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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0408600 |
| Transcript ID | LotjaGi2g1v0408600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ and TAZ domain protein; TAIR: AT5G67480.1 BTB and TAZ domain protein 4; Swiss-Prot: sp|Q9FJX5|BT4_ARATH BTB/POZ and TAZ domain-containing protein 4; TrEMBL-Plants: tr|I3TAA7|I3TAA7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0408600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90574087..90576436) extracted from Lotus japonicus Gifu genome v1.2.
ACTGACAGCAATTGTTGTAAACCACCCCGGAGCGGTGAGAAACGCATTCCGGCACCACCGCCTTTGCCCCGTTTTACAGC AATTGGTTGTCCTTGTGACTGCCTGGTGACGAATCAGTATTCAGCACAGAAAGGGTCAGCAACAAGAGATTTGTGGGAGC GTCTCTTTGATGCAGGTTACAGAGCAGATGTTTGCATTAATACTGAAAATGGTGGCATTGTTTATGCTCACTCTAACATT CTTGTAAGTTCATTCACCTTGCTTGGTGTTGTACCATAGATACTTATTCTGGTTTTGCAAGCACATGTATTACTGGTAAA GCTACATCAATTTTACTGCAATGAATTATGCTCATGTTAACATGTTTGAATAATTGGATCAACGTTGTGACAATTGATTT TGGTAAAATTGTTCATCCTATAATTGAATTGAAGGTGACGGGATTTATGTTTGGTTACATGGGAAAAGTAATTCTTGTAG GGTGATGTTGTGACTGCAAGAATTAGATTTTGTAACTTCATTCCAATATTAATTTTACAGTTAGAATCAATTGCAAGAAA AAAAAAATTCAAATCCCTGGAAATTGATTTTGAGATTTTCACTGATGTAGTAGGCAAATATATTCAGTTTTTCAGGTTCA TGTTACTGCTTTAACTATCCAGATACTAACTAGAGTACTAGATCTGCTCAGTCAAATAAGAGCTGGATATATTGGATTCT GAGTCCATGGAGGCATGGAGTGCTTTGTTTGTATGATCTGCATCATCATGGAATGCAGATGTTTTGTCATTAATCATTAA TACTAGACAGACTGATCTGTATGTTATCTTGAATTCAATTTTTGTGGATACCACTCACTTTGTCCTATATGAACAGGGCA TGACTTCTCCCGTTATCAGAGGCATGCTGAAGCAAGCAAAACGTCACAATCGATGGCGATCAATCTCAATCTTTGGTGTT CCTCATGACGTGGTTCGAGTTTTCATTCGATTCCTGTACTCTTCTCGGTATGTTTGATCCCTCAATTTACCTCAAAATTC TCAGAATGTTTGTGTAGAAATCATTAGCTTAACCTATGCTGTGGGGTAAGAAGGTCTGATAATATTCTCTTGAAATTTTG TTTGCTCAAAGCAATTGCGTGATTGATTTGTTCGACTCCTTCAATTTGTTTCGTTTCTGATACTCACGTTGCACAATATA ATTGGCAATGGAGTTCCTCGCAAATTATACAGCAAAACTTGTTCTGCATTACTCATATTGAACATAAATGTGCTGAAAAT TTTGCTTTGCCCTTCTTTCATAGTTTGGAGAAAGAAGAAATGGAGGAATACATCCTACATTTGCTGGTGCTGTCACATGT ATACATGGTCCCAGACTTGAAGCGTGAGTGCGAACAGAAGCTAGAATTGGGATTACTCACTATAGATAATTTAGTTGATG TATTTCAACTTGCATTACTGTGTGATGCTCCACGGCTCAGCCTCATTTGTCACCGTAAGATACTAAAGAACTTCAAAGCT GTTTCTGTGTCCGAAGGATGGAAAGCAATGAAGCAGAGCCACCCTATTCTAGAAAAGGAAATTCTGGAGTCAGTGATTGA CGAGGAAAATGTAAGGCTGTCTTTCCCCCCTCATTTTAGTTTTAGCATGTTTAGATAATCTTCTCTTTTTCTCAGATCAA CTTCAACGCACAGATTACTTATAGGAGCTTCTCTTAGAATTGATTTTATCTTTAGACATCATTGCATAATGTGTTCCCAA ACATGCTATCTTACACTATGTGTAACTTGATTAGTGCATTGCCTAATTGCCTTTCGATCAACTGATTGCTCAGAGCAAAA AGGAGAGGATAAGAAAAATCAATGAAAGAGAGATATATCTGCAACTATACGATGCGATGGAAGCGCTTGTTCACATATGT AGAGATGGTTGTCGAACTATTGGCCCTCATGATAAGGACTTCAAAGCAAACCAACCATGTAGGTATGCCGCCTGCAAGGC ATTGGAGTTGCTTGTTCGACATTTTGCTGGCTGCAAGTTGAGAGTCCCAGGGGGTTGTGTTCATTGCAAGAGGATGTGGC AACTATTGGAGCTACACTCTAGACTATGTGCTGATCCTGATTTTTGTAGAGTTCCGTTATGCAGGTAATAATATTGTTTA TGGTCTAAGATTTTGCTTAGTGCAGTTCAATCATACAACTTAATTGTTACAAAAACCTTGTCATTTCAGGAACTTTAAGC AGCGAGTGTCAAAACAAAGCAAGAAAGAAGAAATCAGATGGAAAATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATT GGGATAGCACCATGCTTTAGGCCACAATGA
