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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0391100 |
| Transcript ID | LotjaGi2g1v0391100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT4G36650.1 plant-specific TFIIB-related protein; Swiss-Prot: sp|O23215|PBRP1_ARATH Plant-specific TFIIB-related protein 1; TrEMBL-Plants: tr|I1J8V2|I1J8V2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0391100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88719448..88723588) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAACCCAACTCCCGATAGAGAGATATATAAGCGAGCCAACAGCCGTTTACTGACACAGCAAATGGAAAAGGGGAAAA TGAAGTGTCCGTACTGCTCGGCGGCGGCTGGCCGTTGCGCCACCACGAGCTCCGGCAGGTCAATAACGGAGTGCACGTCT TGCGGCCGGGTCATGGAAGAGCGACAATCGCATCCCCACCACGTCTTCCACCTCCGCGCCCAAGACAACCCTCTGTGCCT CGCCACCTCCGATCTCCCTCTCCCGACTCTCCACCACCAAAACGACGCCGGCGACGAGGAGGACCCTTTCGAACCCACGG GCTTCCTCACCGCGTTCTCCACCTGGTCCCTGGAACCCAGCCCGCTTTACCTTCAGTCCTCCATCGCGTTCTCCGGCCAC CTCGCTGAACTCGAGCGCACTCTCGAATCGTCTTCTTCTTCTTCAGCTACAGTCGTGGTTGATAACTTGAGGGCGTACAT GCAGATTATCGATGTTGCCTCCATTCTGGGCTTGGATTGCGATATCTCCGATCACGCTTTTCAATTGTTCAGGGATTGTT GCTCCGCCACTTGCTTGAGAAACCGCAGTGTGGAGGCTCTTGCCACCGCCGCTCTTGTTCATGCCATTCGAGAGGCTCAA GAGCCCAGAACCCTCCAGGTTCGTCTCTCTTTCCGACTTTCATTTGCAATTTTTGGTTGTGTTTCTGGTATAATTATTCA GTAATCAATGGGGAATTTTGAAGAATCATGGTTATTTGTTGTCAATTTAGTACTATTAGCAAAAGATTCACTGTGTTTTT TCAGTGGGAACATGCTACTGTTTTGCCTGATTGTATAGATGACCAGCTGAAACTTCATCACTTTGTAATATGACAGGAAA TTTCAATTGCGGCCAATGTGCCGCAGAAGGAAATAGGGAAATACATCAAGATACTTGGAGAAGCTTTGCAGCTAAGTCAA CCTATTAACAGCAACTCCATTTCAGTTCATATGCCAAGATTTTGCACACTTCTCCAGCTCAATAAATCTGCTCAGGTAAC TGGACTGTAATTTCTTTAACATTTGACAGCTTCGACTTTATTGCGTTTTCGAAAATTTAAATGGTTGTTGTATGTCTGTG AAAAAATTCCTTTGCATAAATGTTCTATGGTTCTCCCAAGTCGTACATACGACTTTCATCGAATATGGCTTTCCGCAGAA TTCTATATGTATCTATGAGATTGAGTATGGAATTATTTTCAAATTATTTCTTCAATTAATAGAAAAAGGGAATAGTAAAT ATATATAATATATCTACTAGGGATTATCTTAAATTTGGTTAGGGCCTTAGGGGTGTCTAAGAAAGCATTCTTTCACATCA CATATGTGTACCTTCGAATCCTCTTTCCACGACTTTGTCGGCACCTTCTCTCCATCAATAATATCAACCATTCGATATAT CCGCTCCAAAAAACTATAACCCTAGAAAACATTGGAACCACGATAGATTGCGAACCCAGCCACCTCTTGTGACATTGTCC TCTTAACGGGTCCAAGCCCAACGACCAGCTCACCCTCACCTCACGGTGGTTCACCATTTCCTTTAATTTGCACCAGCAAA TTAAAATGGTAGTGGTCAGGTGGCTGAGAAGGAAGCGAAGAACTGGGTGACGCAAGGAGTGAGAAGTGAATGAAAATGAA CAAGTTAGGCAAAGCCATGGTTTAATTGGTTTATGAGCTTAGAATTTTTACATATGTATCTAATGGTCATGAAACAGGGT TCTAAATTGTGGACTGCATCACGTGATGCGGCCGCAATATTATCGGATCGCAATTGCGGCGTGATTTCGATTCACCTAAA TAGCCGCAACGGAACCACAATTCAGCCGCAACAGTTTGCATTATTTAAGAAAATCACTCCGCAATGGCATCTCAATGCCC GCAATCGCTGTAGCCGCATCCGCCATCGCAACCGCAATTTAGAACCCTGGTGATTATTGATGATGGAGGGGGGCTGCAAA CAAAGCTGAAGGAGAGGGTTCCTGATATCATCATATCCTGCTCAATACATCTACAAAGTTCTTAATTTTATGCTGCTGTC