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LotjaGi2g1v0413300.5

Overview

Field Value
Gene ID LotjaGi2g1v0413300
Transcript ID LotjaGi2g1v0413300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Malate dehydrogenase; TAIR: AT2G22780.1 peroxisomal NAD-malate dehydrogenase 1; Swiss-Prot: sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal; TrEMBL-Plants: tr|A0A1J7GRW6|A0A1J7GRW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0413300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91042623..91046090) extracted from Lotus japonicus Gifu genome v1.2.

ATATCAGTCACATGGACACTGGTGCCGTTGTATGTATTTCCTTCAATCTCAATATGCGAATTCGTTTTCACTGAAACAAG CAAAACCCAGATACATTTTCTGATTTTTTTACCTGAATCATGTAGAAATTAATAAACTTGCTCAGTGAATTCTTGTGGGT AGGTTTGGTTGACCTTGTATCCACAAATTAGGCCTTATCATGAATCATGTCTAAATGTGGATTTGTGTGATTGTGTTAAT GTTTAGCTCTGTTTGGTTTGCTTAGCCTGCTGAGATGACTAACATTTGGTATTTAGGTTCGAGGATTTTTGGGGCAAAAG CAGCTTGAGGATGCATTGATAGGCATGGACTTGGTGATCATTCCTGCTGGTGTTCCACGCAAACCTGGAATGACAAGAGA TGATCTCTTCAATATTAATGCTGGAATTGTTAAGACACTATGTGAAGGGATTGCAAAGTGCTGTCCAAAAGCGATTGTCA ACTTGATAAGCAATCCGGTTAACTCCACTGTCCCGATTGCAGCTGAAGTTTTCAAAAGAGCCGGTACATATGATCCCAAG AGACTTTTGGGAGTGACGATGCTTGATGTTGTTAGAGCAAATACGTTTGTGGTATGTGCCACTATTCTTGAAATTAATAG ATGCAGCTCTTTATAGTTAATGGATAATTAGGATGGTGAAGTGAACTTTTCAAGTTAAACTAAAAGAAAATCTCAAATTT GAAATTCCTGTTGTTTCAAACTTTGACTAGCTATGATTATGCTTATTACTTAATTATGACAACCAATGGTACTGCAATTA AGGAATTAACTCTTGGGTGAGTTGAACTGACTGCTGCATTGTCATAATCTTTTATATTTTTTATGGAGAAAGGCTGAAAG GCATATTAGACGAGGGCATGGGAGGAGTTCATTTTAACTGTACAGCCTTACCTGAAAATGTAGGATCAACCAACAGAGGT AAGGAGGGCGGAATGGGAAAAGGGGTTTCGTGCTGATACTTCAGAGAATAACTGAATGCTGAGCTGGCAGGCATATGAGA ATATTAGAGGGGAGGATAGGAAGTATGAGGGCTGACAGATAATGGGTAGGAAATTGTGGATCCCTTGAAGAATCTTGGCA TTTTCTCTCTCTCTTTTCCCGTGCTACAGAGAGTGAGAGCAAGGGACATTTTTTTTAATGGTGATATGAGTAGTAATATC AGTTCAGAATATCGAATTCTGGTTTTGTGAATACATACATCAATAATAGTCATACCTGATTCCAGTTTCTATCACGTCCA TTTGAAAATATAGTTTTTGGCTTTTGTAACATAGCTTGTTAAAGCCTGTGTACCATAAAATAAAAGTGTGCTAGTAGCTC TCTCAGTATTATTTCCCAATGTTGTCTGTTATTAGTTATTACTGTATCAAATTTTGAACTGCACTTCATTAACTTTTCCC TGTCGGGTCTGAACATGCAGGCTGAGGTTCTAGGTATTGATCCAAGGGATGTGGATGTCCCAGTTGTTGGGGGACATGCA GGTGTTACAATTTTACCTCTTCTTTCTCAGGTCTGCACTCTAACTATTTCTCATTCTTAATTGTTGCTGTGTCTTATTTT GAATTCTTACAAATGTTATACTCTAATTTATTAGCTGACAGAGTCTCCCAAATTTTAGGTTAAACCTCCTTGCTCTTTCA CCCCAAAAGAAATTGAGTACTTGACTGATCGCATACAAAACGGTGGAACTGAAGTTGTTGAGGTGAATATTTATATATTT TCTTAGTTTCTGTTTACTTGAATACTAATAACTAATACACCTAAATTCCATTATCACTCTTGTTGTTTACCCTTCAACCA TGGAGGTCTTAATAATTAATTTATTAAATGTCACTATGTCAGACTTAAAATAATATCTGGTGAGATAGCAGAGGGGTTGA ACTGATCGGCAATCTTGCACTCCTGCCTATTATGGAGTTCAATTCAATGAGTGCATGTTAATAAATATAGAAGAATCGTG TAATGTGCCAAAATTGTTATGCAGGAAGCTACAAATAGTTGCTTGTGGCATACGGGATTATGAGTTTCCCAAAAGCTAAA CCATATATTCAGTGAATTTGAGTTGGCTTATGCTAAAGATGATTCAAACTTCACATGGAAGCAGATGTAAAATAATTGTG CCCCGATCCTTTATGTTATTTTTTACTTGGTAGTTTGCAATCTCACCAAACCCCTAGTTCATAAACTTACCTAGACACAT GCCTAGGAAATTCTATGAGGAAAGGTTTCCTATATGCAGGGAAACGTAGATTTCAGTAAAATCTTGAATTTGGGATGGGC CTAACTCAACCCCAAAAGCTTGCTAAAGGGTGAGAATTGTTCTACCTTTTATGAAGATTTATTTGGTCATATCTTCAGTC AATGTGGGACCGCTCAGCACATCTCTCTCATGCCCAAGACTGGACATATGGAGCATGAAGTTTTCAAAACTGGCGGGTGA