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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0412900 |
| Transcript ID | LotjaGi2g1v0412900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal L24; TAIR: AT2G36620.1 ribosomal protein L24; Swiss-Prot: sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24; TrEMBL-Plants: tr|I3SVC9|I3SVC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0412900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90983161..90985042) extracted from Lotus japonicus Gifu genome v1.2.
CGCGGTGGCATTTTCGTGGTTTTCTAATACCCAAAGGTTATTTATCGAGGGTTTTGAAGGTATAGATATTAGCGCATATT GGATTCTAGGGTTTCATCCCGGAAGAAGAATCAGGAGCATCAGCAGCTGCAGGCAACATGGTTCTCAAGTGAGTTTCCTC CGATTTCAGAATTCTTGCTTTCCTTCAAAATCAATCAAATCATCATTATCATTTTCATGTTTCTGTGGATTCAAATTTGA TTTTCACGTAATGCTGTTTGTTCAAACCAACCAATTGCGCTTTGATTTTCATTTAATGTCGTTTCGCCCTTCTCATGGAA CAATTGATTTTAGATCATGTAATTATATTTTTTGAAATTATTGTTAATGTGTTGATGCATTTTGCTTGAAATGATGAATT GTATTTTTTGAAATTACTGTGTTATTGAGTGTGTTGATGTATTTTGATTGAAATGAGGAATTGTATTTTCTAATGATGTT ATCTGCAATCAGCGTGTCTTCTCACTGGTATATTGTCTTTGATGTGTTAGGACCGAGCTTTGCCGGTTCAGTGGGGCGAA GATCTACCCTGGAAGAGGCATAAGATTTATTCGAAGCGATTCTCAGGTGACACAAATGTGGCATGCATTGAATTATAGTG TTGGCTCATGAAATGTAATGTAATGTTTGCCATGGTGTTTAATGGTTGCTTATGTGTATGTGTGTTTCTGTTTGTTGTTT GATCAGGTCTTCCTGTTTGTCAACTCGAAATGCAAAAGGTATTTCCACAACAGGTTGAAGCCGTCGAAGCTCACCTGGAC TGCCATGTTTAGGAAGCAACACAAGAAGGTGACGGCTTGATTGAAATTATTTATGTGTGACATAGGCAGTGTTAACGGTT GCTTGTGGTTTTGTTTATATTTTGATTGTACATGTACTGATTTTTTATTATTGTACTTGTGATGTGCAGGACATTGCCCA AGAGGCTGCGAGGAAGAAGCGTCGCTCTACCAAAAAGCCTTACTCCAGGTCAATTGTTGGTGCTACATTGGAAGTTATTC AGAAAAGGAGAACTGAAAAGCCTGAGGTTCGAGATGCTGCTAGAGAAGCCGCTCTTCGGTGTGTTTTCCTTTTTATTTCT TCCTTGTTCTGTATTCTTTATTCATCTGTTATCAAGAACATATATAACGTTGTCATTGCTTACATGAATCATCTCTGTTT TTAAGTGGTTAGCATTCTCACAAAATAAAGTTGCATTGTTTTTCAGGGAAATTAAAGAGAGAGTCAAGAAAACAAAGGAT GAGAAGAGGGCAAAGAAGGCAGAAGTTCAGACAAAGGCACAAAAGTCACAAGGCAAAGGCGGCAAGGTTGCTGCACCCAA GGGTCCTAAGCTTGGTGGTGGAGGCGGGAAGCGCTGAGTTCCTAGTTTTGTGGCAGCACTTAAACAGAGCTGTCTTGAAA GTTTTGTACTGATATTATTTCTGCTTGATCAATCTTTTATTTTACCCTTTATTTTATTTGGAGCTTAGAGTACTAGTTAT TCATGGATTTTGCCTGCGGAGCCAATTTAAAGTTTATACAAGCTCGCTTATATGCTTCTTGCCATTGTATTATCAAGTTG TCATTCTATGGTGTGCTCTGATAATGTCTCAAGTGCAGTGGGTTTTAACGAAATGGATCATAACACAACATGTGATAAAC TGAAATTGATAGGAGAAAGATTGGATGAGCGTAATAGCACTTAGGGTGTCATGTGGTTGTCCAAATGTCACTTAACATGT CAAATTAGCGGTGTCATGTGGTCCAAATGTCACTTAACATGTCAAATTAGCTATTATGTTTACCTTCACTAACATTTGGG TAGTCAAGATTAATGTCATTGGCGTTTTTCACTTGAGCCCCC
CDS sequence (LotjaGi2g1v0412900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCAAGACCGAGCTTTGCCGGTTCAGTGGGGCGAAGATCTACCCTGGAAGAGGCATAAGATTTATTCGAAGCGA TTCTCAGGTCTTCCTGTTTGTCAACTCGAAATGCAAAAGGTATTTCCACAACAGGTTGAAGCCGTCGAAGCTCACCTGGA CTGCCATGTTTAGGAAGCAACACAAGAAGGACATTGCCCAAGAGGCTGCGAGGAAGAAGCGTCGCTCTACCAAAAAGCCT TACTCCAGGTCAATTGTTGGTGCTACATTGGAAGTTATTCAGAAAAGGAGAACTGAAAAGCCTGAGGTTCGAGATGCTGC TAGAGAAGCCGCTCTTCGGGAAATTAAAGAGAGAGTCAAGAAAACAAAGGATGAGAAGAGGGCAAAGAAGGCAGAAGTTC AGACAAAGGCACAAAAGTCACAAGGCAAAGGCGGCAAGGTTGCTGCACCCAAGGGTCCTAAGCTTGGTGGTGGAGGCGGG AAGCGCTGA
Protein sequence (LotjaGi2g1v0412900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKP YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKGGKVAAPKGPKLGGGGG KR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 64 | 64 | 5.2E-30 | ||
| CDD | 3 | 56 | 54 | 3.24686E-19 | ||
| PANTHER | 3 | 162 | 160 | 8.1E-95 | ||
| PANTHER | 3 | 162 | 160 | 8.1E-95 | – | |
| Pfam | 4 | 67 | 64 | 7.5E-28 | ||
| SUPERFAMILY | 6 | 58 | 53 | 1.01E-16 | – | |
| SMART | 8 | 46 | 39 | 5.3E-4 | ||
| ProSitePatterns | 10 | 27 | 18 | - | ||
| MobiDBLite | 64 | 83 | 20 | - | – | |
| Coils | 112 | 136 | 25 | - | – | |
| MobiDBLite | 117 | 162 | 46 | - | – | |
| MobiDBLite | 117 | 136 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0412900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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