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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0412100 |
| Transcript ID | LotjaGi2g1v0412100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT3G49750.1 receptor like protein 44; Swiss-Prot: sp|Q9LSI9|BIR2_ARATH Inactive LRR receptor-like serine/threonine-protein kinase BIR2; TrEMBL-Plants: tr|A0A0B2PZ36|A0A0B2PZ36_GLYSO Probably inactive leucine-rich repeat receptor-like protein kinase; Found in the gene: LotjaGi2g1v0412100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90884879..90887861) extracted from Lotus japonicus Gifu genome v1.2.
AAGCGTAAAATTTCGCCAAGTTGGATACAACGTGGATCCGCTACCTGCTCGGCAGAAATCCAAACACACATTTATCACTA CTCTTTTGTATGAATCGTACCGCCTCCAATCCAAACACATCCACCACTTCTATCCCAACCAAACACCCCCTAAGAAAAAC ACTAAAAAAATGAAAATAAAAAGTTTGTTTAAAATAACTACAACAATAATATAATAATATCTGTATATAAAACAAACCCA CTAGCTACACAGTCACAGGACCTAAAGAGTGAAGACCATTTTTCAACTATCTCCCTTTCCCTTCTCTCTCACCCCCTTTA CTCATTCCAATTCACTTTGGCATTTCATCAAACAGTACAACTACAATAATCCAACACCAACATCTATCTCTCGCTTTCTC AACTTTCACGTTTCATTTTCGAAGATCCTTTTCCCCTCAAGAAACTGAGAAGAATCAGAATCAGAATCGAAGAAAACAGA GAATCATCAAGAATTGGATTTCCTTCAGCAATAGATGGATGTAGGGAGGGTGGTGCTAGTGTTGTTGTTGCTGTGTGTGA TGTGGATTCAGATTCAGCTTTGTTCATCAGATCCAAGCGACGAGGCGTGCCTCACGCAACTCAGCAAATCGTTACAGGAC CCAAACAGATTGAACTGGAAGCAAGAGAATTTCGCCAAACCCTGCAACGATTCAACCTCGAATCTCCAAGGAGCAATCTG CAACAATGGCCGAATCTACAAACTCTCCCTCAACAACCTCGCGCTTCACGGCACGATTTCCCCTTTCCTCGCCAACTGCA CAAACCTCCAAGCTCTTGACCTCTCCTCCAACTTCCTCACCGGACCCATCCCGCCGGACCTCCAATCTCTGGTCAACCTC GCCGTGCTCAACCTCTCCGCTAACCGCCTCGAAGGGGAGATTCCGCCGCAGCTCACAATGTGCGCGTATCTCAACATCAT CGACCTCCATCAAAACCTTCTCACCGGGCCTATTCCTCAGCAATTGGGTCTCCTTGTTCGTCTCTCCGCCTTCGACGTCT CCAACAACCGCCTCGCCGGTCCGATCCCGTCGTCGCTCACCAACCGGAGCGGCAACCTGCCCAGATTCAACGCTAGCTCG TTCGTCGGGAATAAGGATCTCTACGGCTACCCTCTGCCGCCGCTCCGGAGTAAAGGGCTGTCGATCTTAGCCATTGTTGG GATCGGATTGGGAAGTGGACTCGCTAGCTTGGTTCTCAGCTTCACTGGGGTTTGTATATGGTTGAAAGTTACAGACAGGA AGATGGCACAAGAAGAAGGCAAAATCAGTCACCTTATGCCTGATTATTGATATCCCTTATTCCCTTAACCTTCAAATTCA ACTGATTATCGATAGTGTTATTAAACTCGGCTCGGCCATCGACTCGGTTAGATATTCAATATTTCATATCCAAGGTATCT ATCTCTTTGATTGAACTTGCAATTGATTGATGATGGTTCAGCTGAAACCAAAAAAAAAAAAAAAGAGACAGTAACGGTAC CAGGTACTTTTTTTTTGTTTGATGATAAAAGTGAGGTGTGGGCTACCCTTTTTCTTTGTTCTTATGGGTTGTTCAGATAA TTGTCTTTTATTGATCACGGGCATATATTTATATATTTTGATTATTTTTTATCCTTTTTTTCCCATAATTATTTGACAGT TTTAATTTTCACCCTTCTATTATTATTGTAGTTGTTGTTATTTAATGAATGAAAATACATTAGTACTAGCAGTGTGTAAA TCAAAGGAATCTTGCATCTAATTTTCTTGTTCTGGCATACAGTACATGGATATGGATTGCAATGCAATTTCCTAAATTTT CGTTATGTATGATTTGGTGGGTTGGCTTTGGTTGGCACTTGGCAGGATGGTAGGGTAGGTTAGATACTGTGGCAATGCTA GGTGAAGCGCAGCACTACGCAGTTCAACTGTAAACTTGTCTCAGCACTATTTTTTTAGCATATTTTTCCATGGAAGTGGT GTAAACTTATTTGAAAAACTGTGATAATTATCTTAACATATAGTAGCTTTTTTGCTTGCTTACTATTAAACCGACTATTT GTATTTTAGCCTGTAAACGGGAACAGCTGGTGCTTTTTAATTTGAATCAAGAAAAAGTGAGGTTTTTCAACACATCCTCG