CATTTTTGTTTTTTTGTAAACCAAGAGACAGCAACAGATTGTAGGCCTTTATGGATACTTGTTGAACAGGTTCTAGGTCT TTATGTCCTTGTGACAAAATAAAGTTGGTATTATGGGCTACGTTGAATACTTATTACATGGTAGACATTAGTTACACTTT TAGATGTCTAAGGATCAAGTTGTGATAGTGAATTTGTTAAAATTGCATTCTTTTATTTTTTTACTTATAATACAAAATTC TGAGAATGACATGCATTGTATTTCAGGAACTGGCTACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACTCGT AGGAATCCAATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAACTTGAAGATAAACGCAAAACACAAGCTGAAAT TTGCAAGGTAACTGGACTTACTGAAGTCACCCTCCGTAAAGTGTACAAGGAACTATTGGAGAATTGGGATGATTTACTTC CCTCTAATTACACCCCAGCTGTTCCTCCTGAGAGGGCATTCCCCACGACCGTAATTGCCTCTGCTCGTTCTTCAACAAAG GTTGATGCTATAGAGGTTACTTCTTTAGACTCCGAAAAGTTGCCAGAAATTAAACCTAGTAAACCTAATGAGGTCTTAGT GCCTTCCAGTGGAATACATAATAATCAGAATGTTACACAAGGAATGGATATTGATGTATTCCAGCGTAACCACCACCAAC CTGAACCTTTAGGAGATGACACAAATGGTGGGGCTAGTGTCAGTTATCCAAAATCAAGCCAACTTAGCAGTCCTCCACCA TCAAGTGCAAGCTCTGTTGTGAGGGCGTTTTCAGCACCACCTTCATCGAGGCCTCCAAATGTTCGATTAGTGCAGTCACT TAAGACAATGTCAGGTTATCCCGAGCACTGAAATTACTTCTTGTGCTAACACCTAATATGATTTTGTTTCGTGTATCACT GTATTTATATGTACTGTATAATTTGTTTGTTTCTGAGGTGTGAGGCAGCTATGTTGTGATTGTTGCGTATAGTTGAAATA TGGAAATGATTTATTTGGGTCTTTTATTGTACCCTTTTTATTTTGAATTCAAGTTTGAAATGGTGTGACTGTAAAATTTT GACTGAATTTTGATTAAACGAATTTCTCATTTATTTTTAAAGGATTTTTTACTGCCGTTTTGAAAAGTGGGCTACTGATG AAATTACAATTAAGTGTTTATCGATTTGTCCGCTCTAAATTATGGTGGTTCAGCCAGGTGTATAGGAACGCTTGACCTAG CCTTTGGTCCCAAAACCCATGGTGAGTGAAGATACTTCACCTTGTTGGGTCAAGCTTCCTTATAAAAGCTCGCTTGTTCC TTGTGTTCTTTGGGGTTTTTTAGTGTTTTATTGTGAACTGTCATTAAAGGCACCATGATTTGCCAATTAATTTGGACCTT TGGGGGCAGCATTAAGTTAGATTGGGGTTATGGCCGCTCCTCCCCCTTTATTGGGAAGTTATGAGTCGTAATGTGACCCT TGTTTAGGGATGTCAAAAATATCCGTACGGCCGTACCCGCTGGTAAATATTCGCCACGCAGGGCGGGCGGGTACTGGTTA TGTTAAGCTAAATTGGTAATCATTCAACTTTAAAATCGAAGCTGGATTCATTACTGAAAGATAACAAAGAAAAAATGTAA TAACTTGATTGAAGCACTTCTCCTTCTCCTGTTTTTTAAGTATCGTTTTCTCTGTAATTGCTTCCTTCTTGTTGCTCTAA TTTCGCCTTCTTATGGTCTTTGATTTTGCTCCTGCCTTCTGGCCTTTGATTTTGCTCCTGCCCTCTGGTCTTTGCTTTTC TGATAATTGTTATTTTCCATTTTTCCCCTGTTTTTGGATCTCTCCCTCCTCTTAGTAATTTTCTTACTCTGTTTTCTTAT ATCAAGAATTCTTTGTTCTCCCCTTTGATTCTCACTAGTTCTCCCTCTTGTAATTTTCTTGCTCTGTTTTCTCATAAAGA AAACTCTGTCCACCCTCCCCCAATTCTCACCGAGCTTCTCATCAAAATTCCCTTTTTATAA
CDS sequence (LotjaGi2g1v0391100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGGGGAAAATGAAGTGTCCGTACTGCTCGGCGGCGGCTGGCCGTTGCGCCACCACGAGCTCCGGCAGGTCAAT AACGGAGTGCACGTCTTGCGGCCGGGTCATGGAAGAGCGACAATCGCATCCCCACCACGTCTTCCACCTCCGCGCCCAAG ACAACCCTCTGTGCCTCGCCACCTCCGATCTCCCTCTCCCGACTCTCCACCACCAAAACGACGCCGGCGACGAGGAGGAC CCTTTCGAACCCACGGGCTTCCTCACCGCGTTCTCCACCTGGTCCCTGGAACCCAGCCCGCTTTACCTTCAGTCCTCCAT CGCGTTCTCCGGCCACCTCGCTGAACTCGAGCGCACTCTCGAATCGTCTTCTTCTTCTTCAGCTACAGTCGTGGTTGATA ACTTGAGGGCGTACATGCAGATTATCGATGTTGCCTCCATTCTGGGCTTGGATTGCGATATCTCCGATCACGCTTTTCAA