CCTAGTTATGAAGGGCCCAACAAATGGTACAATCTTAAATTCAGGCCTAGGACTAACCTTCACTCGTGAGCTAGCTTTTG GGATAGAGTTAGGCTAATAAGTTTTGAAAGTAATCACTAATCTGGCTTAGTAAAATGTGTATCAGTTAGTACTTTTTGGC AGTAAATTCGAGCTATATATGAATCCTCTATTGCTACGGATTATCTACACGTTGGAATTTTGATTTGGACAATGTTGTAA TTTTCTCTAGGCCAAAGCTGGAGCTGGGTCCGCAACACTATCAATGGTTAGTGACTTATTTTTACTTTATATATAATACA TGTGATGTGAGGAGAATATGCATGTTTTTGTAGAAGAAATTAATCATGACCATATATGCTATAGGGTGTGCATAACATTC ATGTCATTTTAACTATTTCGGTTCTAGTAAATGTAATCCCGAGTATGTAATAAAGTGCAGGCATATGCTGCTGCTAAATT TGCAGACGCATCCCTTCGCGCTCTAAGAGGAGATGCTGGCATCATTGAATGTGCATATGTTGATTCACAGGTATGCTAAA CAGACATCTTAAGGTTGCCATGCTTATTCCCTTGTCATATTTTAGCAGATTGTGATATTATAGTGTTGATTTTTCTGCTC AAAGTGGGAGCTTGAATAAATGTTTTCTTAAAAACTTACAATGTGTGTCATACATAGGTGACTGAGCTCCCGTTCTTCGC ATCAAAAGTACGACTTGGGCGTGGCGGTGTTGAGGAAATTCTTCCTCTTGGTCCCCTGAATGATTATGAGAGGTAAGCAG TAATCACAGACATTTTAAAAAAACTGATGTTGTCGTTATTCAGGTGAGACTGAAACAATAGAGTTTATATGCTTGTGTTT TGAAATAGGGAGAGTTTGGAGAAGGCCAAGAAAGAGTTGGCAACAAGCGTGGAGAAGGGCGTTTCTTTCATCAGAAAATG ACAAGTTTGATGATCCGGAAGATAATAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0413300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTGGTGATCATTCCTGCTGGTGTTCCACGCAAACCTGGAATGACAAGAGATGATCTCTTCAATATTAATGCTGG AATTGTTAAGACACTATGTGAAGGGATTGCAAAGTGCTGTCCAAAAGCGATTGTCAACTTGATAAGCAATCCGGTTAACT CCACTGTCCCGATTGCAGCTGAAGTTTTCAAAAGAGCCGGTACATATGATCCCAAGAGACTTTTGGGAGTGACGATGCTT GATGTTGTTAGAGCAAATACGTTTGTGGCTGAGGTTCTAGGTATTGATCCAAGGGATGTGGATGTCCCAGTTGTTGGGGG ACATGCAGGTGTTACAATTTTACCTCTTCTTTCTCAGGTTAAACCTCCTTGCTCTTTCACCCCAAAAGAAATTGAGTACT TGACTGATCGCATACAAAACGGTGGAACTGAAGTTGTTGAGGCCAAAGCTGGAGCTGGGTCCGCAACACTATCAATGGCA TATGCTGCTGCTAAATTTGCAGACGCATCCCTTCGCGCTCTAAGAGGAGATGCTGGCATCATTGAATGTGCATATGTTGA TTCACAGGTGACTGAGCTCCCGTTCTTCGCATCAAAAGTACGACTTGGGCGTGGCGGTGTTGAGGAAATTCTTCCTCTTG GTCCCCTGAATGATTATGAGAGGGAGAGTTTGGAGAAGGCCAAGAAAGAGTTGGCAACAAGCGTGGAGAAGGGCGTTTCT TTCATCAGAAAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0413300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKRAGTYDPKRLLGVTML DVVRANTFVAEVLGIDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMA YAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGRGGVEEILPLGPLNDYERESLEKAKKELATSVEKGVS FIRK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.720
1 77 77 2.7E-36 –
PANTHER
PTHR11540
1 244 244 1.4E-154 –
PANTHER
PTHR11540:SF50
1 244 244 1.4E-154 –
CDD
cd01337
1 242 242 8.48681E-153 –
Pfam
PF00056
1 76 76 1.5E-25
IPR001236
TIGRFAM
TIGR01772
2 243 242 3.4E-99
IPR010097
SUPERFAMILY
SSF51735
2 76 75 1.25E-20
IPR036291
SUPERFAMILY
SSF56327
77 242 166 5.1E-48
IPR015955
ProSitePatterns
PS00068
77 89 13 -
IPR001252
Gene3D
G3DSA:3.90.110.10
78 244 167 2.9E-63
IPR015955
Pfam
PF02866
78 241 164 5.6E-50
IPR022383

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0006108
Biological process Malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016615
Molecular function Malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0030060
Molecular function L-malate dehydrogenase activity Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0413300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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