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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396400 |
| Transcript ID | LotjaGi2g1v0396400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G22410.1 SLOW GROWTH 1; Swiss-Prot: sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; TrEMBL-Plants: tr|I1J914|I1J914_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0396400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89397077..89399361) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAAATAATTACCACTTTAAAGTGGGGTGTTAAATTGGTTGCTTGGGGTGCCAAATTTAACACCATGAATCATTTTCA ATACAAAATTTAAATACTAGGATTGGTACAATAAGCCTGGGTTAGTTTTGATGTCCTCTGTTCTAAAACTGAAACGGGCA AGCGTTGTCTCCCGCTTCTTTTGCGTAGTCTCTTTACACACACAAACACAAATCACAGAAATCACCAAAACCAAGTTAAA CTCACCCACACACCAAACTCTTCACTGTCTCCTTGATCAATGTTCCTCATTGAGACAACTCAAGCTTCTCCATGCCCAAA TCATCCTCCATGGACTCACTGGCCAGATTCTCACACTTGGCAAGCTTCTCTCCTTCTGCGTTCACCTGGGTGATCTCCGT TACGCCCACCTCCTGTTTGATCAAACTCCCCAACCAAATAAGTTCATGTACAACCATTTAATAAGGGGTTATTCAAATAG TGATGACCCAAACAAGTCATTGTTGCTCTACCGCAAAATGGTTTGTGCTGGCATTATGCCAAACCAGTTCACCATCCTCT TTGTTCTCAAAGCTTGTTCTGCCAAACCCTCTTGTTGGGATGTTGCTGTTGTTCATGCTCAAGCTATTAAGCTAGGAATG GGGTCTCACGTCTGTGTGCAAAATGCTTTCTTGAGTCTCTATGTTGCTTGTCGTTTGATCCGAAGTGCGCGCCAAGTGTT TGATGATATTTCTGACCGGACGCTAGTCTCGTGGAATTCCATGATTGTTGGGTATTCTAAAATGGGTTTTTCCAAAGAAG CCATTTTGTTGTTTAAAGAAATGCAATACCTTGGAGTGGAGGCTGATATGTTCACCTTGGTTGGCTTGCTTTCTGTTGCT TTGAGGCATGGTAATTTGGATTTGGGAAGATTTGTGCATCTTTATATTGTTGTTGCCGAAATTGAAATTGATTCAATCGT GACTAATGCCCTCATAGATATGTATGCCAAGTGCGGGCATTTGCAATATGCTGAAACTGTTTTTGATCGAATGCTTGATA GAAATGTAGTTTCTTGGACTTGCATGATAAATGCTTATGCTAATCATGGGCTTATTGATCATGCTCTGGAAATTTTTGAT CAGATGCCAGTGAAAAATGCGGTTTCTTGGAATTCAATAATTTCGTGCCATGTTCAAGAAGGACAACACGCAGAAGCAAT GGAACTTTTCTGCAGGATGTGTGTTTCAGGAGTGATGCCTGACAATGCCACTCTTGTTAGCATTCTTTCCTCCTGTAGTC ACATGGGTGATCTGGCATTGGGAAAAAAAGCTCACGATTACATTTGTGACAACAATATTACAGTGAGTGTCACACTTTGT AACTCTCTAATGAACATGTATGCGAAATGTGGTGCTCTTCAGACTGCTATGGACATCTTCTTTGGAATGCCTCAGAAGAA TGTGGTGTCATGGAATGTTATTATTGGGGCACTTGCTCTTCATGGTTCTGGAAAAGAAGCTATTGAGATGTTTGAAAAGA TGCGAGCAAGTGGACTCTTTCCTGATGAGATCACATTCACAGGGTTACTTTCTGCTTGTAGTCACAGTGGTCTTGTGGAA ATGGGGAGATATTACTTTGGCTTAATGAGTTCAACTTTTGGGATTTCACCTGATGTTGCTCATTATGCATGCATGGTTGA TCTTTTAGGGCGCGGGGGATTCTTAGGAGAAGCAATGTCCCTGATACAAAAGTTGCCCATGAAACCGGATGCTGTTGTAT GGGGTGCTTTACTTGGTGCTTGCAAAACCTATGGGAATCTAGAGATGGGCAAGCAAATCTTGAAGCAGTTGTTGGAGCTG GGACGATATGATTCCGGGCTTTATGTGCTTCTCTCAAACATGTATTCAGAATCTCAAAGATGGGATGACATGAAAAAAAT CAGGAAAATAATGAATGACAGTGGGATAAAAAAGTGCAGGGCAATTAGCTCCATTGAAATTGATGGTTGTTGCTATCAAT TTATGGTGGATGACAAAAATCATGAAGTTTCAACCAGTATATACTCCATGGTGGATCAACTAATGGATCATTTGAAATCT GTAGGCTATCCATGTAAACATTCAGATGTTGAGGATATGTACTAGTCTAATATTTAGCTTAGCATGAGGTTGTTCTAGTT TAAACAGATGTTTCATATTTGAGTCTTTAACTTTGTTAAGTACTCATATTGTTTTGTTTTTCACAAAATCTAATTTTCAA ATAGTTGTATAATTTCAAAAGTAAAAACCAATGATTATTTCAGTC
