Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0397600 |
| Transcript ID | LotjaGi2g1v0397600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G50420.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420; TrEMBL-Plants: tr|I1LHI2|I1LHI2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0397600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89487893..89490433) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAGGACATAATATCCGTTCATCTCCAAAAACAAACGGCGTGGTTTGCTGCTACATGAGCAAGGTATGTTACCGTGTA GCAGAGGCCCTTCAGCTGCAAAAATGCAGCACCACCACCTCACTACGAGAGGCGCGTCAACTCCACGCCCTCATATTAAC TACTGCTGCCACCACCTTCCGCTCGCCATCTCCGTTTGTGTACAACAACATCATCTCCATGTATGCACGCTGCGGTTCAC TCAGGGACTCACACCTCCTGTTCGACAAAATGCCTCAAAGAACTCTTGTTTCTTACAATGCTCTTATTGCAGCCTTTTCT CGAGTATCAGACCATGCCATTTCCGCCTTCAAATTGTATACCCATATGGAAACTAATGGTCTTAGGCCTTCCAGCTTGAC TTTTACTAGCTTGCTTCAAGCATCTGCCTTGCATCAAGATTGGTTGATTGGATCATTGCTTCATGCCAAGGGCTTTAAGT TTGGATTTTTGAATGATGTTCGTGTCCAAACTTCGTTGCTTAATATGTACTCAAATTGCCGGGATTTGAGTTCAGCTGAA TTGGTTTTCTGGGATATGGTGGATAGAGATAGTGTTGCTTGGAATTCTTTGATTATAGGATATCTGAAGAATGATAAGAT CAAGGAAGGTGTTCATCTCTTTATTTCAATGGTGCAGGCTGGTTTCACCCCAACCCAGTTCACTTATTCGATGGTCTTGA ATGCCTGTAGTCGTCTGAAAGATTATCATTCTGGGAGATTGGTCCATTCCCATGTAATTGTTAGGAATGTGTCTCCCGAT TTATATCTGCAAAATGCTCTGATTGATATGTACTGCAATGCTGGCAATGCAGAAGCAGCGAATAGGATTTTTTGTAGAAT GGAAAACCCGGATTTAGTTTCTTGGAATTCAATGATTGCTGGGTATTCTAACATTGAGGATGGAGAGAAGGCCATGAATC TGTTTGTCCAGTTGCTGGAATTGTGCTTTCCTAAACCAGATGACTATACATATGCTGGCATTATATCTGCAACTGGTGCA TTACCATCTTCCATTTATGGAAAACCTCTTCATGCTCAGGTTACTAAAGCAGGATATGAGAGATGTGTATTTGTAGGAAG TACTCTAGTGTCTATGTATTTCAAAAATCTTGAAACTGAAGCTGCTCAGGGGGTATTTTGTTCAATCTCTGAGAAGGATG TTGTTCTCTGGACTGAAATGATCACTGGTTATTCTAAAATGGCTGATGGAATGAGTGCAATTAGATGCTTTTCTGAAATG TTTCATGAAGCCCATGAGGTCGATGACTATATTCTGAGTGGAGTTTTGAGTGTATGTGCTGATCATGCAATTTTAAGACA AGGTGAAATAATCCATTGCTATGCAGTTAAACGGGGTTGTGATGTTGAAATGTATGTTTCTGGGAGTCTTATTGATATGT ACGCCAAAAGCGGTAGCCTCGATGCAGCATATCTGGTATTTTCTCAAGTCCCTGACCCTGATTTGAAGTGTTGGAACTCG ATGCTGGGAGGATATAGCCACCATGGAAGGGTAGAGGCGGCATTGACCCTTTTTGAGGAGATTCTTGAACAAGGTCTGAT CCCGGATCAAGTGACATTCTTGTCTCTATTGTCTGCTTGCAGCAACAGAAGGTTGGTTGAGCAAGGGAAGTTCTTCTGGA ATTATATGAACAGCATGGGTTTGGTTCCTGGGCCTAAGCACTACTCTTGCATGGTAACTTTGTTGAGCCGTGCAGCATTA CTAGAAGAGGCGGCAGACATTATCAAAGAGTCACCTTATATTGAAGATAATCTGGAACTGTGGAGAACTTTGCTAAGTGC CTGTGTTATAAATAAGAATTTGAAAGTGGGAGTTCATGCAGCTGAGGAAGTTTTGAGAGTGGATGCACAAGATGGACCGA CGCTTGTTTTGCTTTCTAATCTTTATGCTTCTGCAGGGAGATGGGTTGAAGTTGCAGAAATAAGAAGAAATATGAAGGGA TTGAGACTAGAGAAAGATCCAGGGTTAAGTTGGATTGAGGCCAAGAATGACATTCATGTGTTCACTTCCGGAGATCAATC