319 | 261 | 1.69E-62 | ||
| SMART | 85 | 280 | 196 | 8.2E-38 | ||
| CDD | 86 | 321 | 236 | 4.29629E-141 | – | |
| Gene3D | 90 | 320 | 231 | 7.0E-72 | ||
| ProSiteProfiles | 101 | 269 | 169 | 23.87 | ||
| SUPERFAMILY | 321 | 611 | 291 | 1.26E-69 | ||
| Gene3D | 325 | 627 | 303 | 7.7E-100 | – | |
| CDD | 401 | 535 | 135 | 1.54825E-64 | – | |
| ProSiteProfiles | 415 | 579 | 165 | 17.898 | ||
| Pfam | 415 | 525 | 111 | 1.9E-20 | ||
| SMART | 441 | 525 | 85 | 3.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0390800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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