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LotjaGi2g1v0418900.1

Overview

Field Value
Gene ID LotjaGi2g1v0418900
Transcript ID LotjaGi2g1v0418900.1
Lotus japonicus genome version Gifu v1.2
Description DNA repair endonuclease UVH1-like protein; TAIR: AT5G41150.1 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1; TrEMBL-Plants: tr|K7LMX6|K7LMX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91727196..91732499) extracted from Lotus japonicus Gifu genome v1.2.

GAGTTGAGCGAGTGAGAGAGTTTTCGCGGTAAAACTTGCAACGACGACCATCGCAAACCCTCGTTCATCGATCGATGGTT CAATTCCAGGAGCACATAATCACAGAGCTTCTAGAAGACTCCAATGGCGGTCTCGTCATCCTCTCTTCCGGCCTCTCTCT CTCGAAACTCATCTCCTCTCTCCTCCTTCTCCACTCCTCTTCTCAAGGCACACTCCTCCTTCTCTCTCCTTCTTCCACCA CTCTCAAATCCAAAATCAACTTCCACCTCAAAACCCTAAACCCCCAATTCTACCAAATCCCCTCCGAAATCACCGCCGAT CTCCCCGCCCACCACCGCCACTCCCTCTACACCTCCGGCAACGCCTTCTTCATCACCGCTAGGATCCTCATCGTCGACCT CTTAACCAACAGACTCCCTACCTCCAAAATCGCCGGGATCGTCCTCCTCAACGCGCATTCCATCTCCGAGACTTCCACTG AAGCGTTCATTGTTAGAATCTTCCGGTCACTCAATCGCGATGCGTACGTCCGTGCTTTCTCTGATAAGCCTCACGCGATG GTATCAGGTTTCGCGAAGGCGGAGAGGACCATGAAGTGTTTGTTCCTGCGGAGGCTGCATCTCTGGCCGAGGTTTCAGGT GTATGTGTCGCAGGAATTGGAGAGGGACCCGCCGGATGTGGTGGATATAAGGGTGCCGATGACTAGGTATATGGTGGGGA TTCAGAAGGCTATTATCGAGGTCATGGACGCGTGCTTGAAGGAGATGAGGAAGACCAATAAGGTTGACATTGAGGATTTG ACGGTGGAGAATGGCTTGTTCAAGTCATTTGATGAGATTGTGAGGAGGCAGTTGGATCCAATTTGGCATACTTTGGGGAA AAAGACTAAGCAGCTTGTTTCGGACCTTAAGACCTTGAGGAAATTGTTGGATTATCTAGTCAGGTCAGATTCTTAATGTA TTTATTTAGTCTTTCTCTGCATCAATCATTCATATTTAAGCTTGGTTTTAGAAAGTGGAGCACTTCATTGTGTGACCTCA ATAATCTGTTCATTGTTGGATATACTTTCAAGTTTCAATTTATTCAGCTGAAGAATATAGTGATTATAAGAGGGGCTGAT TGTGTGGCTGGCTTATTCCTCTTGTAGGTATGATGCAGTAACTTACTTGAAATATTTGGATACACTGAGAGTGTCGGAGA GTTTTCGATCTGTTTGGATATTTGCAGAGGCGAGCTATAAGATATTTGACTATGCAAAGAAACGTGTTTTCCACCTTGTG AGGTCAGACGGTACGAAATTAAATGGGCAGAGTAAGGGTGGAAAAAACAAGAAGAAAAAAGTTAAAGGGGATAACAAAGA CACTGAAGAAGGTAAGAACTTTATTACTATGTTTTCTTTGTGCTATATAGTGGTATAGGTCATGGCTTTTTGGTACTGCT TTATTATATGAAGGTTAGCTTTTAAAATTAAACAAGTAAAAGGAAATGAGATGTGCCATCCCAAGTTAATCGATGACATT TTCTTTCAGCTTAAATTTTAATTTAGATGCTTCGTGTAACAGTTGACGGTACTTCATCAGCTAGTTCAAATGCTGGCTTA GTTTTGGAGGAAGTATTGGAAGAAGCGCCGAAATGGAAGGTCTTACGTGTGAGTCAGTGAGTTCCAATTCTAGAAAGCCT