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LotjaGi2g1v0405700.3

Overview

Field Value
Gene ID LotjaGi2g1v0405700
Transcript ID LotjaGi2g1v0405700.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90236510..90242158) extracted from Lotus japonicus Gifu genome v1.2.

GCATATACCTGCCTCTTTGGTAGATTTAGAGGGGCTGAAATCTCTCTTCATTAATTGGTTAATTGTTGTTTTACTCTGTT TCTGTTTTTACTTTTTAGTTAAGGAAAAGTTAGGAAAAACTTTTTTCTGTTTTAAAATAGAAAAAAAAAAATTAGTCCAA AAAGTTAGTAATCATTAGTATTAATGCTAACCATTATACCACCCCCCTTGAAAAAAGACTTTTGTAACTAATTCTTTTTT ATGTACAAAAAATTAATTTGCTACTCTGATTTCTACCAGTGCATGCTTCTTGTGAGATGCAGGTTATGAGAAGCTTAGCC TTTTCAAAGGGCCTGCCAGCATTGCATAGTAGTAGATATCAAATCCATGATCAAAGCAGCTCCATTTCTGAAGTTAGTTT CTTTATGTTTGTTTACCTCTTTCTTCTGTATACTGCTCTGAATCCCACTTCTTAGAGGATTTGTTATTTCTACTTGTTTA AAGCCATATGAAATTTAATTTCCTTTACATTTACACTTCTATAGATGTAGAACAAAATTTAAGAATATAATCTGAGTATT CAAACTGAATCATTTATACATTTCTCAATTGTGGTACTCATAAAAAATTCTATGTAACAACTTGGATGTTTTAGACTACT ACAGAGTACAGATATATTCAGTCATTAAAACTATTAAGAATTCAATATTGAAGGTTCTCATGTCCAATTTTACAAGTTTT CAGTTATTTATTCATTCTTAGTCTTCTATTGAGATACATATACTGTTGTCAGGAAGAACTTGATCCATTTTCACTGGTTG CTGATGAACTGTCTTTTATTGCCAACAACTTGCGAGCAATGGTAATTGCTGAGGTATGAGACTGTTCTTTATTTTCTTCT AATACATGTATGCTTGGAAGAAGTAAAAAATTTAGGCTTAATTACAGTGTTGAAGTCGGGTCTATTTCATGGTGAAATTT GGGTATATATGGCAGGTTCCTAAGCTTGCCTCAGGTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCG TCCCACGGTAAGAATATTTCTAATCATAAGCTGTCCTTTAAAATACTCCCCTAATTTTTTCTAGCATAGCTTAAGGATTC ATATAACTTGGTTTGCCTAGTAAAATTTGAGTCCTAATCTGCGCACTTCGGTTTATGCTGATTTTTCTCCTTGCTTATTT AGTTCTAGTTTCTACCCATGCAATTAACTCCCATAGTTTTAGTGGTAAAATGTATAATTTTGAGTGCATCTAATATCTTC AATGCTTTCATGTGCGAGATATGGGTTAATGGATGGTTATTTATGCAGGTTTTATTGTTAATGTCAACAGCATTAAATCT ACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAGGTACTTTTACAGCTGATCTACGCTCAAGACAGCAACGCATAG CTGAAATAACAGAGATGATTCATGTTAGTTCTTTAGAAAAATTCCTTTTGTTAAGTAAATAATGCTTTCATAATAATGTT GATTATCTTAAGAAGAATAAATACTGATTTATTTTTCTTGTCGGACACTCAATTATACTGTTTCTTATGTTTATACCTTG GTTACGAATACTTCTTCAAATATCTTAACACATAAAGTGCAGATTCAAATGTGTGAAAGGGGATTCTCAAAATACATGCA ATTTTCTTGTTTATACTGTTTCTGCCATCTTCCATGCTTTCGTTTATGAGTTTGCTTTTGTTGTTTCTTTTCTAGCTATG TTGTCAATGACTCTTGTATGTTACTGTTTTCTTGTTTAATTGGTTGTACCGGTTCCTCTTTGTCATCCTTTCTTGAACAT GACCCACCATTATTCAATCTTGGACTTGTTTGGTATCCAGCTATCGATCTATGTGTTCTTTGCCTCATGATTGAATTATG AAATTATTAAGAAATGTAAGATGTACCGTAAATCAGAACTTACTATGTTCATTAGCTGGTAGTTCGAGTTGGAAGACCGC GCTTGTACTTGTCATAAGACAGAAGAAAGCAGTGAATTGTGTTTATGATCTCCTTCTGATACTTTTTTTATGGCTGTTTT AAGGGAATATCCATTCCTGTCAGGCTTCGAGATTTGACAACTTTGTTGCACTTTCTAACCTCTTCGTCTCGGTGTTTTCA ATTTGGTTTTCCTAATACACCACTTTTTTGTTGGTTCCTCTTTTTCCTCTACAAAAATTCATTAAAAGAATTACTTTTTA TTAGCTATCCGGTACTGCTGTATTTTGGAGGGTGATTTTACGAAGTAATTCTAAGTTCCTTTGCTGAGTCATAGACATCT TCCTAATTTTTTCCTCCATTCTTGTTATATTATTATCTTATCTTACCAATTATATTAAGATCTGTAAATTTTGTTGGTCC CCAGGACCATCATTTATTAGGTATGGCATGTGAGAACAAAAATGGGAAGATAACTGTGACAATAAAAGCTTGCTTATGAG