Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0421000 |
| Transcript ID | LotjaGi2g1v0421000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT5G47370.1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein; Swiss-Prot: sp|P46601|HAT2_ARATH Homeobox-leucine zipper protein HAT2; TrEMBL-Plants: tr|B7FJ62|B7FJ62_MEDTR Homeobox associated leucine zipper protein; Found in the gene: LotjaGi2g1v0421000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91897586..91900145) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAAGAAGATGAGAGAGAGAAACCAATTAAGAGAGTCGTGTTGTAATTATTTGGGGGGCAAGACCCATGATTCAGAC AATTGGGTTTCCTGCCATAAAGTCATCATCATGCTTCTGCTTCACCACTTCCTTCTATATAAACCCACTCACACACCCTC TCCACTCCGTAATCAGAATCATCCCTTTTCCCCTCACAAAACAAAAAGCTCACTCTCTCTCATTTCTCCCTTTCTTACTC CAAAATTTTCTTTCTCCTCACTTTCTTCAAAACCCAAACCCAAAGGCCTTTAATTACAAATGACTCTTGGAAAGGAAGAC GATTTGGGCTTAAGCCTGAGCCTGAGCTTCCCTCAGAAAAATCCCCCAAACCCAAACCCTCTGCATCTCAATCTCATGTC CTCTTCCTCTGCCTACAATCCTCTCAAACCCACTTGGACTCAGCCTTTCACCTCTTCAGGTGTGTGAAATATTTTTTGCT TTTAGATCTGGTCCAATTTTTTTTATATCTCCCTTTACAGCACACCTAATTGGAATAATTTCAACTTTTCCCCCTTTTTT CAAAATTTGCTGTTTATTCACATTTATAAAAAGTGCCCTAAAATTTTCCCCTCTTTGAAAAAGCTCCCAAAATTGAACAG ATCTCTCAATGATTCCTTCTAATTAAACCCCTGTTTTTGCATGCAGATCGAGATTCGGTAACATGCAGGGTTGGCGAAGG TGGTTTTTCCCTCGGCGGAATCGGAATCGATGTGAATCGGTTACCGTCCGGCGTCGATTGCGAAGAGGAAGCAGGGGTTT CATCTCCGAACAGCACCGTCTCCAGCGTGAGCGGCAAGCGGAGCGAGAGGGAAGGCAATGGCGAAGAGCGTGACGTGGAG GAGAGAGATTGCTCCAGAGGAATCAGTGATGAAGATGATGACGGTGGTGAAACTTCCAGGAAAAAACTCAGACTCTCCAA AGATCAAGCCATTGTTCTTGAAGAAAGCTTCAAAGAACACAACACTCTTAACCCTGTAAGTAGCAGAGTTACTCTGTTTC AAAAAAAAAAATCATCTAGATTTTGTGAAGTTTTTGTTCTCATTTTTTCCGCCATGGATCTGTTTGCAGAAACAAAAGAT GGCACTGGCAAAGCAATTAGGCCTTCGAGCACGACAAGTTGAGGTGTGGTTCCAGAACAGAAGAGCAAGGTTTGTTAATT TTTCTTCACTAATTTGCATTTATGTGTATATGTATCGCTCGACACCATAAAGATAAAGTTTCTGAATCCGTCACTTCGAT AATTACACATATGTATATATGTATATATAAAGTTTCTTGATCCGTCACTTATAATTACACATATGTTTTATGTATATATG TATAACGTACAACATAAAATTTCTGGATCCGTCGTCACTGTTTGTTTGAAGTCGCAGCCAATACATTAACAAAAAGTTAT TAAGCATTTTTGTAAAGGTCACACAAATTTAAATTTACGATTGGTGAAATTGGAATTGATTTCAGGACTAAGCTGAAGCA AACGGAGGTAGATTGTGAGTTTCTGAAACGGTGCTGCGAGAATCTGACGGAGGAGAACAGAAGGTTGCAGAAGGAGGTTC AGGAGCTCAGAGCACTCAAGCTTTCCCCGCAGTTCTACATGCAGATGACCCCACCGACCACTCTCACCATGTGCCCATCC TGCGAGCGCGTGGCAGTTCCGCCCTCCGCGGTTGATCCATCCACGCGCCACCATCATCCCATGTCGGCTCCTAATAATCA CGCGCGTCCCTTCTCGGTTGGCGCGTGGGCCTCCACTGCTCCCATTTCACACAGGCCGTTCGATGTGCTTCGTCCTAGAT CTTGACGTGTACGGATGAGGAAGGAAAAAAAGGGGAAGTGGTTGTGACAGTGTCCCATGAATTGTGCGTTCAAAGTGCGG TCTATGATATGGTGGTTAGGAGAAATGATTTTGTGGGTCTCCAATGTTTTTTGTATGGCCCATTCTAGTTACATTAGGAT ACTTAGTTTTCTTCTCATTATTAATTAATCAGAGACTTGTATAAAGTGCAGTGGTCTAATTAATTAAATATAGTTTCCTA TGTTACCAGATTTCGTACTGTTTGGTAGTCAAATTTTGAGTTTGGACTGATTGGTTTAGAATTGCAAAGAGTGTTCAAAA GATTCTTTGCTGATTTTGAAGGTGCGGGAATTCGTAGGGGACTAATCATGGGGTTTTGGGTGCTAATTTGAGGAAGAAAG AAGGAAATAAACACGTTGTTAAAAGGTGGTTAGTTACTCTAATTGGGCGAACAGCAGTTCAAGAATTTTGGGGTATTATG GGACCCCATAATTGATTATGGTTTCTACTTGTAGAAGGGGAGGGAGAGAACATTATTTCCATGTATTATGGCAGCATTGA CCCATTCCTAATGGTTTGGATCCTCTCATGTGTAAAAAAACTTTAGAGTGTCAAGTGTCATCATCTCACCATTAATTTTA TTTTATTTTATTTTTCATTTATTATCTACACAAAAGTTAATAGTGAGATGGTAAAACTTGACACTCTCAAATTTTTTTAC
