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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0413300 |
| Transcript ID | LotjaGi2g1v0413300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Malate dehydrogenase; TAIR: AT2G22780.1 peroxisomal NAD-malate dehydrogenase 1; Swiss-Prot: sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal; TrEMBL-Plants: tr|A0A1J7GRW6|A0A1J7GRW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0413300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91042284..91046063) extracted from Lotus japonicus Gifu genome v1.2.
AGTATTATGGAGCCAAATTCAGATGCTAATCAGCGAATTGCCATGATCGCTGCTCACCTCAACCCTCCCAATCTCATGGT TCGTTTCGTGATCCCTTGCCTACTCTTGTTTTCTTCTTCGATTAATCCTGTTTCGTTTCTGTTGTGATTGAACAGATGGA GGATGCTTCTTTGAGAACTGCCCATTGTCGCGCCAAAGGTGGAGCTCCGGGATTCAAAGTCGCCATTCTGGGTGCTGCAG GTGGCATAGGTCAACCTCTCGCCATGTTGATGAAGATGAACCCACTCGTTTCGGTTCTCCATCTCTATGATGTCGTCAAC ACCCCTGGTGTCACTTCTGATATCAGTCACATGGACACTGGTGCCGTTGTATGTATTTCCTTCAATCTCAATATGCGAAT TCGTTTTCACTGAAACAAGCAAAACCCAGATACATTTTCTGATTTTTTTACCTGAATCATGTAGAAATTAATAAACTTGC TCAGTGAATTCTTGTGGGTAGGTTTGGTTGACCTTGTATCCACAAATTAGGCCTTATCATGAATCATGTCTAAATGTGGA TTTGTGTGATTGTGTTAATGTTTAGCTCTGTTTGGTTTGCTTAGCCTGCTGAGATGACTAACATTTGGTATTTAGGTTCG AGGATTTTTGGGGCAAAAGCAGCTTGAGGATGCATTGATAGGCATGGACTTGGTGATCATTCCTGCTGGTGTTCCACGCA AACCTGGAATGACAAGAGATGATCTCTTCAATATTAATGCTGGAATTGTTAAGACACTATGTGAAGGGATTGCAAAGTGC TGTCCAAAAGCGATTGTCAACTTGATAAGCAATCCGGTTAACTCCACTGTCCCGATTGCAGCTGAAGTTTTCAAAAGAGC CGGTACATATGATCCCAAGAGACTTTTGGGAGTGACGATGCTTGATGTTGTTAGAGCAAATACGTTTGTGGTATGTGCCA CTATTCTTGAAATTAATAGATGCAGCTCTTTATAGTTAATGGATAATTAGGATGGTGAAGTGAACTTTTCAAGTTAAACT AAAAGAAAATCTCAAATTTGAAATTCCTGTTGTTTCAAACTTTGACTAGCTATGATTATGCTTATTACTTAATTATGACA ACCAATGGTACTGCAATTAAGGAATTAACTCTTGGGTGAGTTGAACTGACTGCTGCATTGTCATAATCTTTTATATTTTT TATGGAGAAAGGCTGAAAGGCATATTAGACGAGGGCATGGGAGGAGTTCATTTTAACTGTACAGCCTTACCTGAAAATGT AGGATCAACCAACAGAGGTAAGGAGGGCGGAATGGGAAAAGGGGTTTCGTGCTGATACTTCAGAGAATAACTGAATGCTG AGCTGGCAGGCATATGAGAATATTAGAGGGGAGGATAGGAAGTATGAGGGCTGACAGATAATGGGTAGGAAATTGTGGAT CCCTTGAAGAATCTTGGCATTTTCTCTCTCTCTTTTCCCGTGCTACAGAGAGTGAGAGCAAGGGACATTTTTTTTAATGG TGATATGAGTAGTAATATCAGTTCAGAATATCGAATTCTGGTTTTGTGAATACATACATCAATAATAGTCATACCTGATT CCAGTTTCTATCACGTCCATTTGAAAATATAGTTTTTGGCTTTTGTAACATAGCTTGTTAAAGCCTGTGTACCATAAAAT AAAAGTGTGCTAGTAGCTCTCTCAGTATTATTTCCCAATGTTGTCTGTTATTAGTTATTACTGTATCAAATTTTGAACTG