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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398400 |
| Transcript ID | LotjaGi2g1v0398400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT4G37180.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|V7CFC0|V7CFC0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0398400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89564272..89566749) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGATGGGGATTTGTTGGAGAGTTAATTTACGGAGCAGGACAAAGGAAGACGCGACGACTCGAAAGCGCACACGGAAT CTTTTTGTCCTGAATCTGAATTTTTCCTTTCTTCTATAATCTATAATCTATACTATAAAATCCATCCATGAATCTCTCTC TATCCCCTTAGTTTTATTTTCACCTCAATCAGGTTATGCTAGTTTAACATCATCATGGACCTGTGTTTGGATTTGAGTTT AGCCTCTTCCCCTTCCCTGTTTCTCGGTGATGTTTCTCGCAGGAGCAGAGACATGTCTGAGAAACTCGCCATGCTTGAGA ACTATGTTCAGAGATTGGAGGATGAAATGAACAAGGTTGAAGCCTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTGGTC AAAGAAGGTACTGTTCTTCTTCTTCTTCTTTTTCTTGTCTTATCTTCTGATTTTGTCAAACCAATTGTTTTTTAATTTAA TTTTGTTGTTTGATTTGATGATCTTGCTGGTTATGCAGCCATAGCAAGGTTGAAGGAGGAAAAACTCCAGTGTTTGGGAA AGCAAGATCCACCTGCTGCTGCTGCTGCTGCTGCTGAAGAATCCACGCCCAATTGTGGAGCTAATGGGAAAGGACCAGGG ATTACCATGGAAAAGGACAAGAACAATTGGATGAGCACAGTTCAGCTATGGTGCGCACAAACCAAATCGGTACGGTAATG CTTAATTTTTCATTCTGGTTTCGTATTGAAAGCCTAATTATTTGGTAATTTTTTTGTGAAATTAAGACAATTTTTTTTGG AATTGTAGAAGAATGTAGAAGGTGATAGGTCTGTGCCTGAGAAACCAATTCAACTAATGAATCCAAATAAGACTAGTGTT GGGGGAGGGTTTATGACATTCATTGCGGATTCGCGTGTTCCTAAGGAGGTTTCACATGTTCCAAGCTTCAAAATCACTCC GGCGGCTCAACTGAGTCATAGCAATTCCAAGAGTGGTTGCGGTGGAGGTAGTAGCTCTGAACTGAGTCAACCGCAACCGC AACCACCGCATCATTTGCTGCGGCAAAATCAAAATCCCAGGAAGCAAAGGAGATGCTGGTCCCCGGAGCTTCATCGGCGT TTTGTTGACGCGCTTCAACAACTTGGAGGAGCTCAAGGTACTAGATTATAGTAGTATTCAACAAGGCCTAATTGTTTTTC CTCTTGCAAAGTTTTTGTTTGAGGGGTTTGAGAAGTGTCACGTTAAATAGATATATGACCACATAAGACTTTCTATATGG TAGAGCAAGTGAGCAACTCTAACCCTTCGGCTAGCTTTCGCGATGGAGTTAGACTTAACCCGAATTCTAATTGAGGGGTT TTGTTTACTGTAGAGGATTTCTTTGTCTAGGAATTGAAATTGTTGGTCTTGTTCTGTGTGGTGTGTGTACCTAATTGGTT TGTTTTGTTTTGCAGAGGCCACTCCTAAACAGATTAGAGATCTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTCAAA AGCCATTTGCAAGTGAGTGTTTGTATTTAATCACATTAGTAGCATGTTTGGATAAATTTCTTAATCTGAATAAATTCTAA AACACAGAAGCTACGCACAAAAACTCATCCCTGAAATTGATTTTGATTTCAGAATCAATCAATGCAGAAAGATTTACAAG CATCCACTAGATTAGACTACCAATGGCTGCTATCATTATTTTCTTCATGTTTGTCATCTTTTGCCTTCAACAAATTAACT AGATTTGTGTGGTTTGGTTTATGCAGAAGTACAGGCTTCACGTTAGAAGATTCCCAATTTCTTCTAATGGCCAAGCTAAT AATGGCTTATGGATGGTCCAAGATCAATCTGGAGATAAATCAAAGGGAAGCTTATCACAATCTGGTTCTCCACAAGGTCC TCTTACACCTCTTCTCCTGGGAGGTTCTGTTAAAGGCCTTTCAAGCCCTGGACGAAACAGTGCAGATGCTGAAGATGAGC AATCAGATTGCTGGAATTGGAAAGGTGCTGATAATCAGAGCCTCTAAAATTTTGCAGATAAATTATAATAAAGTAAACCC AAAATTTGACAATATGAAAATAATAGATCTAACTCAGAGAATTATAGAAGGGATCAAGTTTATGCTATAGTTTTTTTTTT AAACTGTTCTGGAGAGGGCCCTGAGATGTTGCAGATTTTTTCAGGCTTTTTTTCCCTGTGTTATTGCAAGAGGCTTTTTT GTGACAACTTATAGCTAATAACCAATATGGTTGTATGTAGCTGCAATTTTACATGACAAATTTCAAACATAATCTCCGTT TCTGAATTGTGCTTTAGTTGCTTGGCTATTGGGTGTTGAATTTTATGCAAGTGCTACACAGTATGGCATTATCCACCATA TATCCATTTTGGGTGTTGCGGTTAGCACTTCCATAAGAGGATCCATGATGCTTATTAGTTGTTATTCCTCAAAGTACA