TTGAGCTATGTTCATTTTATTTTGTTTCATATTTGAGACAGACATTAATTTGACATTGTTTCTAACATTTTTTTAGCTTA TTTGTTGTTTCGAAATCGGATGGCCTGAAATGGGTTAGGGGAAAATAGTTTAATTTGATGAATGTTGGATATTTTAGGAT GAATCTTGATCTAATTATATCATTATAGGAGGTTCTGGAGGAGGTAGAAGAAGAAAGACAAAAGCAAGGTACATTGAGAG AAGAAGTATTGGCTGAAGGTGAAGACACCGACAATGGCATTGTATTAGTGGCATGCAAAGATGAAATGTCGTGCTTGCAG CTTGAAGAATGCATCACCAACAGTCCCAAAAAGGTTTTCTCCCCTACACTTGTCCTATGATATGTCATCTTATAAAGTGT GATCTGGGTGGCTCTATTGCTACCTTGTTCTTTACTTTGTTTAGCTGGTGACAGTAAGAAGTTTCATGTTCTACTTTGTT GGTTAATAGTCATCATGACAAGAAGAAACTGAGTTTTATACCCTGTATATTATGTGTTATTTGTGAAGGTCATGCGTGAA GAATGGGCGAAGTACTTGCTAAACAAAGTACAGCTGCGTGACATAGTGCATAAGAAAAAGAAGCCAAAGGATCCTAAAGG TTTTGGTATTCTTGATGGAGTTACTCCGATTGCACCTGCTCAGAAAATGGAAACCAGCACCATTAATAAGCAGGAGCATG ATGCACTTCTGGCTGCGGCATCAGAACTAAAAAAGCGTGTCGAAAATGTTCATGTTGTTGAAGATACTCTTCAGCCTGAT TTTAGTGGACAGGTTCGCTCAAAAGGAAAAAGAAAATTGGGGAATAGAAATAGCCCAATCATTGTTGATGGCTTGGGAGC TCAGACTGATAATAAAGACGCATCAACAAGTGAGAAAACTGGGATGTCTGTGGACAACATGGTTCTTCGAAGGCATACTA ATCCTGATTCGGCATCAGGAAGTGGGAAGCCACTACCACCAGTACATTTTTATGCCCTAGAAAGTGACCAGCCTGTTTTG GACATATTAAAGCCCTCTATAATCATTGTTTACCATCCAGACATGGCCTTTGTTCGGGAAATTGAAGTTTACAAAGCTGA GAATCCCTCAAAAAGGTTGAAGGTATATTTTATTTTCTATGAAGATTCCACTGAGGTTCAGAAGTTTGAGGCAAGTATAC GTAGAGAGAATGGAGCATTTGAATCTTTGATCAGGCAAAAATCTATGATGATGATTCCAGTTGACCAGGTTTGTTTTACT TTTTTTTCTTCCCCTCTTGTTTTTCCTTCTTTTTGGTTGCTGGTTGGGTCCTTTGTTCTGGATGTGGTTGCCTTCAGTAA AGCAAAGAGGGAGTGTGGCACTGCAAGTTATCAAATAATTGATTTCTGATTTCATTTTCCTCTTTTTCCTCTCCTTTTTG ACGGGTGCATTATTTGCCTTCTGTTTTTCAGGGTGGGCATTGTTTAGGACTGAATTCTACTTTAGAGGCAGATTTAAATA CTCCTCAGAACTCAATAACCAGAAAAGCGGGTGGGAGAAAGGAGGTTGATAAAGACATGCAGGTTTGTGATATTTTCTGT GTGTGGTGTATGATCTTTGCCTCATACTTATCAGGGAGTTATAGTTTGTGAATTTCCAAAATTTCAGGTCATTGTGGACA TGCGGGAGTTCATGAGCAGCCTTCCAAATGTTCTTCATCAAAAGGGAATGCGCATAATTCCAGTGACCCTAGAAGTTGGT GACTACATCCTATCACCATTAATTTGTGTGGAAAGAAAAAGTATTCAAGATCTGTTTATGAGCTTCACATCAGGTCGTCT ATACCACCAGGTGGAGACAATGGTGCGATATTATAGAATACCTGTGCTCTTGATTGAGTTTTCACAGGATAAAAGCTTTT CGTTCCAGGTATGCTGATCTGCATACACCTCTGTCTTCTCTGCTGTTAATAAGAAAGCTTGCCAAGTTGCCATTACTATT TTGGTCCAAACTCCAAACTAAACCAATACCAATTTCAGGCCTGGGTATTATGTTAGAATTTTAGTACAATTTGACTGTGC