CACTTCATTAACTTTTCCCTGTCGGGTCTGAACATGCAGGCTGAGGTTCTAGGTATTGATCCAAGGGATGTGGATGTCCC AGTTGTTGGGGGACATGCAGGTGTTACAATTTTACCTCTTCTTTCTCAGGTCTGCACTCTAACTATTTCTCATTCTTAAT TGTTGCTGTGTCTTATTTTGAATTCTTACAAATGTTATACTCTAATTTATTAGCTGACAGAGTCTCCCAAATTTTAGGTT AAACCTCCTTGCTCTTTCACCCCAAAAGAAATTGAGTACTTGACTGATCGCATACAAAACGGTGGAACTGAAGTTGTTGA GGTGAATATTTATATATTTTCTTAGTTTCTGTTTACTTGAATACTAATAACTAATACACCTAAATTCCATTATCACTCTT GTTGTTTACCCTTCAACCATGGAGGTCTTAATAATTAATTTATTAAATGTCACTATGTCAGACTTAAAATAATATCTGGT GAGATAGCAGAGGGGTTGAACTGATCGGCAATCTTGCACTCCTGCCTATTATGGAGTTCAATTCAATGAGTGCATGTTAA TAAATATAGAAGAATCGTGTAATGTGCCAAAATTGTTATGCAGGAAGCTACAAATAGTTGCTTGTGGCATACGGGATTAT GAGTTTCCCAAAAGCTAAACCATATATTCAGTGAATTTGAGTTGGCTTATGCTAAAGATGATTCAAACTTCACATGGAAG CAGATGTAAAATAATTGTGCCCCGATCCTTTATGTTATTTTTTACTTGGTAGTTTGCAATCTCACCAAACCCCTAGTTCA TAAACTTACCTAGACACATGCCTAGGAAATTCTATGAGGAAAGGTTTCCTATATGCAGGGAAACGTAGATTTCAGTAAAA TCTTGAATTTGGGATGGGCCTAACTCAACCCCAAAAGCTTGCTAAAGGGTGAGAATTGTTCTACCTTTTATGAAGATTTA TTTGGTCATATCTTCAGTCAATGTGGGACCGCTCAGCACATCTCTCTCATGCCCAAGACTGGACATATGGAGCATGAAGT TTTCAAAACTGGCGGGTGACCTAGTTATGAAGGGCCCAACAAATGGTACAATCTTAAATTCAGGCCTAGGACTAACCTTC ACTCGTGAGCTAGCTTTTGGGATAGAGTTAGGCTAATAAGTTTTGAAAGTAATCACTAATCTGGCTTAGTAAAATGTGTA TCAGTTAGTACTTTTTGGCAGTAAATTCGAGCTATATATGAATCCTCTATTGCTACGGATTATCTACACGTTGGAATTTT GATTTGGACAATGTTGTAATTTTCTCTAGGCCAAAGCTGGAGCTGGGTCCGCAACACTATCAATGGTTAGTGACTTATTT TTACTTTATATATAATACATGTGATGTGAGGAGAATATGCATGTTTTTGTAGAAGAAATTAATCATGACCATATATGCTA TAGGGTGTGCATAACATTCATGTCATTTTAACTATTTCGGTTCTAGTAAATGTAATCCCGAGTATGTAATAAAGTGCAGG CATATGCTGCTGCTAAATTTGCAGACGCATCCCTTCGCGCTCTAAGAGGAGATGCTGGCATCATTGAATGTGCATATGTT GATTCACAGGTATGCTAAACAGACATCTTAAGGTTGCCATGCTTATTCCCTTGTCATATTTTAGCAGATTGTGATATTAT AGTGTTGATTTTTCTGCTCAAAGTGGGAGCTTGAATAAATGTTTTCTTAAAAACTTACAATGTGTGTCATACATAGGTGA CTGAGCTCCCGTTCTTCGCATCAAAAGTACGACTTGGGCGTGGCGGTGTTGAGGAAATTCTTCCTCTTGGTCCCCTGAAT GATTATGAGAGGTAAGCAGTAATCACAGACATTTTAAAAAAACTGATGTTGTCGTTATTCAGGTGAGACTGAAACAATAG AGTTTATATGCTTGTGTTTTGAAATAGGGAGAGTTTGGAGAAGGCCAAGAAAGAGTTGGCAACAAGCGTGGAGAAGGGCG TTTCTTTCATCAGAAAATGA