CDS sequence (LotjaGi2g1v0396400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCTGTTCTAAAACTGAAACGGGCAAGCGTTGTCTCCCGCTTCTTTTGCGTAGTCTCTTTACACACACAAACACA AATCACAGAAATCACCAAAACCAAGTTAAACTCACCCACACACCAAACTCTTCACTGTCTCCTTGATCAATGTTCCTCAT TGAGACAACTCAAGCTTCTCCATGCCCAAATCATCCTCCATGGACTCACTGGCCAGATTCTCACACTTGGCAAGCTTCTC TCCTTCTGCGTTCACCTGGGTGATCTCCGTTACGCCCACCTCCTGTTTGATCAAACTCCCCAACCAAATAAGTTCATGTA CAACCATTTAATAAGGGGTTATTCAAATAGTGATGACCCAAACAAGTCATTGTTGCTCTACCGCAAAATGGTTTGTGCTG GCATTATGCCAAACCAGTTCACCATCCTCTTTGTTCTCAAAGCTTGTTCTGCCAAACCCTCTTGTTGGGATGTTGCTGTT GTTCATGCTCAAGCTATTAAGCTAGGAATGGGGTCTCACGTCTGTGTGCAAAATGCTTTCTTGAGTCTCTATGTTGCTTG TCGTTTGATCCGAAGTGCGCGCCAAGTGTTTGATGATATTTCTGACCGGACGCTAGTCTCGTGGAATTCCATGATTGTTG GGTATTCTAAAATGGGTTTTTCCAAAGAAGCCATTTTGTTGTTTAAAGAAATGCAATACCTTGGAGTGGAGGCTGATATG TTCACCTTGGTTGGCTTGCTTTCTGTTGCTTTGAGGCATGGTAATTTGGATTTGGGAAGATTTGTGCATCTTTATATTGT TGTTGCCGAAATTGAAATTGATTCAATCGTGACTAATGCCCTCATAGATATGTATGCCAAGTGCGGGCATTTGCAATATG CTGAAACTGTTTTTGATCGAATGCTTGATAGAAATGTAGTTTCTTGGACTTGCATGATAAATGCTTATGCTAATCATGGG CTTATTGATCATGCTCTGGAAATTTTTGATCAGATGCCAGTGAAAAATGCGGTTTCTTGGAATTCAATAATTTCGTGCCA TGTTCAAGAAGGACAACACGCAGAAGCAATGGAACTTTTCTGCAGGATGTGTGTTTCAGGAGTGATGCCTGACAATGCCA CTCTTGTTAGCATTCTTTCCTCCTGTAGTCACATGGGTGATCTGGCATTGGGAAAAAAAGCTCACGATTACATTTGTGAC AACAATATTACAGTGAGTGTCACACTTTGTAACTCTCTAATGAACATGTATGCGAAATGTGGTGCTCTTCAGACTGCTAT GGACATCTTCTTTGGAATGCCTCAGAAGAATGTGGTGTCATGGAATGTTATTATTGGGGCACTTGCTCTTCATGGTTCTG GAAAAGAAGCTATTGAGATGTTTGAAAAGATGCGAGCAAGTGGACTCTTTCCTGATGAGATCACATTCACAGGGTTACTT TCTGCTTGTAGTCACAGTGGTCTTGTGGAAATGGGGAGATATTACTTTGGCTTAATGAGTTCAACTTTTGGGATTTCACC TGATGTTGCTCATTATGCATGCATGGTTGATCTTTTAGGGCGCGGGGGATTCTTAGGAGAAGCAATGTCCCTGATACAAA AGTTGCCCATGAAACCGGATGCTGTTGTATGGGGTGCTTTACTTGGTGCTTGCAAAACCTATGGGAATCTAGAGATGGGC AAGCAAATCTTGAAGCAGTTGTTGGAGCTGGGACGATATGATTCCGGGCTTTATGTGCTTCTCTCAAACATGTATTCAGA ATCTCAAAGATGGGATGACATGAAAAAAATCAGGAAAATAATGAATGACAGTGGGATAAAAAAGTGCAGGGCAATTAGCT CCATTGAAATTGATGGTTGTTGCTATCAATTTATGGTGGATGACAAAAATCATGAAGTTTCAACCAGTATATACTCCATG GTGGATCAACTAATGGATCATTTGAAATCTGTAGGCTATCCATGTAAACATTCAGATGTTGAGGATATGTACTAG