CCACCCTAGGGTTGATGAGGTGCAGGATGAACTGAATAGCCTAAAAAGAAATATGATTAAGATAGATGCTGATGACAGTG AGCCACAAAAGACATGCTACGTAGATTGCAGAGGCTAAGTTTATGCCATAGATGTTGAATTTAATTCAAAATCGAATGAT GTATATACACGGGACTAAAAAATTGATAAAACTTAGGTCAAGTTCCTTAACCTCCATTTCATCAAGTTTATGTGTAATTT TTCTAATTTTGACAATAAATTCTTTATAAATGACATTTATTTTTAGAAATAGTTGTACATGTGTCATCACATAATTGGTA AACTTGATAAAATGGATTTAAGAAACTTGATCTAAGTTTCTCCCCTGAAAAAAAAAAAGAGGAGACTCAACCTCGAACCA CGTTGAGTTCAATGCTACAAAATAATGCCTATCCATTTGTGCATTGAGATCTATAAAAACA
CDS sequence (LotjaGi2g1v0397600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGGTATGTTACCGTGTAGCAGAGGCCCTTCAGCTGCAAAAATGCAGCACCACCACCTCACTACGAGAGGCGCG TCAACTCCACGCCCTCATATTAACTACTGCTGCCACCACCTTCCGCTCGCCATCTCCGTTTGTGTACAACAACATCATCT CCATGTATGCACGCTGCGGTTCACTCAGGGACTCACACCTCCTGTTCGACAAAATGCCTCAAAGAACTCTTGTTTCTTAC AATGCTCTTATTGCAGCCTTTTCTCGAGTATCAGACCATGCCATTTCCGCCTTCAAATTGTATACCCATATGGAAACTAA TGGTCTTAGGCCTTCCAGCTTGACTTTTACTAGCTTGCTTCAAGCATCTGCCTTGCATCAAGATTGGTTGATTGGATCAT TGCTTCATGCCAAGGGCTTTAAGTTTGGATTTTTGAATGATGTTCGTGTCCAAACTTCGTTGCTTAATATGTACTCAAAT TGCCGGGATTTGAGTTCAGCTGAATTGGTTTTCTGGGATATGGTGGATAGAGATAGTGTTGCTTGGAATTCTTTGATTAT AGGATATCTGAAGAATGATAAGATCAAGGAAGGTGTTCATCTCTTTATTTCAATGGTGCAGGCTGGTTTCACCCCAACCC AGTTCACTTATTCGATGGTCTTGAATGCCTGTAGTCGTCTGAAAGATTATCATTCTGGGAGATTGGTCCATTCCCATGTA ATTGTTAGGAATGTGTCTCCCGATTTATATCTGCAAAATGCTCTGATTGATATGTACTGCAATGCTGGCAATGCAGAAGC AGCGAATAGGATTTTTTGTAGAATGGAAAACCCGGATTTAGTTTCTTGGAATTCAATGATTGCTGGGTATTCTAACATTG AGGATGGAGAGAAGGCCATGAATCTGTTTGTCCAGTTGCTGGAATTGTGCTTTCCTAAACCAGATGACTATACATATGCT GGCATTATATCTGCAACTGGTGCATTACCATCTTCCATTTATGGAAAACCTCTTCATGCTCAGGTTACTAAAGCAGGATA TGAGAGATGTGTATTTGTAGGAAGTACTCTAGTGTCTATGTATTTCAAAAATCTTGAAACTGAAGCTGCTCAGGGGGTAT TTTGTTCAATCTCTGAGAAGGATGTTGTTCTCTGGACTGAAATGATCACTGGTTATTCTAAAATGGCTGATGGAATGAGT GCAATTAGATGCTTTTCTGAAATGTTTCATGAAGCCCATGAGGTCGATGACTATATTCTGAGTGGAGTTTTGAGTGTATG TGCTGATCATGCAATTTTAAGACAAGGTGAAATAATCCATTGCTATGCAGTTAAACGGGGTTGTGATGTTGAAATGTATG TTTCTGGGAGTCTTATTGATATGTACGCCAAAAGCGGTAGCCTCGATGCAGCATATCTGGTATTTTCTCAAGTCCCTGAC CCTGATTTGAAGTGTTGGAACTCGATGCTGGGAGGATATAGCCACCATGGAAGGGTAGAGGCGGCATTGACCCTTTTTGA GGAGATTCTTGAACAAGGTCTGATCCCGGATCAAGTGACATTCTTGTCTCTATTGTCTGCTTGCAGCAACAGAAGGTTGG TTGAGCAAGGGAAGTTCTTCTGGAATTATATGAACAGCATGGGTTTGGTTCCTGGGCCTAAGCACTACTCTTGCATGGTA ACTTTGTTGAGCCGTGCAGCATTACTAGAAGAGGCGGCAGACATTATCAAAGAGTCACCTTATATTGAAGATAATCTGGA ACTGTGGAGAACTTTGCTAAGTGCCTGTGTTATAAATAAGAATTTGAAAGTGGGAGTTCATGCAGCTGAGGAAGTTTTGA GAGTGGATGCACAAGATGGACCGACGCTTGTTTTGCTTTCTAATCTTTATGCTTCTGCAGGGAGATGGGTTGAAGTTGCA GAAATAAGAAGAAATATGAAGGGATTGAGACTAGAGAAAGATCCAGGGTTAAGTTGGATTGAGGCCAAGAATGACATTCA TGTGTTCACTTCCGGAGATCAATCCCACCCTAGGGTTGATGAGGTGCAGGATGAACTGAATAGCCTAAAAAGAAATATGA TTAAGATAGATGCTGATGACAGTGAGCCACAAAAGACATGCTACGTAGATTGCAGAGGCTAA