CDS sequence (LotjaGi2g1v0398400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTGTGTTTGGATTTGAGTTTAGCCTCTTCCCCTTCCCTGTTTCTCGGTGATGTTTCTCGCAGGAGCAGAGACAT GTCTGAGAAACTCGCCATGCTTGAGAACTATGTTCAGAGATTGGAGGATGAAATGAACAAGGTTGAAGCCTTCAAACGCG AGCTCCCTCTTTGCATGCTCCTGGTCAAAGAAGCCATAGCAAGGTTGAAGGAGGAAAAACTCCAGTGTTTGGGAAAGCAA GATCCACCTGCTGCTGCTGCTGCTGCTGCTGAAGAATCCACGCCCAATTGTGGAGCTAATGGGAAAGGACCAGGGATTAC CATGGAAAAGGACAAGAACAATTGGATGAGCACAGTTCAGCTATGGTGCGCACAAACCAAATCGAATGTAGAAGGTGATA GGTCTGTGCCTGAGAAACCAATTCAACTAATGAATCCAAATAAGACTAGTGTTGGGGGAGGGTTTATGACATTCATTGCG GATTCGCGTGTTCCTAAGGAGGTTTCACATGTTCCAAGCTTCAAAATCACTCCGGCGGCTCAACTGAGTCATAGCAATTC CAAGAGTGGTTGCGGTGGAGGTAGTAGCTCTGAACTGAGTCAACCGCAACCGCAACCACCGCATCATTTGCTGCGGCAAA ATCAAAATCCCAGGAAGCAAAGGAGATGCTGGTCCCCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGA GGAGCTCAAGAGGCCACTCCTAAACAGATTAGAGATCTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTCAAAAGCCA TTTGCAAAAGTACAGGCTTCACGTTAGAAGATTCCCAATTTCTTCTAATGGCCAAGCTAATAATGGCTTATGGATGGTCC AAGATCAATCTGGAGATAAATCAAAGGGAAGCTTATCACAATCTGGTTCTCCACAAGGTCCTCTTACACCTCTTCTCCTG GGAGGTTCTGTTAAAGGCCTTTCAAGCCCTGGACGAAACAGTGCAGATGCTGAAGATGAGCAATCAGATTGCTGGAATTG GAAAGGTGCTGATAATCAGAGCCTCTAA
Protein sequence (LotjaGi2g1v0398400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLCLDLSLASSPSLFLGDVSRRSRDMSEKLAMLENYVQRLEDEMNKVEAFKRELPLCMLLVKEAIARLKEEKLQCLGKQ DPPAAAAAAAEESTPNCGANGKGPGITMEKDKNNWMSTVQLWCAQTKSNVEGDRSVPEKPIQLMNPNKTSVGGGFMTFIA DSRVPKEVSHVPSFKITPAAQLSHSNSKSGCGGGSSSELSQPQPQPPHHLLRQNQNPRKQRRCWSPELHRRFVDALQQLG GAQEATPKQIRDLMQVEGLTNDEVKSHLQKYRLHVRRFPISSNGQANNGLWMVQDQSGDKSKGSLSQSGSPQGPLTPLLL GGSVKGLSSPGRNSADAEDEQSDCWNWKGADNQSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 352 | 352 | 1.0E-114 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 352 | 352 | 1.0E-114 | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 355 | 337 | - | – | |
| Coils | 24 | 54 | 31 | - | – | |
| MobiDBLite | 179 | 224 | 46 | - | – | |
| MobiDBLite | 179 | 221 | 43 | - | – | |
| ProSiteProfiles | 216 | 276 | 61 | 14.851 | ||
| Gene3D | 216 | 278 | 63 | 2.8E-27 | – | |
| SUPERFAMILY | 217 | 277 | 61 | 6.27E-18 | ||
| TIGRFAM | 219 | 274 | 56 | 1.4E-26 | ||
| Pfam | 221 | 272 | 52 | 3.6E-6 | ||
| MobiDBLite | 284 | 355 | 72 | - | – | |
| MobiDBLite | 284 | 314 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0398400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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