Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398400 |
| Transcript ID | LotjaGi2g1v0398400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT4G37180.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|V7CFC0|V7CFC0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0398400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89564278..89567146) extracted from Lotus japonicus Gifu genome v1.2.
TGGGGATTTGTTGGAGAGTTAATTTACGGAGCAGGACAAAGGAAGACGCGACGACTCGAAAGCGCACACGGAATCTTTTT GTCCTGAATCTGAATTTTTCCTTTCTTCTATAATCTATAATCTATACTATAAAATCCATCCATGAATCTCTCTCTATCCC CTTAGTTTTATTTTCACCTCAATCAGGTTATGCTAGTTTAACATCATCATGGACCTGTGTTTGGATTTGAGTTTAGCCTC TTCCCCTTCCCTGTTTCTCGGTGATGTTTCTCGCAGGAGCAGAGACATGTCTGAGAAACTCGCCATGCTTGAGAACTATG TTCAGAGATTGGAGGATGAAATGAACAAGGTTGAAGCCTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTGGTCAAAGAA GGTACTGTTCTTCTTCTTCTTCTTTTTCTTGTCTTATCTTCTGATTTTGTCAAACCAATTGTTTTTTAATTTAATTTTGT TGTTTGATTTGATGATCTTGCTGGTTATGCAGCCATAGCAAGGTTGAAGGAGGAAAAACTCCAGTGTTTGGGAAAGCAAG ATCCACCTGCTGCTGCTGCTGCTGCTGCTGAAGAATCCACGCCCAATTGTGGAGCTAATGGGAAAGGACCAGGGATTACC ATGGAAAAGGACAAGAACAATTGGATGAGCACAGTTCAGCTATGGTGCGCACAAACCAAATCGGTACGGTAATGCTTAAT TTTTCATTCTGGTTTCGTATTGAAAGCCTAATTATTTGGTAATTTTTTTGTGAAATTAAGACAATTTTTTTTGGAATTGT AGAAGAATGTAGAAGGTGATAGGTCTGTGCCTGAGAAACCAATTCAACTAATGAATCCAAATAAGACTAGTGTTGGGGGA GGGTTTATGACATTCATTGCGGATTCGCGTGTTCCTAAGGAGGTTTCACATGTTCCAAGCTTCAAAATCACTCCGGCGGC TCAACTGAGTCATAGCAATTCCAAGAGTGGTTGCGGTGGAGGTAGTAGCTCTGAACTGAGTCAACCGCAACCGCAACCAC CGCATCATTTGCTGCGGCAAAATCAAAATCCCAGGAAGCAAAGGAGATGCTGGTCCCCGGAGCTTCATCGGCGTTTTGTT GACGCGCTTCAACAACTTGGAGGAGCTCAAGGTACTAGATTATAGTAGTATTCAACAAGGCCTAATTGTTTTTCCTCTTG CAAAGTTTTTGTTTGAGGGGTTTGAGAAGTGTCACGTTAAATAGATATATGACCACATAAGACTTTCTATATGGTAGAGC AAGTGAGCAACTCTAACCCTTCGGCTAGCTTTCGCGATGGAGTTAGACTTAACCCGAATTCTAATTGAGGGGTTTTGTTT ACTGTAGAGGATTTCTTTGTCTAGGAATTGAAATTGTTGGTCTTGTTCTGTGTGGTGTGTGTACCTAATTGGTTTGTTTT GTTTTGCAGAGGCCACTCCTAAACAGATTAGAGATCTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTCAAAAGCCAT TTGCAAGTGAGTGTTTGTATTTAATCACATTAGTAGCATGTTTGGATAAATTTCTTAATCTGAATAAATTCTAAAACACA GAAGCTACGCACAAAAACTCATCCCTGAAATTGATTTTGATTTCAGAATCAATCAATGCAGAAAGATTTACAAGCATCCA CTAGATTAGACTACCAATGGCTGCTATCATTATTTTCTTCATGTTTGTCATCTTTTGCCTTCAACAAATTAACTAGATTT GTGTGGTTTGGTTTATGCAGAAGTACAGGCTTCACGTTAGAAGATTCCCAATTTCTTCTAATGGCCAAGCTAATAATGGC TTATGGATGGTCCAAGATCAATCTGGAGATAAATCAAAGGGAAGCTTATCACAATCTGGTTCTCCACAAGGTCCTCTTAC ACCTCTTCTCCTGGGAGGTTCTGTTAAAGGCCTTTCAAGCCCTGGACGAAACAGTGCAGATGCTGAAGATGAGCAATCAG ATTGCTGGAATTGGAAAGGTGCTGATAATCAGAGCCTCTAAAATTTTGCAGATAAATTATAATAAAGTAAACCCAAAATT TGACAATATGAAAATAATAGATCTAACTCAGAGAATTATAGAAGGGATCAAGTTTATGCTATAGTTTTTTTTTTAAACTG TTCTGGAGAGGGCCCTGAGATGTTGCAGATTTTTTCAGGCTTTTTTTCCCTGTGTTATTGCAAGAGGCTTTTTTGTGACA ACTTATAGCTAATAACCAATATGGTTGTATGTAGCTGCAATTTTACATGACAAATTTCAAACATAATCTCCGTTTCTGAA TTGTGCTTTAGTTGCTTGGCTATTGGGTGTTGAATTTTATGCAAGTGCTACACAGTATGGCATTATCCACCATATATCCA