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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405700 |
| Transcript ID | LotjaGi2g1v0405700.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90237348..90242158) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAATTGCTGAGGTATGAGACTGTTCTTTATTTTCTTCTAATACATGTATGCTTGGAAGAAGTAAAAAATTTAGGCT TAATTACAGTGTTGAAGTCGGGTCTATTTCATGGTGAAATTTGGGTATATATGGCAGGTTCCTAAGCTTGCCTCAGGTGC TGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGTCCCACGGTAAGAATATTTCTAATCATAAGCTGTCCTT TAAAATACTCCCCTAATTTTTTCTAGCATAGCTTAAGGATTCATATAACTTGGTTTGCCTAGTAAAATTTGAGTCCTAAT CTGCGCACTTCGGTTTATGCTGATTTTTCTCCTTGCTTATTTAGTTCTAGTTTCTACCCATGCAATTAACTCCCATAGTT TTAGTGGTAAAATGTATAATTTTGAGTGCATCTAATATCTTCAATGCTTTCATGTGCGAGATATGGGTTAATGGATGGTT ATTTATGCAGGTTTTATTGTTAATGTCAACAGCATTAAATCTACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAG GTACTTTTACAGCTGATCTACGCTCAAGACAGCAACGCATAGCTGAAATAACAGAGATGATTCATGTTAGTTCTTTAGAA AAATTCCTTTTGTTAAGTAAATAATGCTTTCATAATAATGTTGATTATCTTAAGAAGAATAAATACTGATTTATTTTTCT TGTCGGACACTCAATTATACTGTTTCTTATGTTTATACCTTGGTTACGAATACTTCTTCAAATATCTTAACACATAAAGT GCAGATTCAAATGTGTGAAAGGGGATTCTCAAAATACATGCAATTTTCTTGTTTATACTGTTTCTGCCATCTTCCATGCT TTCGTTTATGAGTTTGCTTTTGTTGTTTCTTTTCTAGCTATGTTGTCAATGACTCTTGTATGTTACTGTTTTCTTGTTTA ATTGGTTGTACCGGTTCCTCTTTGTCATCCTTTCTTGAACATGACCCACCATTATTCAATCTTGGACTTGTTTGGTATCC AGCTATCGATCTATGTGTTCTTTGCCTCATGATTGAATTATGAAATTATTAAGAAATGTAAGATGTACCGTAAATCAGAA CTTACTATGTTCATTAGCTGGTAGTTCGAGTTGGAAGACCGCGCTTGTACTTGTCATAAGACAGAAGAAAGCAGTGAATT GTGTTTATGATCTCCTTCTGATACTTTTTTTATGGCTGTTTTAAGGGAATATCCATTCCTGTCAGGCTTCGAGATTTGAC AACTTTGTTGCACTTTCTAACCTCTTCGTCTCGGTGTTTTCAATTTGGTTTTCCTAATACACCACTTTTTTGTTGGTTCC TCTTTTTCCTCTACAAAAATTCATTAAAAGAATTACTTTTTATTAGCTATCCGGTACTGCTGTATTTTGGAGGGTGATTT TACGAAGTAATTCTAAGTTCCTTTGCTGAGTCATAGACATCTTCCTAATTTTTTCCTCCATTCTTGTTATATTATTATCT TATCTTACCAATTATATTAAGATCTGTAAATTTTGTTGGTCCCCAGGACCATCATTTATTAGGTATGGCATGTGAGAACA AAAATGGGAAGATAACTGTGACAATAAAAGCTTGCTTATGAGAAAAAATAACTGCAATCTTATCAAATTCACTGAGCTGC TAGTTCTTGTAGTATAAGATTGTTTTTTGGGCTGATGTAGTATTATTATGCATTATTTAGGCTCCATCAAGTTCACATTG TCTGTGCATGAAATGAATAGCTACCTCCGACCTGTAATAGTGACAAAATCGTTTCAAAGCTCATACATTTGGACCAAGCA ACAATGCCACCGCAATATATTTTTGTCCTTTAAATGGTGTAGGAGCATCACTGGGTCTGTTCATTGCTTTACCTTTACTC TCTAAAGATTTCTAAAACTTTGCATTCAAGTAATATATTAACTATCTCTTGCGTTTGTTCCCTTCTATAAGTTGATGAAT TTAAGCATTTTATGAACTTTTCTCTATGAAGGTAGCTGTCTTTTGCCACTATTTTCTGAAAGAACTGGTTGTTTTAAATC ATTGTTTAGGTTGAAAGTAGACAAAGTACCCGGTAATATTGAAACACCTTTTATGGTGCAAAATTTTACTCAGCCTTGTG