Protein sequence (LotjaGi2g1v0396400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSVLKLKRASVVSRFFCVVSLHTQTQITEITKTKLNSPTHQTLHCLLDQCSSLRQLKLLHAQIILHGLTGQILTLGKLL SFCVHLGDLRYAHLLFDQTPQPNKFMYNHLIRGYSNSDDPNKSLLLYRKMVCAGIMPNQFTILFVLKACSAKPSCWDVAV VHAQAIKLGMGSHVCVQNAFLSLYVACRLIRSARQVFDDISDRTLVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADM FTLVGLLSVALRHGNLDLGRFVHLYIVVAEIEIDSIVTNALIDMYAKCGHLQYAETVFDRMLDRNVVSWTCMINAYANHG LIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCRMCVSGVMPDNATLVSILSSCSHMGDLALGKKAHDYICD NNITVSVTLCNSLMNMYAKCGALQTAMDIFFGMPQKNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLL SACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGEAMSLIQKLPMKPDAVVWGALLGACKTYGNLEMG KQILKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMNDSGIKKCRAISSIEIDGCCYQFMVDDKNHEVSTSIYSM VDQLMDHLKSVGYPCKHSDVEDMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Gene3D | 2 | 157 | 156 | 1.1E-5 | ||
| PANTHER | 27 | 151 | 125 | 6.9E-121 | – | |
| Pfam | 102 | 149 | 48 | 2.5E-7 | ||
| ProSiteProfiles | 103 | 137 | 35 | 10.545 | ||
| TIGRFAM | 106 | 138 | 33 | 1.5E-5 | ||
| Gene3D | 158 | 268 | 111 | 2.1E-15 | ||
| PANTHER | 159 | 261 | 103 | 6.9E-121 | – | |
| ProSiteProfiles | 173 | 203 | 31 | 5.261 | ||
| ProSiteProfiles | 204 | 238 | 35 | 10.896 | ||
| TIGRFAM | 206 | 235 | 30 | 3.8E-5 | ||
| Pfam | 206 | 236 | 31 | 3.2E-8 | ||
| PANTHER | 259 | 335 | 77 | 6.9E-121 | – | |
| Gene3D | 269 | 400 | 132 | 9.9E-33 | ||
| ProSiteProfiles | 274 | 304 | 31 | 9.175 | ||
| TIGRFAM | 279 | 307 | 29 | 1.5E-4 | ||
| Pfam | 304 | 333 | 30 | 1.3E-6 | ||
| ProSiteProfiles | 305 | 335 | 31 | 10.326 | ||
| TIGRFAM | 307 | 333 | 27 | 9.5E-7 | ||
| Pfam | 335 | 382 | 48 | 4.0E-10 | ||
| ProSiteProfiles | 336 | 370 | 35 | 11.86 | ||
| PANTHER | 338 | 393 | 56 | 6.9E-121 | – | |
| TIGRFAM | 338 | 371 | 34 | 6.0E-8 | ||
| ProSiteProfiles | 371 | 405 | 35 | 6.051 | ||
| PANTHER | 390 | 601 | 212 | 6.9E-121 | – | |
| Gene3D | 401 | 499 | 99 | 5.7E-13 | ||
| ProSiteProfiles | 406 | 436 | 31 | 7.98 | ||
| Pfam | 436 | 484 | 49 | 8.8E-12 | ||
| ProSiteProfiles | 437 | 471 | 35 | 11.751 | ||
| TIGRFAM | 439 | 473 | 35 | 4.4E-7 | ||
| ProSiteProfiles | 472 | 507 | 36 | 7.333 | ||
| TIGRFAM | 474 | 509 | 36 | 1.1E-4 | ||
| Gene3D | 500 | 658 | 159 | 2.1E-14 | ||
| ProSiteProfiles | 508 | 538 | 31 | 6.884 | ||
| ProSiteProfiles | 540 | 570 | 31 | 6.84 | ||
| ProSiteProfiles | 574 | 608 | 35 | 7.783 | ||
| Coils | 664 | 664 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0396400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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