TTTTGGGTGTTGCGGTTAGCACTTCCATAAGAGGATCCATGATGCTTATTAGTTGTTATTCCTCAAAGTACACCAACAAT AGTTGATGTCAATTGTCACATGAAATTGTTGAGTGGACAATATATTGGTGTTGTCTCGCGTATCCTTATGGTCGCATGAG AATATTGACAGCTACTCTGCCTAATTTATGCAGACGTGATTTTCTGCATTTTGGCTGGATCTTATTTAAGGTTGGATTGA AGTTTCTGATTTTTCAAGCAGTACTACAGTTTTCATTGTGAATAATAGCTTTTTATGCAGTAATAATCCAAGGTTTTTGG AGGTATAGTAGGGGTGAGAATATGTTGGAGGAGAGAGATAGAAATAAAAATGAGTGAAAATTGAGTGTTTATAAAATGAG GTGTGTACATATCATTGTTAGTTAGAGGCCTAAGTCAGACCAATTACCTGTTATATTGATTTGGCCATC
CDS sequence (LotjaGi2g1v0398400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTGTGTTTGGATTTGAGTTTAGCCTCTTCCCCTTCCCTGTTTCTCGGTGATGTTTCTCGCAGGAGCAGAGACAT GTCTGAGAAACTCGCCATGCTTGAGAACTATGTTCAGAGATTGGAGGATGAAATGAACAAGGTTGAAGCCTTCAAACGCG AGCTCCCTCTTTGCATGCTCCTGGTCAAAGAAGCCATAGCAAGGTTGAAGGAGGAAAAACTCCAGTGTTTGGGAAAGCAA GATCCACCTGCTGCTGCTGCTGCTGCTGCTGAAGAATCCACGCCCAATTGTGGAGCTAATGGGAAAGGACCAGGGATTAC CATGGAAAAGGACAAGAACAATTGGATGAGCACAGTTCAGCTATGGTGCGCACAAACCAAATCGAAGAATGTAGAAGGTG ATAGGTCTGTGCCTGAGAAACCAATTCAACTAATGAATCCAAATAAGACTAGTGTTGGGGGAGGGTTTATGACATTCATT GCGGATTCGCGTGTTCCTAAGGAGGTTTCACATGTTCCAAGCTTCAAAATCACTCCGGCGGCTCAACTGAGTCATAGCAA TTCCAAGAGTGGTTGCGGTGGAGGTAGTAGCTCTGAACTGAGTCAACCGCAACCGCAACCACCGCATCATTTGCTGCGGC AAAATCAAAATCCCAGGAAGCAAAGGAGATGCTGGTCCCCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTT GGAGGAGCTCAAGAGGCCACTCCTAAACAGATTAGAGATCTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTCAAAAG CCATTTGCAAAAGTACAGGCTTCACGTTAGAAGATTCCCAATTTCTTCTAATGGCCAAGCTAATAATGGCTTATGGATGG TCCAAGATCAATCTGGAGATAAATCAAAGGGAAGCTTATCACAATCTGGTTCTCCACAAGGTCCTCTTACACCTCTTCTC CTGGGAGGTTCTGTTAAAGGCCTTTCAAGCCCTGGACGAAACAGTGCAGATGCTGAAGATGAGCAATCAGATTGCTGGAA TTGGAAAGGTGCTGATAATCAGAGCCTCTAA
Protein sequence (LotjaGi2g1v0398400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLCLDLSLASSPSLFLGDVSRRSRDMSEKLAMLENYVQRLEDEMNKVEAFKRELPLCMLLVKEAIARLKEEKLQCLGKQ DPPAAAAAAAEESTPNCGANGKGPGITMEKDKNNWMSTVQLWCAQTKSKNVEGDRSVPEKPIQLMNPNKTSVGGGFMTFI ADSRVPKEVSHVPSFKITPAAQLSHSNSKSGCGGGSSSELSQPQPQPPHHLLRQNQNPRKQRRCWSPELHRRFVDALQQL GGAQEATPKQIRDLMQVEGLTNDEVKSHLQKYRLHVRRFPISSNGQANNGLWMVQDQSGDKSKGSLSQSGSPQGPLTPLL LGGSVKGLSSPGRNSADAEDEQSDCWNWKGADNQSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 353 | 353 | 1.6E-115 | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 353 | 353 | 1.6E-115 | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 356 | 338 | - | – | |
| Coils | 24 | 54 | 31 | - | – | |
| MobiDBLite | 129 | 149 | 21 | - | – | |
| MobiDBLite | 180 | 225 | 46 | - | – | |
| MobiDBLite | 180 | 222 | 43 | - | – | |
| Gene3D | 217 | 279 | 63 | 2.8E-27 | – | |
| ProSiteProfiles | 217 | 277 | 61 | 14.851 | ||
| SUPERFAMILY | 218 | 278 | 61 | 6.27E-18 | ||
| TIGRFAM | 220 | 275 | 56 | 1.4E-26 | ||
| Pfam | 222 | 273 | 52 | 3.6E-6 | ||
| MobiDBLite | 285 | 315 | 31 | - | – | |
| MobiDBLite | 285 | 356 | 72 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0398400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…