AAAAAATAACTGCAATCTTATCAAATTCACTGAGCTGCTAGTTCTTGTAGTATAAGATTGTTTTTTGGGCTGATGTAGTA TTATTATGCATTATTTAGGCTCCATCAAGTTCACATTGTCTGTGCATGAAATGAATAGCTACCTCCGACCTGTAATAGTG ACAAAATCGTTTCAAAGCTCATACATTTGGACCAAGCAACAATGCCACCGCAATATATTTTTGTCCTTTAAATGGTGTAG GAGCATCACTGGGTCTGTTCATTGCTTTACCTTTACTCTCTAAAGATTTCTAAAACTTTGCATTCAAGTAATATATTAAC TATCTCTTGCGTTTGTTCCCTTCTATAAGTTGATGAATTTAAGCATTTTATGAACTTTTCTCTATGAAGGTAGCTGTCTT TTGCCACTATTTTCTGAAAGAACTGGTTGTTTTAAATCATTGTTTAGGTTGAAAGTAGACAAAGTACCCGGTAATATTGA AACACCTTTTATGGTGCAAAATTTTACTCAGCCTTGTGCTCCTTTCCATCTTTATCCCCTACCAGCGAGAAAATAGGAAA ATATTAATTTAATCAAACTAACTGGGTTATAATTTTGCCATAGGTGGCTAGCCTTCTTCACGATGATGTTTTAGATGATG CAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTAATGGGCAACAAGGTATATATCAACTTGTGTTTGTTTTTCCTG CATTTTTTAAAAATATTTTTGTGATGTTTTTTGTCGTGGATGTAGCTTGCCTGAGGTGGTTGCTTTTTTCTATATTCTTT TGCAGTTGGCAGTGTTAGCTGGAGATTTTTTGCTTTCAAGGGCTTGTGTTGCGCTGGCTTCTTTGAAAAACACTGAGGTA AGGTAAATGTGCGAGATTTTGTATATGTAATATTCTGAAGATGTATCTAGTTTCCTTGATGATGAAATAATTATGCACCT TGAGCATTTTATTTGCCTAAATACTGCATTTCTATAGGTTGTATCTTTGTTGGCAAAAGTTGTAGAGCATCTTGTAACAG GGGAGACCATGCAAATGAGTACTACATCAGATCAAAGGTGTAGGTATGCTTTGTGTTTGTGTCACACGTGCATCTATGTT CTATGTACATAAAAATTTATCTTTAGTTTACATAATTTGTATTACTAATTTACTATAAGTGATTGATGGGTTCTTGATGA AATTCTTTGTTTATTCCGTATCTATATAATTAGTAGTTAATTGCGAAAGTTCATTTAATTTTCTCAAGCACAAAACACAT AATTGTAAGAAAGTCTTAAGAATGCGTTGAATCCTTAGAGATATATAGGGTACTTTAAGGTATCTTTGATTTCTAACAAA TGTTTATATTTTCAGTATGGAATATTATATGCAAAAGACATACTACAAGACTGCATCATTGATTTCCAATAGTTGCAAGG CAATAGCCATCCTTGCTGGCCAAACAGCTGACGTTGCAATGCTTGCTTTTGACTATGGAAAAAATCTGGTTTGTATTAGA TTTTAAGTATAATGAGGCACTTTCGTTGTAAATAATATGCATAAAAACTGTGAATCTTTGCACAACAAGAATAAATGAAA GTAAGCCTCAAAGACGTATCTTGTTATATACATGCCTGTTTTTGAAATTTTCTGAATGGCATAATTAAATTCCCCCCTCC TTTTTTCCCAGGGATTGGCGTTTCAATTGATAGATGATGTTCTTGACTTCACAGGCACCTCTGCTTCCCTCGGAAAGGGT TCTTTGTCAGACATTCGCCATGTAATTTCATAATTTCTTGTTTTTCGAAATTCCACCAATCTTGAGTTTGACTTTTCTAT GTAATTCAAATTATCTGATGAAAGCCTATGAATCCTTGATGGTCAATTTAGTCAAATGCGTGATACACTCCTTGCCATGA GAACCATAATTCTTCATCTGAGTAGCTGCATTTCATGAATGCAGTCTCTGCTTATTTTTACATGATGCATATATGCTTTT TGATGGAAATAATCTTAGGTTTGGATGAAATAACGATCTTTATCGTTAGACATCCATATTGCATTCATTGGTGAATGGTT TTAGGCCCCACACGATCTTTACTTCTTGTTTAGTTCACCTTTGGCTAGAAATTGACAACCCAAGTAGGGACGTCCATTCT TGGTCTCATCAAATGCAAACATGTGGGGTTTAATGATGTCAAGTAAACCCTTATGCAGTGTTGTACAACCTTGGATGAAA TCATGAAAAGGATAGAAAATAAAATTTCATGTGATAACAGCAACCTGTATGGTTTCTAATTTGGTCCGGCACCAAAACTG ATATCTACTGTTATTTTTCCATTGATGTTTATGCTGAAAGCCTTTTTTGGGGTTGATTTCATTTTTTATTTATTTTATTC ACATTTTTCTTGGCCTTTATTTTTTTAGGGTGCGAATTTCTATCCTTGCTCAAATTCTTACTTCTATTCTTGATGTCCTT TAGTTTTGTGGTAGGGTTTTATCTGCAGTCTCATCATCAAACCGTTTTTAATGTAGACAATTAAATCTAAATTTTCTTGC TTCTCATGACTTGTTTTATGTGTTCCTTTGATAGTGAGTTTGTGATATCTACTGTTGGTCAAAAAAATTATTGCAGGGAA TTGTAACAGCTCCAATATTGTTTGCGATGGAGGAGTTCCCTCAGTTGCGGACAGTTGTTGATGAGGGCTTTGACAACCCG GAAAATGTTGATATTGTAAGTTAATATGTGCTTCGCTGTATGTTTTTTGTCCCACTAAACAATGTTAACACAATTTCCTG