CDS sequence (LotjaGi2g1v0421000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTTGGAAAGGAAGACGATTTGGGCTTAAGCCTGAGCCTGAGCTTCCCTCAGAAAAATCCCCCAAACCCAAACCC TCTGCATCTCAATCTCATGTCCTCTTCCTCTGCCTACAATCCTCTCAAACCCACTTGGACTCAGCCTTTCACCTCTTCAG ATCGAGATTCGGTAACATGCAGGGTTGGCGAAGGTGGTTTTTCCCTCGGCGGAATCGGAATCGATGTGAATCGGTTACCG TCCGGCGTCGATTGCGAAGAGGAAGCAGGGGTTTCATCTCCGAACAGCACCGTCTCCAGCGTGAGCGGCAAGCGGAGCGA GAGGGAAGGCAATGGCGAAGAGCGTGACGTGGAGGAGAGAGATTGCTCCAGAGGAATCAGTGATGAAGATGATGACGGTG GTGAAACTTCCAGGAAAAAACTCAGACTCTCCAAAGATCAAGCCATTGTTCTTGAAGAAAGCTTCAAAGAACACAACACT CTTAACCCTAAACAAAAGATGGCACTGGCAAAGCAATTAGGCCTTCGAGCACGACAAGTTGAGGTGTGGTTCCAGAACAG AAGAGCAAGGACTAAGCTGAAGCAAACGGAGGTAGATTGTGAGTTTCTGAAACGGTGCTGCGAGAATCTGACGGAGGAGA ACAGAAGGTTGCAGAAGGAGGTTCAGGAGCTCAGAGCACTCAAGCTTTCCCCGCAGTTCTACATGCAGATGACCCCACCG ACCACTCTCACCATGTGCCCATCCTGCGAGCGCGTGGCAGTTCCGCCCTCCGCGGTTGATCCATCCACGCGCCACCATCA TCCCATGTCGGCTCCTAATAATCACGCGCGTCCCTTCTCGGTTGGCGCGTGGGCCTCCACTGCTCCCATTTCACACAGGC CGTTCGATGTGCTTCGTCCTAGATCTTGA
Protein sequence (LotjaGi2g1v0421000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLGKEDDLGLSLSLSFPQKNPPNPNPLHLNLMSSSSAYNPLKPTWTQPFTSSDRDSVTCRVGEGGFSLGGIGIDVNRLP SGVDCEEEAGVSSPNSTVSSVSGKRSEREGNGEERDVEERDCSRGISDEDDDGGETSRKKLRLSKDQAIVLEESFKEHNT LNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPP TTLTMCPSCERVAVPPSAVDPSTRHHHPMSAPNNHARPFSVGAWASTAPISHRPFDVLRPRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| Pfam | 4 | 109 | 106 | 3.5E-27 | ||
| PANTHER | 6 | 302 | 297 | 1.7E-143 | – | |
| PANTHER | 6 | 302 | 297 | 1.7E-143 | – | |
| MobiDBLite | 85 | 141 | 57 | - | – | |
| MobiDBLite | 90 | 105 | 16 | - | – | |
| MobiDBLite | 106 | 141 | 36 | - | – | |
| SUPERFAMILY | 129 | 195 | 67 | 3.46E-18 | ||
| Gene3D | 132 | 199 | 68 | 6.5E-18 | – | |
| ProSiteProfiles | 134 | 194 | 61 | 17.297 | ||
| SMART | 136 | 198 | 63 | 6.2E-15 | ||
| CDD | 138 | 195 | 58 | 3.39724E-15 | ||
| Pfam | 138 | 192 | 55 | 4.5E-16 | ||
| PRINTS | 165 | 174 | 10 | 1.9E-5 | ||
| ProSitePatterns | 169 | 192 | 24 | - | ||
| PRINTS | 174 | 190 | 17 | 1.9E-5 | ||
| CDD | 187 | 226 | 40 | 0.00323157 | – | |
| Coils | 193 | 230 | 38 | - | – | |
| SMART | 194 | 237 | 44 | 4.2E-27 | ||
| Pfam | 194 | 228 | 35 | 5.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0421000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…