CTCCTTTCCATCTTTATCCCCTACCAGCGAGAAAATAGGAAAATATTAATTTAATCAAACTAACTGGGTTATAATTTTGC CATAGGTGGCTAGCCTTCTTCACGATGATGTTTTAGATGATGCAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTA ATGGGCAACAAGGTATATATCAACTTGTGTTTGTTTTTCCTGCATTTTTTAAAAATATTTTTGTGATGTTTTTTGTCGTG GATGTAGCTTGCCTGAGGTGGTTGCTTTTTTCTATATTCTTTTGCAGTTGGCAGTGTTAGCTGGAGATTTTTTGCTTTCA AGGGCTTGTGTTGCGCTGGCTTCTTTGAAAAACACTGAGGTAAGGTAAATGTGCGAGATTTTGTATATGTAATATTCTGA AGATGTATCTAGTTTCCTTGATGATGAAATAATTATGCACCTTGAGCATTTTATTTGCCTAAATACTGCATTTCTATAGG TTGTATCTTTGTTGGCAAAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGAGTACTACATCAGATCAAAGG TGTAGGTATGCTTTGTGTTTGTGTCACACGTGCATCTATGTTCTATGTACATAAAAATTTATCTTTAGTTTACATAATTT GTATTACTAATTTACTATAAGTGATTGATGGGTTCTTGATGAAATTCTTTGTTTATTCCGTATCTATATAATTAGTAGTT AATTGCGAAAGTTCATTTAATTTTCTCAAGCACAAAACACATAATTGTAAGAAAGTCTTAAGAATGCGTTGAATCCTTAG AGATATATAGGGTACTTTAAGGTATCTTTGATTTCTAACAAATGTTTATATTTTCAGTATGGAATATTATATGCAAAAGA CATACTACAAGACTGCATCATTGATTTCCAATAGTTGCAAGGCAATAGCCATCCTTGCTGGCCAAACAGCTGACGTTGCA ATGCTTGCTTTTGACTATGGAAAAAATCTGGTTTGTATTAGATTTTAAGTATAATGAGGCACTTTCGTTGTAAATAATAT GCATAAAAACTGTGAATCTTTGCACAACAAGAATAAATGAAAGTAAGCCTCAAAGACGTATCTTGTTATATACATGCCTG TTTTTGAAATTTTCTGAATGGCATAATTAAATTCCCCCCTCCTTTTTTCCCAGGGATTGGCGTTTCAATTGATAGATGAT GTTCTTGACTTCACAGGCACCTCTGCTTCCCTCGGAAAGGGTTCTTTGTCAGACATTCGCCATGTAATTTCATAATTTCT TGTTTTTCGAAATTCCACCAATCTTGAGTTTGACTTTTCTATGTAATTCAAATTATCTGATGAAAGCCTATGAATCCTTG ATGGTCAATTTAGTCAAATGCGTGATACACTCCTTGCCATGAGAACCATAATTCTTCATCTGAGTAGCTGCATTTCATGA ATGCAGTCTCTGCTTATTTTTACATGATGCATATATGCTTTTTGATGGAAATAATCTTAGGTTTGGATGAAATAACGATC TTTATCGTTAGACATCCATATTGCATTCATTGGTGAATGGTTTTAGGCCCCACACGATCTTTACTTCTTGTTTAGTTCAC CTTTGGCTAGAAATTGACAACCCAAGTAGGGACGTCCATTCTTGGTCTCATCAAATGCAAACATGTGGGGTTTAATGATG TCAAGTAAACCCTTATGCAGTGTTGTACAACCTTGGATGAAATCATGAAAAGGATAGAAAATAAAATTTCATGTGATAAC AGCAACCTGTATGGTTTCTAATTTGGTCCGGCACCAAAACTGATATCTACTGTTATTTTTCCATTGATGTTTATGCTGAA AGCCTTTTTTGGGGTTGATTTCATTTTTTATTTATTTTATTCACATTTTTCTTGGCCTTTATTTTTTTAGGGTGCGAATT TCTATCCTTGCTCAAATTCTTACTTCTATTCTTGATGTCCTTTAGTTTTGTGGTAGGGTTTTATCTGCAGTCTCATCATC AAACCGTTTTTAATGTAGACAATTAAATCTAAATTTTCTTGCTTCTCATGACTTGTTTTATGTGTTCCTTTGATAGTGAG TTTGTGATATCTACTGTTGGTCAAAAAAATTATTGCAGGGAATTGTAACAGCTCCAATATTGTTTGCGATGGAGGAGTTC CCTCAGTTGCGGACAGTTGTTGATGAGGGCTTTGACAACCCGGAAAATGTTGATATTGTAAGTTAATATGTGCTTCGCTG TATGTTTTTTGTCCCACTAAACAATGTTAACACAATTTCCTGTCAACAAAGTAAACCTTACTCAGAAGTTTCTTGTCCCA CTAAACAATGTTAACACAATTTCCTGTCAACAAAGTAAACAAGAATAAATGTGAATCTTATCATAGGGGCATCAACATGA CCATGGGTGAAAATGTTTATCTATTTCTATTCTTGGTCAAATTATATGTACTGCTATTTTCGCAACTGTAGGCTCTGGAG TATCTTGGAAAGAGCAGAGGTATTCAAAGGACAAGGGAGCTAGCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGA TTCTTTACCTGAAAGTGATGATGGGGAAGTAAGATTATCAAGGAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAA GAACGAAATGA