TAATAGAAAGTGTTGTTTGTTACTTTGGCTTTAATAGAGAATTAGTGATTATTCAATCATTGATATATTATTATTTATAT AGTATGACACAGCATAAGGAGTATTAGTCTTGTAGATTAACATTTCCTTTTGTGGGATTGTGAATGACATTGGATCTTTC ATGGATATCTTTTCCAGTCTGCTAGTGATATTGGTGACGATGTGACACCCAATAGCATTATATCGAAGTTGTCATTGCTT GCTCTACACTTTCCCCGGCTACGAATAATCTGGTCTAGAAGTTTGCATGCCACTGCTGAAATATTTGCTTCACTGAAGGC AAATCAAGATGAACCAGATGAGACAAAGGCAATGAGAGTGGGTGTCCCCTCAGAAGAAGGAATTGTGGAAGATGATGTGA GGTAAGTTGCTTTTCATAGTTGAAGACTTGAAGCTTGAACAAAGGATGAAGTGTAATTGTGTTGGTTACTGTTTCATTTT CTGTTCTAAATAATGGTTTGTTGATGTATCACAGGGCTGAAAATTACAACACGTCGGCTGTGGAGTTTCTAAGACGACTT CCAGGTGTGACAGATTCGAACTACAGGGCCATAATGGACGGGTGTACGAGCTTGGCAGAACTTGCACTTCTTCCTCTAGA GAAGCTGGCTGAATTAATGGGTGGTCATAAAGCTGCTCGGACTCTTAGAGAATTTCTCGATGCTAAATATCCAACTTTGT TGTGAGGCTCAATAGGACAATTCATTTGTACAAATGGTACCAACAATTTATTTAAGGTGACTATTAATTTCGATTACGCA TCATTGGGGTTATAAGGGAGGGATTGGTAGAAAACGGGTGATTGAGTTATTAAAATATTTGTATTGCTTCATTCTGTTGC AATTTTGCTGTATGTTGTATTGCTGACTTTAAAAATGTGTATTTTCATCATTTCTCATTTGTTCATTTGTAACTTCAATT CCTTTTGTGTTCATGTCCTAATCTGATGGTTCTATTTTATTGAGAGCAACTTTTTACCGTTTAGTAGATAGGTCTGAGTA CTTGAGAACATGACATATTAGTTCTACATATTTTTGATACAGAACAGAACTGTATATCTGATTGACTTTGATTCCCAGAA AAAGTTGAAAATAAAGAGAGCAAACTTGAATAATATTTTAGACCCTTTTTATTGATAAAAATGCCATCTCTACTCTCCTG AAACAAAATCTTCAAAAAAGCAAAACAGTAGACACTCCATACCCGCAGGAAGAACTCAATCAAGGTGATGCCCAACATAG TTTAGTAAATAGTAATCCTTCCTCGGACCATGTTTGGAGATCCATTTCATTCAATTTTCAACTGCTATAAAAAAGAAAGT TTTCAAGGAAAAATGTGAATTGAACTAGAAGTACTTTAAAATTATTCTTAAAATTTATATAAACACACTCTCACACTTTG TTTGGTAGGATAGAGAGAGATAAAAAAGAGAGAGTAGAGAAGAGAGAAGTTGAGTAGAGAGAAATATGTAAGAAATAATG TACACTCTGTTTGGTAGAGAAGAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0418900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCAATTCCAGGAGCACATAATCACAGAGCTTCTAGAAGACTCCAATGGCGGTCTCGTCATCCTCTCTTCCGGCCT CTCTCTCTCGAAACTCATCTCCTCTCTCCTCCTTCTCCACTCCTCTTCTCAAGGCACACTCCTCCTTCTCTCTCCTTCTT CCACCACTCTCAAATCCAAAATCAACTTCCACCTCAAAACCCTAAACCCCCAATTCTACCAAATCCCCTCCGAAATCACC GCCGATCTCCCCGCCCACCACCGCCACTCCCTCTACACCTCCGGCAACGCCTTCTTCATCACCGCTAGGATCCTCATCGT CGACCTCTTAACCAACAGACTCCCTACCTCCAAAATCGCCGGGATCGTCCTCCTCAACGCGCATTCCATCTCCGAGACTT CCACTGAAGCGTTCATTGTTAGAATCTTCCGGTCACTCAATCGCGATGCGTACGTCCGTGCTTTCTCTGATAAGCCTCAC