GAGGTCTAGTGCTTTGGTAGGTTGAGCTGATGGGGGACACCAACACTAGTACACAGCTACTTTGATCGAGACTTCAATTC TTTTTTCTCATGATCACTCAGTACAACTGAGTACAATTCAGTCGATTAAAGCCTAGAGATCTATTATATTAATAATAATA GAAACCATTTTTTATTTAAATTATTCTAATACGACTAGTATTGTGTTAAGATTTCAATAGATTCTGATTATAAAATTTTC TCCGTACAGAAATTACTCTCAACTTGTCACATGTCGTAGGCATACTTTCATTGGGATACATATTAAAATCATAAAATGTG AGGAGAGATGTGAAAAATCAGATAATTAAGTGAGTATAAACGCATAAATCAACTAGCACTTAGTTATTTAACTTAATCAG ATGACTCGAGTTTAAATGCATGTAAATGTGGCTGCAGCCTGCAAGCACCAACTATGGATTCCAACCTCAACCTTGCTGGC TCGTGCTTTAGGATGCAGGCTATCTATGCTATGCTATCCTCCATAGCTTAGGATCATTAATATTCATAATGAAGTAGTTA TATTTTAATATATAACAGTACCTTGATGAATGATGATGTTGGAGAAAGGGTGAACCAAATTTTAAATTTACAGGCATAAA GTTCTGAGGGGTTAGCGTGGATCTTGTGCTTCCCATAATTAAGGCCAGTGGGCTTCCCATAATGTTCTTCTGGCCTTTAT TTTTCTCTCTATAAGCTAAGTGGCCCTATGCTGGTTTCAGTTGCTTTGTACCTTACTGTTATATGGAATCTTTTCATATG CTTCTCTTTATGACTAACAGACA
CDS sequence (LotjaGi2g1v0412100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTAGGGAGGGTGGTGCTAGTGTTGTTGTTGCTGTGTGTGATGTGGATTCAGATTCAGCTTTGTTCATCAGATCC AAGCGACGAGGCGTGCCTCACGCAACTCAGCAAATCGTTACAGGACCCAAACAGATTGAACTGGAAGCAAGAGAATTTCG CCAAACCCTGCAACGATTCAACCTCGAATCTCCAAGGAGCAATCTGCAACAATGGCCGAATCTACAAACTCTCCCTCAAC AACCTCGCGCTTCACGGCACGATTTCCCCTTTCCTCGCCAACTGCACAAACCTCCAAGCTCTTGACCTCTCCTCCAACTT CCTCACCGGACCCATCCCGCCGGACCTCCAATCTCTGGTCAACCTCGCCGTGCTCAACCTCTCCGCTAACCGCCTCGAAG GGGAGATTCCGCCGCAGCTCACAATGTGCGCGTATCTCAACATCATCGACCTCCATCAAAACCTTCTCACCGGGCCTATT CCTCAGCAATTGGGTCTCCTTGTTCGTCTCTCCGCCTTCGACGTCTCCAACAACCGCCTCGCCGGTCCGATCCCGTCGTC GCTCACCAACCGGAGCGGCAACCTGCCCAGATTCAACGCTAGCTCGTTCGTCGGGAATAAGGATCTCTACGGCTACCCTC TGCCGCCGCTCCGGAGTAAAGGGCTGTCGATCTTAGCCATTGTTGGGATCGGATTGGGAAGTGGACTCGCTAGCTTGGTT CTCAGCTTCACTGGGGTTTGTATATGGTTGAAAGTTACAGACAGGAAGATGGCACAAGAAGAAGGCAAAATCAGTCACCT TATGCCTGATTATTGA
Protein sequence (LotjaGi2g1v0412100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVGRVVLVLLLLCVMWIQIQLCSSDPSDEACLTQLSKSLQDPNRLNWKQENFAKPCNDSTSNLQGAICNNGRIYKLSLN NLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNLAVLNLSANRLEGEIPPQLTMCAYLNIIDLHQNLLTGPI PQQLGLLVRLSAFDVSNNRLAGPIPSSLTNRSGNLPRFNASSFVGNKDLYGYPLPPLRSKGLSILAIVGIGLGSGLASLV LSFTGVCIWLKVTDRKMAQEEGKISHLMPDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 7 | 270 | 264 | 4.6E-111 | – | |
| PANTHER | 7 | 270 | 264 | 4.6E-111 | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| SUPERFAMILY | 23 | 217 | 195 | 3.91E-30 | – | |
| Phobius | 26 | 223 | 198 | - | – | |
| Gene3D | 28 | 145 | 118 | 9.1E-27 | ||
| Pfam | 97 | 119 | 23 | 0.006 | ||
| PRINTS | 98 | 111 | 14 | 3.9E-5 | – | |
| PRINTS | 119 | 132 | 14 | 3.9E-5 | – | |
| Gene3D | 146 | 216 | 71 | 1.2E-13 | ||
| Phobius | 224 | 250 | 27 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 251 | 271 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0412100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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