TTGTTCAGGGATTGTTGCTCCGCCACTTGCTTGAGAAACCGCAGTGTGGAGGCTCTTGCCACCGCCGCTCTTGTTCATGC CATTCGAGAGGCTCAAGAGCCCAGAACCCTCCAGGAAATTTCAATTGCGGCCAATGTGCCGCAGAAGGAAATAGGGAAAT ACATCAAGATACTTGGAGAAGCTTTGCAGCTAAGTCAACCTATTAACAGCAACTCCATTTCAGTTCATATGCCAAGATTT TGCACACTTCTCCAGCTCAATAAATCTGCTCAGGAACTGGCTACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTG CACTCGTAGGAATCCAATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAACTTGAAGATAAACGCAAAACACAAG CTGAAATTTGCAAGGTAACTGGACTTACTGAAGTCACCCTCCGTAAAGTGTACAAGGAACTATTGGAGAATTGGGATGAT TTACTTCCCTCTAATTACACCCCAGCTGTTCCTCCTGAGAGGGCATTCCCCACGACCGTAATTGCCTCTGCTCGTTCTTC AACAAAGGTTGATGCTATAGAGGTTACTTCTTTAGACTCCGAAAAGTTGCCAGAAATTAAACCTAGTAAACCTAATGAGG TCTTAGTGCCTTCCAGTGGAATACATAATAATCAGAATGTTACACAAGGAATGGATATTGATGTATTCCAGCGTAACCAC CACCAACCTGAACCTTTAGGAGATGACACAAATGGTGGGGCTAGTGTCAGTTATCCAAAATCAAGCCAACTTAGCAGTCC TCCACCATCAAGTGCAAGCTCTGTTGTGAGGGCGTTTTCAGCACCACCTTCATCGAGGCCTCCAAATGTTCGATTAGTGC AGTCACTTAAGACAATGTCAGGTTATCCCGAGCACTGA
Protein sequence (LotjaGi2g1v0391100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKGKMKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEED PFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLESSSSSSATVVVDNLRAYMQIIDVASILGLDCDISDHAFQ LFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRF CTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD LLPSNYTPAVPPERAFPTTVIASARSSTKVDAIEVTSLDSEKLPEIKPSKPNEVLVPSSGIHNNQNVTQGMDIDVFQRNH HQPEPLGDDTNGGASVSYPKSSQLSSPPPSSASSVVRAFSAPPSSRPPNVRLVQSLKTMSGYPEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 393 | 388 | 6.8E-235 | – | |
| PANTHER | 6 | 393 | 388 | 6.8E-235 | ||
| PRINTS | 23 | 43 | 21 | 3.3E-25 | ||
| Gene3D | 135 | 227 | 93 | 5.6E-18 | – | |
| SUPERFAMILY | 136 | 226 | 91 | 2.04E-15 | ||
| CDD | 137 | 218 | 82 | 1.36721E-6 | ||
| SMART | 139 | 220 | 82 | 2.9E-4 | ||
| Pfam | 143 | 211 | 69 | 3.6E-7 | ||
| PRINTS | 181 | 200 | 20 | 3.3E-25 | ||
| PRINTS | 207 | 222 | 16 | 3.3E-25 | ||
| SUPERFAMILY | 233 | 331 | 99 | 1.02E-28 | ||
| Gene3D | 234 | 332 | 99 | 2.0E-24 | – | |
| SMART | 235 | 316 | 82 | 1.7E-15 | ||
| PRINTS | 236 | 254 | 19 | 3.3E-25 | ||
| CDD | 237 | 315 | 79 | 2.4798E-15 | ||
| Pfam | 237 | 307 | 71 | 3.3E-12 | ||
| PRINTS | 270 | 286 | 17 | 3.3E-25 | ||
| PRINTS | 302 | 316 | 15 | 3.3E-25 | ||
| MobiDBLite | 363 | 386 | 24 | - | – | |
| MobiDBLite | 399 | 465 | 67 | - | – | |
| MobiDBLite | 414 | 440 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | TBP-class protein binding | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi2g1v0391100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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