GCGATGGTATCAGGTTTCGCGAAGGCGGAGAGGACCATGAAGTGTTTGTTCCTGCGGAGGCTGCATCTCTGGCCGAGGTT TCAGGTGTATGTGTCGCAGGAATTGGAGAGGGACCCGCCGGATGTGGTGGATATAAGGGTGCCGATGACTAGGTATATGG TGGGGATTCAGAAGGCTATTATCGAGGTCATGGACGCGTGCTTGAAGGAGATGAGGAAGACCAATAAGGTTGACATTGAG GATTTGACGGTGGAGAATGGCTTGTTCAAGTCATTTGATGAGATTGTGAGGAGGCAGTTGGATCCAATTTGGCATACTTT GGGGAAAAAGACTAAGCAGCTTGTTTCGGACCTTAAGACCTTGAGGAAATTGTTGGATTATCTAGTCAGGTATGATGCAG TAACTTACTTGAAATATTTGGATACACTGAGAGTGTCGGAGAGTTTTCGATCTGTTTGGATATTTGCAGAGGCGAGCTAT AAGATATTTGACTATGCAAAGAAACGTGTTTTCCACCTTGTGAGGTCAGACGGTACGAAATTAAATGGGCAGAGTAAGGG TGGAAAAAACAAGAAGAAAAAAGTTAAAGGGGATAACAAAGACACTGAAGAAGTTGACGGTACTTCATCAGCTAGTTCAA ATGCTGGCTTAGTTTTGGAGGAAGTATTGGAAGAAGCGCCGAAATGGAAGGTCTTACGTGAGGTTCTGGAGGAGGTAGAA GAAGAAAGACAAAAGCAAGGTACATTGAGAGAAGAAGTATTGGCTGAAGGTGAAGACACCGACAATGGCATTGTATTAGT GGCATGCAAAGATGAAATGTCGTGCTTGCAGCTTGAAGAATGCATCACCAACAGTCCCAAAAAGGTCATGCGTGAAGAAT GGGCGAAGTACTTGCTAAACAAAGTACAGCTGCGTGACATAGTGCATAAGAAAAAGAAGCCAAAGGATCCTAAAGGTTTT GGTATTCTTGATGGAGTTACTCCGATTGCACCTGCTCAGAAAATGGAAACCAGCACCATTAATAAGCAGGAGCATGATGC ACTTCTGGCTGCGGCATCAGAACTAAAAAAGCGTGTCGAAAATGTTCATGTTGTTGAAGATACTCTTCAGCCTGATTTTA GTGGACAGGTTCGCTCAAAAGGAAAAAGAAAATTGGGGAATAGAAATAGCCCAATCATTGTTGATGGCTTGGGAGCTCAG ACTGATAATAAAGACGCATCAACAAGTGAGAAAACTGGGATGTCTGTGGACAACATGGTTCTTCGAAGGCATACTAATCC TGATTCGGCATCAGGAAGTGGGAAGCCACTACCACCAGTACATTTTTATGCCCTAGAAAGTGACCAGCCTGTTTTGGACA TATTAAAGCCCTCTATAATCATTGTTTACCATCCAGACATGGCCTTTGTTCGGGAAATTGAAGTTTACAAAGCTGAGAAT CCCTCAAAAAGGTTGAAGGTATATTTTATTTTCTATGAAGATTCCACTGAGGTTCAGAAGTTTGAGGCAAGTATACGTAG AGAGAATGGAGCATTTGAATCTTTGATCAGGCAAAAATCTATGATGATGATTCCAGTTGACCAGGGTGGGCATTGTTTAG GACTGAATTCTACTTTAGAGGCAGATTTAAATACTCCTCAGAACTCAATAACCAGAAAAGCGGGTGGGAGAAAGGAGGTT GATAAAGACATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTTCCAAATGTTCTTCATCAAAAGGGAATGCG CATAATTCCAGTGACCCTAGAAGTTGGTGACTACATCCTATCACCATTAATTTGTGTGGAAAGAAAAAGTATTCAAGATC TGTTTATGAGCTTCACATCAGGTCGTCTATACCACCAGGTGGAGACAATGGTGCGATATTATAGAATACCTGTGCTCTTG ATTGAGTTTTCACAGGATAAAAGCTTTTCGTTCCAGTCTGCTAGTGATATTGGTGACGATGTGACACCCAATAGCATTAT ATCGAAGTTGTCATTGCTTGCTCTACACTTTCCCCGGCTACGAATAATCTGGTCTAGAAGTTTGCATGCCACTGCTGAAA