TCAACAAAGTAAACCTTACTCAGAAGTTTCTTGTCCCACTAAACAATGTTAACACAATTTCCTGTCAACAAAGTAAACAA GAATAAATGTGAATCTTATCATAGGGGCATCAACATGACCATGGGTGAAAATGTTTATCTATTTCTATTCTTGGTCAAAT TATATGTACTGCTATTTTCGCAACTGTAGGCTCTGGAGTATCTTGGAAAGAGCAGAGGTATTCAAAGGACAAGGGAGCTA GCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGATTCTTTACCTGAAAGTGATGATGGGGAAGTAAGATTATCAAG GAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAAGAACGAAATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0405700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGTTATGAGAAGCTTAGCCTTTTCAAAGGGCCTGCCAGCATTGCATAGTAGTAGATATCAAATCCATGATCAAAG CAGCTCCATTTCTGAAGAAGAACTTGATCCATTTTCACTGGTTGCTGATGAACTGTCTTTTATTGCCAACAACTTGCGAG CAATGGTAATTGCTGAGGTTCCTAAGCTTGCCTCAGGTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTT CGTCCCACGGTTTTATTGTTAATGTCAACAGCATTAAATCTACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAGG TACTTTTACAGCTGATCTACGCTCAAGACAGCAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCTAGCCTTCTTC ACGATGATGTTTTAGATGATGCAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTAATGGGCAACAAGTTGGCAGTG TTAGCTGGAGATTTTTTGCTTTCAAGGGCTTGTGTTGCGCTGGCTTCTTTGAAAAACACTGAGGTTGTATCTTTGTTGGC AAAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGAGTACTACATCAGATCAAAGGTGTAGTATGGAATATT ATATGCAAAAGACATACTACAAGACTGCATCATTGATTTCCAATAGTTGCAAGGCAATAGCCATCCTTGCTGGCCAAACA GCTGACGTTGCAATGCTTGCTTTTGACTATGGAAAAAATCTGGGATTGGCGTTTCAATTGATAGATGATGTTCTTGACTT CACAGGCACCTCTGCTTCCCTCGGAAAGGGTTCTTTGTCAGACATTCGCCATGGAATTGTAACAGCTCCAATATTGTTTG CGATGGAGGAGTTCCCTCAGTTGCGGACAGTTGTTGATGAGGGCTTTGACAACCCGGAAAATGTTGATATTGCTCTGGAG TATCTTGGAAAGAGCAGAGGTATTCAAAGGACAAGGGAGCTAGCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGA TTCTTTACCTGAAAGTGATGATGGGGAAGTAAGATTATCAAGGAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAA GAACGAAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0405700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQVMRSLAFSKGLPALHSSRYQIHDQSSSISEEELDPFSLVADELSFIANNLRAMVIAEVPKLASGAEYFFKMGVEGKRF RPTVLLLMSTALNLPIPKPPPSNDLGGTFTADLRSRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAV LAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQT ADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRTVVDEGFDNPENVDIALE YLGKSRGIQRTRELAIKHADLAAAAIDSLPESDDGEVRLSRRALVDLTQRVITRTK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.600.10
28 376 349 1.4E-132
IPR008949
PANTHER
PTHR12001
31 376 346 6.4E-197 –
PANTHER
PTHR12001:SF74
31 376 346 6.4E-197 –
SUPERFAMILY
SSF48576
34 375 342 5.92E-80
IPR008949
CDD
cd00685
58 374 317 6.61324E-81 –
Pfam
PF00348
69 320 252 8.4E-68
IPR000092
SFLD
SFLDS00005
75 363 289 7.2E-37 –
ProSitePatterns
PS00723
132 146 15 -
IPR033749
ProSitePatterns
PS00444
254 266 13 -
IPR033749

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0405700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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