CDS sequence (LotjaGi2g1v0413300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCAAATTCAGATGCTAATCAGCGAATTGCCATGATCGCTGCTCACCTCAACCCTCCCAATCTCATGGTTCGTTT CATGGAGGATGCTTCTTTGAGAACTGCCCATTGTCGCGCCAAAGGTGGAGCTCCGGGATTCAAAGTCGCCATTCTGGGTG CTGCAGGTGGCATAGGTCAACCTCTCGCCATGTTGATGAAGATGAACCCACTCGTTTCGGTTCTCCATCTCTATGATGTC GTTCGAGGATTTTTGGGGCAAAAGCAGCTTGAGGATGCATTGATAGGCATGGACTTGGTGATCATTCCTGCTGGTGTTCC ACGCAAACCTGGAATGACAAGAGATGATCTCTTCAATATTAATGCTGGAATTGTTAAGACACTATGTGAAGGGATTGCAA AGTGCTGTCCAAAAGCGATTGTCAACTTGATAAGCAATCCGGTTAACTCCACTGTCCCGATTGCAGCTGAAGTTTTCAAA AGAGCCGGTACATATGATCCCAAGAGACTTTTGGGAGTGACGATGCTTGATGTTGTTAGAGCAAATACGTTTGTGGCTGA GGTTCTAGGTATTGATCCAAGGGATGTGGATGTCCCAGTTGTTGGGGGACATGCAGGTGTTACAATTTTACCTCTTCTTT CTCAGGTTAAACCTCCTTGCTCTTTCACCCCAAAAGAAATTGAGTACTTGACTGATCGCATACAAAACGGTGGAACTGAA GTTGTTGAGGCCAAAGCTGGAGCTGGGTCCGCAACACTATCAATGGCATATGCTGCTGCTAAATTTGCAGACGCATCCCT TCGCGCTCTAAGAGGAGATGCTGGCATCATTGAATGTGCATATGTTGATTCACAGGTGACTGAGCTCCCGTTCTTCGCAT CAAAAGTACGACTTGGGCGTGGCGGTGTTGAGGAAATTCTTCCTCTTGGTCCCCTGAATGATTATGAGAGGGAGAGTTTG GAGAAGGCCAAGAAAGAGTTGGCAACAAGCGTGGAGAAGGGCGTTTCTTTCATCAGAAAATGA
Protein sequence (LotjaGi2g1v0413300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPNSDANQRIAMIAAHLNPPNLMVRFMEDASLRTAHCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV VRGFLGQKQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK RAGTYDPKRLLGVTMLDVVRANTFVAEVLGIDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGTE VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGRGGVEEILPLGPLNDYERESL EKAKKELATSVEKGVSFIRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 4.0E-193 | – | |
| PANTHER | 1 | 340 | 340 | 4.0E-193 | – | |
| Gene3D | 39 | 173 | 135 | 1.4E-54 | – | |
| PIRSF | 46 | 90 | 45 | 2.3E-4 | ||
| SUPERFAMILY | 47 | 172 | 126 | 1.61E-32 | ||
| CDD | 47 | 338 | 292 | 0.0 | – | |
| Pfam | 48 | 82 | 35 | 1.4E-7 | ||
| TIGRFAM | 48 | 339 | 292 | 9.8E-112 | ||
| PIRSF | 81 | 337 | 257 | 1.3E-53 | ||
| Pfam | 88 | 172 | 85 | 3.4E-27 | ||
| ProSitePatterns | 173 | 185 | 13 | - | ||
| SUPERFAMILY | 173 | 338 | 166 | 1.28E-47 | ||
| Gene3D | 174 | 340 | 167 | 7.3E-63 | ||
| Pfam | 174 | 337 | 164 | 1.4E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Biological process | Malate metabolic process | The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Malate dehydrogenase activity | Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | L-malate dehydrogenase activity | Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0413300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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