TATTTGCTTCACTGAAGGCAAATCAAGATGAACCAGATGAGACAAAGGCAATGAGAGTGGGTGTCCCCTCAGAAGAAGGA ATTGTGGAAGATGATGTGAGGGCTGAAAATTACAACACGTCGGCTGTGGAGTTTCTAAGACGACTTCCAGGTGTGACAGA TTCGAACTACAGGGCCATAATGGACGGGTGTACGAGCTTGGCAGAACTTGCACTTCTTCCTCTAGAGAAGCTGGCTGAAT TAATGGGTGGTCATAAAGCTGCTCGGACTCTTAGAGAATTTCTCGATGCTAAATATCCAACTTTGTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0418900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVQFQEHIITELLEDSNGGLVILSSGLSLSKLISSLLLLHSSSQGTLLLLSPSSTTLKSKINFHLKTLNPQFYQIPSEIT ADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETSTEAFIVRIFRSLNRDAYVRAFSDKPH AMVSGFAKAERTMKCLFLRRLHLWPRFQVYVSQELERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIE DLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAEASY KIFDYAKKRVFHLVRSDGTKLNGQSKGGKNKKKKVKGDNKDTEEVDGTSSASSNAGLVLEEVLEEAPKWKVLREVLEEVE EERQKQGTLREEVLAEGEDTDNGIVLVACKDEMSCLQLEECITNSPKKVMREEWAKYLLNKVQLRDIVHKKKKPKDPKGF GILDGVTPIAPAQKMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQPDFSGQVRSKGKRKLGNRNSPIIVDGLGAQ TDNKDASTSEKTGMSVDNMVLRRHTNPDSASGSGKPLPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAEN PSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPVDQGGHCLGLNSTLEADLNTPQNSITRKAGGRKEV DKDMQVIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFMSFTSGRLYHQVETMVRYYRIPVLL IEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKAMRVGVPSEEG IVEDDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCTSLAELALLPLEKLAELMGGHKAARTLREFLDAKYPTLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10150
2 954 953 0.0 –
MobiDBLite
mobidb-lite
341 372 32 - –
Coils
Coil
392 416 25 - –
MobiDBLite
mobidb-lite
533 571 39 - –
SUPERFAMILY
SSF52980
722 860 139 2.17E-35
IPR011335
SMART
SM00891
725 805 81 2.1E-24
IPR006166
Gene3D
G3DSA:3.40.50.10130
725 871 147 3.6E-48 –
Pfam
PF02732
728 858 131 1.3E-21
IPR006166
Gene3D
G3DSA:1.10.150.20
883 954 72 6.3E-20 –
SUPERFAMILY
SSF47781
887 951 65 3.19E-12
IPR010994

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0004518
Molecular function Nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0418900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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