Protein sequence (LotjaGi2g1v0397600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKVCYRVAEALQLQKCSTTTSLREARQLHALILTTAATTFRSPSPFVYNNIISMYARCGSLRDSHLLFDKMPQRTLVSY NALIAAFSRVSDHAISAFKLYTHMETNGLRPSSLTFTSLLQASALHQDWLIGSLLHAKGFKFGFLNDVRVQTSLLNMYSN CRDLSSAELVFWDMVDRDSVAWNSLIIGYLKNDKIKEGVHLFISMVQAGFTPTQFTYSMVLNACSRLKDYHSGRLVHSHV IVRNVSPDLYLQNALIDMYCNAGNAEAANRIFCRMENPDLVSWNSMIAGYSNIEDGEKAMNLFVQLLELCFPKPDDYTYA GIISATGALPSSIYGKPLHAQVTKAGYERCVFVGSTLVSMYFKNLETEAAQGVFCSISEKDVVLWTEMITGYSKMADGMS AIRCFSEMFHEAHEVDDYILSGVLSVCADHAILRQGEIIHCYAVKRGCDVEMYVSGSLIDMYAKSGSLDAAYLVFSQVPD PDLKCWNSMLGGYSHHGRVEAALTLFEEILEQGLIPDQVTFLSLLSACSNRRLVEQGKFFWNYMNSMGLVPGPKHYSCMV TLLSRAALLEEAADIIKESPYIEDNLELWRTLLSACVINKNLKVGVHAAEEVLRVDAQDGPTLVLLSNLYASAGRWVEVA EIRRNMKGLRLEKDPGLSWIEAKNDIHVFTSGDQSHPRVDEVQDELNSLKRNMIKIDADDSEPQKTCYVDCRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 130 | 124 | 6.3E-19 | ||
| PANTHER | 14 | 123 | 110 | 5.2E-116 | – | |
| ProSiteProfiles | 45 | 75 | 31 | 9.065 | ||
| Pfam | 48 | 75 | 28 | 0.0016 | ||
| ProSiteProfiles | 76 | 111 | 36 | 10.15 | ||
| Pfam | 77 | 122 | 46 | 5.0E-9 | ||
| Gene3D | 134 | 229 | 96 | 2.8E-19 | ||
| PANTHER | 135 | 234 | 100 | 5.2E-116 | – | |
| ProSiteProfiles | 147 | 177 | 31 | 6.971 | ||
| Pfam | 152 | 177 | 26 | 0.8 | ||
| Pfam | 178 | 225 | 48 | 9.4E-12 | ||
| ProSiteProfiles | 178 | 212 | 35 | 11.4 | ||
| TIGRFAM | 180 | 213 | 34 | 5.4E-5 | ||
| ProSiteProfiles | 213 | 247 | 35 | 7.991 | ||
| Gene3D | 230 | 329 | 100 | 1.6E-18 | ||
| PANTHER | 233 | 326 | 94 | 5.2E-116 | – | |
| Pfam | 243 | 289 | 47 | 1.2E-4 | ||
| ProSiteProfiles | 248 | 282 | 35 | 9.306 | ||
| TIGRFAM | 252 | 276 | 25 | 9.1E-4 | ||
| ProSiteProfiles | 283 | 313 | 31 | 5.514 | ||
| PANTHER | 335 | 436 | 102 | 5.2E-116 | – | |
| Gene3D | 338 | 442 | 105 | 1.7E-10 | ||
| ProSiteProfiles | 381 | 415 | 35 | 7.881 | ||
| Pfam | 383 | 408 | 26 | 0.56 | ||
| PANTHER | 420 | 647 | 228 | 5.2E-116 | – | |
| Gene3D | 443 | 533 | 91 | 2.9E-20 | ||
| ProSiteProfiles | 451 | 481 | 31 | 6.095 | ||
| Pfam | 457 | 477 | 21 | 0.86 | ||
| Pfam | 481 | 529 | 49 | 2.0E-10 | ||
| ProSiteProfiles | 482 | 516 | 35 | 12.386 | ||
| TIGRFAM | 485 | 517 | 33 | 3.1E-8 | ||
| ProSiteProfiles | 517 | 551 | 35 | 9.164 | ||
| Gene3D | 534 | 676 | 143 | 8.0E-10 | ||
| ProSiteProfiles | 619 | 653 | 35 | 6.401 | ||
| Coils | 679 | 699 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0397600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…