CDS sequence (LotjaGi2g1v0408600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCTCCCGTTATCAGAGGCATGCTGAAGCAAGCAAAACGTCACAATCGATGGCGATCAATCTCAATCTTTGGTGT TCCTCATGACGTGGTTCGAGTTTTCATTCGATTCCTGTACTCTTCTCGTTTGGAGAAAGAAGAAATGGAGGAATACATCC TACATTTGCTGGTGCTGTCACATGTATACATGGTCCCAGACTTGAAGCGTGAGTGCGAACAGAAGCTAGAATTGGGATTA CTCACTATAGATAATTTAGTTGATGTATTTCAACTTGCATTACTGTGTGATGCTCCACGGCTCAGCCTCATTTGTCACCG TAAGATACTAAAGAACTTCAAAGCTGTTTCTGTGTCCGAAGGATGGAAAGCAATGAAGCAGAGCCACCCTATTCTAGAAA AGGAAATTCTGGAGTCAGTGATTGACGAGGAAAATAGCAAAAAGGAGAGGATAAGAAAAATCAATGAAAGAGAGATATAT CTGCAACTATACGATGCGATGGAAGCGCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAGGA CTTCAAAGCAAACCAACCATGTAGGTATGCCGCCTGCAAGGCATTGGAGTTGCTTGTTCGACATTTTGCTGGCTGCAAGT TGAGAGTCCCAGGGGGTTGTGTTCATTGCAAGAGGATGTGGCAACTATTGGAGCTACACTCTAGACTATGTGCTGATCCT GATTTTTGTAGAGTTCCGTTATGCAGGAACTTTAAGCAGCGAGTGTCAAAACAAAGCAAGAAAGAAGAAATCAGATGGAA AATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCACCATGCTTTAGGCCACAATGA
Protein sequence (LotjaGi2g1v0408600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSPVIRGMLKQAKRHNRWRSISIFGVPHDVVRVFIRFLYSSRLEKEEMEEYILHLLVLSHVYMVPDLKRECEQKLELGL LTIDNLVDVFQLALLCDAPRLSLICHRKILKNFKAVSVSEGWKAMKQSHPILEKEILESVIDEENSKKERIRKINEREIY LQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYAACKALELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADP DFCRVPLCRNFKQRVSKQSKKEEIRWKILVEKILRTRGIGIAPCFRPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 1.8E-171 | – | |
| PANTHER | 1 | 287 | 287 | 1.8E-171 | – | |
| CDD | 1 | 80 | 80 | 3.28937E-40 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Gene3D | 1 | 75 | 75 | 2.7E-9 | – | |
| SUPERFAMILY | 2 | 76 | 75 | 9.42E-8 | ||
| Pfam | 2 | 76 | 75 | 5.1E-7 | ||
| Phobius | 21 | 40 | 20 | - | – | |
| Phobius | 41 | 51 | 11 | - | – | |
| Phobius | 52 | 68 | 17 | - | – | |
| Phobius | 69 | 288 | 220 | - | – | |
| Gene3D | 81 | 155 | 75 | 2.3E-12 | – | |
| CDD | 82 | 142 | 61 | 6.50664E-5 | – | |
| Coils | 137 | 157 | 21 | - | – | |
| Gene3D | 156 | 275 | 120 | 2.4E-21 | ||
| SMART | 157 | 249 | 93 | 1.6E-37 | ||
| SUPERFAMILY | 157 | 257 | 101 | 7.32E-23 | ||
| Pfam | 165 | 248 | 84 | 3.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Molecular function | Histone acetyltransferase activity | Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0408600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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