CDS sequence (LotjaGi2g1v0405700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAATTGCTGAGGTTCCTAAGCTTGCCTCAGGTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCG TCCCACGGTTTTATTGTTAATGTCAACAGCATTAAATCTACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAGGTA CTTTTACAGCTGATCTACGCTCAAGACAGCAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCTAGCCTTCTTCAC GATGATGTTTTAGATGATGCAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTAATGGGCAACAAGTTGGCAGTGTT AGCTGGAGATTTTTTGCTTTCAAGGGCTTGTGTTGCGCTGGCTTCTTTGAAAAACACTGAGGTTGTATCTTTGTTGGCAA AAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGAGTACTACATCAGATCAAAGGTGTAGTATGGAATATTAT ATGCAAAAGACATACTACAAGACTGCATCATTGATTTCCAATAGTTGCAAGGCAATAGCCATCCTTGCTGGCCAAACAGC TGACGTTGCAATGCTTGCTTTTGACTATGGAAAAAATCTGGGATTGGCGTTTCAATTGATAGATGATGTTCTTGACTTCA CAGGCACCTCTGCTTCCCTCGGAAAGGGTTCTTTGTCAGACATTCGCCATGGAATTGTAACAGCTCCAATATTGTTTGCG ATGGAGGAGTTCCCTCAGTTGCGGACAGTTGTTGATGAGGGCTTTGACAACCCGGAAAATGTTGATATTGCTCTGGAGTA TCTTGGAAAGAGCAGAGGTATTCAAAGGACAAGGGAGCTAGCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGATT CTTTACCTGAAAGTGATGATGGGGAAGTAAGATTATCAAGGAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAAGA ACGAAATGA
Protein sequence (LotjaGi2g1v0405700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIAEVPKLASGAEYFFKMGVEGKRFRPTVLLLMSTALNLPIPKPPPSNDLGGTFTADLRSRQQRIAEITEMIHVASLLH DDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMSTTSDQRCSMEYY MQKTYYKTASLISNSCKAIAILAGQTADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFA MEEFPQLRTVVDEGFDNPENVDIALEYLGKSRGIQRTRELAIKHADLAAAAIDSLPESDDGEVRLSRRALVDLTQRVITR TK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 322 | 322 | 3.1E-184 | – | |
| PANTHER | 1 | 322 | 322 | 3.1E-184 | – | |
| Gene3D | 1 | 322 | 322 | 1.9E-124 | ||
| CDD | 4 | 320 | 317 | 3.2924E-81 | – | |
| SUPERFAMILY | 7 | 321 | 315 | 1.18E-77 | ||
| Pfam | 15 | 266 | 252 | 5.1E-68 | ||
| SFLD | 21 | 309 | 289 | 4.1E-37 | – | |
| ProSitePatterns | 78 | 92 | 15 | - | ||
| ProSitePatterns | 200 | 212 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi2g1v0405700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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