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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0425700 |
Transcript ID | LotjaGi2g1v0425700.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ankyrin repeat-containing protein; TAIR: AT2G31820.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620; TrEMBL-Plants: tr|A0A0S3RIE5|A0A0S3RIE5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92356828..92358542) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAGAAAGAGGACAAGTTTTCTAGAGATTTTGGAGAAACCGATCAGTTCAGTTCAGTTCTCGGGCATCTACAATGGAA AAACAGAAGAGTTTTCGTGGATTCATGGAAAAACAGAAAAGTTTTCGCATTGTGATGGAGAGGCAGCTCAGCTTCATGGG AAGCGAGAGGAAGAAGAGCAAGGAATCACCTGGAAAACGCGGTGACTTACCCATTCACTTAGCAGCTCGGGCTGGGAACT TTAGTAGAGTAAAAGAGATAATTCAAAATTGTTCTAATTATGAGTCAAAGGATTTGTTGGCAAAGCAGAACCTAGAAGGG GAGACCCCTCTTTATGTGGCTTCAGAGAATGGGCATGCCTTGGTTGTTAGCGAGATACTGAAATACTTGGACCTGCAAAC TGCTTCCATAGTGGCCAGAAATGGCTATGATTCATTCATTATTGCCGCAAAGCAGGGTCACCTTGAGGTGCTGAGGGAAC TGCTGCACACCTTTCCCAACTTGGCCATGACCACAGATTTATGTAATTCAACTGCGTTACACACAGCTGCAACACAAGGT CATATTGATGTGGTTAATCTCCTTTTGGAATCAGATTCAAACCTTGCAAAAATTGCCAGGAATAATGGTAAGACTGTCCT TCACTCTGCGGCTAGAATGGGACATTTGGAAGTCGTGAAAGCCTTACTAAAAAAGGACCCAAGCACTGGATTTAGGACTG ATAAGAAAGGTCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTTTGCTAGAATTGGTAAAACCTGAC CCAGCAGTTTTGAATCTAGAGGATAATAAGGGAAATACAGCATTACATGTTGCTGCAAAGAAGGGCCATACTCAGAATGT CCGCTGCTTGTTATCAATGGAGGGTATCAATATCAATGCTACGAACAAGGCTGGAGAGACTCCTCTTGACGTTGCAGAAA AATTTGGAAATCCAGAACTTGTTTCCATATTGAGGGATGCTGGGGCTTCCAATTCCACGGATCAAGGGAAACCTCCTAAT GCATCGAGGCAACTTAAGCAGACTGTCAGTGACATAAAGCATGATGTTCAATCCCAACTCCAACAGACACGTCAGACTGG TATGAGGGTCCAGAAAATTGCAAAGAAGCTGAAAAAACTTCACATTAGCGGCCTGAACAATGCGATAAACTCTGCTACTA TTGTTGCCGTTCTCATTGCAACAGTCGCATTTGCTGCCATCTTCACTGTCCCTGGCCAATATGTTGAAGCGAAAGAACAG GGCTTTTCACTTGGACAAGCAAATATAGCAAACAATGCGGCTTTCCTGATATTTTTTGTGTTTGATAGTTTGGCATTATT CATCTCTCTGGCTGTTGTGGTGGTTCAAACTTCTGTAGTTGTGATTGAGCAGAAGGCAAAGAAGCAGCTTGTGTTCGTCA TTAACAAGCTGATGTGGATGGCTTGCCTTTTCATTTCCATTGCTTTTATTTCTCTCACATACGTAGTTGTGGGATCACAC TCAAGGTGGCTTGCCATATATGCTACAGTGATTGGAAGCTTGATAATGCTCTCTACAATTGGCTCCATGTGCTATTGTGT CATTTTGCACAGGATAGACGAGACTAAACTAAGGGCGGATAGTCGTTCGTTCTCAATGTCTTATGCCCCAGACCAAGAGA TTTTAAACAGCGAAAAGAGGATGTACGCCCTTTAG
CDS sequence (LotjaGi2g1v0425700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAACAGAAGAGTTTTCGTGGATTCATGGAAAAACAGAAAAGTTTTCGCATTGTGATGGAGAGGCAGCTCAGCTT CATGGGAAGCGAGAGGAAGAAGAGCAAGGAATCACCTGGAAAACGCGGTGACTTACCCATTCACTTAGCAGCTCGGGCTG GGAACTTTAGTAGAGTAAAAGAGATAATTCAAAATTGTTCTAATTATGAGTCAAAGGATTTGTTGGCAAAGCAGAACCTA GAAGGGGAGACCCCTCTTTATGTGGCTTCAGAGAATGGGCATGCCTTGGTTGTTAGCGAGATACTGAAATACTTGGACCT GCAAACTGCTTCCATAGTGGCCAGAAATGGCTATGATTCATTCATTATTGCCGCAAAGCAGGGTCACCTTGAGGTGCTGA GGGAACTGCTGCACACCTTTCCCAACTTGGCCATGACCACAGATTTATGTAATTCAACTGCGTTACACACAGCTGCAACA CAAGGTCATATTGATGTGGTTAATCTCCTTTTGGAATCAGATTCAAACCTTGCAAAAATTGCCAGGAATAATGGTAAGAC TGTCCTTCACTCTGCGGCTAGAATGGGACATTTGGAAGTCGTGAAAGCCTTACTAAAAAAGGACCCAAGCACTGGATTTA GGACTGATAAGAAAGGTCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTTTGCTAGAATTGGTAAAA CCTGACCCAGCAGTTTTGAATCTAGAGGATAATAAGGGAAATACAGCATTACATGTTGCTGCAAAGAAGGGCCATACTCA GAATGTCCGCTGCTTGTTATCAATGGAGGGTATCAATATCAATGCTACGAACAAGGCTGGAGAGACTCCTCTTGACGTTG CAGAAAAATTTGGAAATCCAGAACTTGTTTCCATATTGAGGGATGCTGGGGCTTCCAATTCCACGGATCAAGGGAAACCT CCTAATGCATCGAGGCAACTTAAGCAGACTGTCAGTGACATAAAGCATGATGTTCAATCCCAACTCCAACAGACACGTCA GACTGGTATGAGGGTCCAGAAAATTGCAAAGAAGCTGAAAAAACTTCACATTAGCGGCCTGAACAATGCGATAAACTCTG CTACTATTGTTGCCGTTCTCATTGCAACAGTCGCATTTGCTGCCATCTTCACTGTCCCTGGCCAATATGTTGAAGCGAAA GAACAGGGCTTTTCACTTGGACAAGCAAATATAGCAAACAATGCGGCTTTCCTGATATTTTTTGTGTTTGATAGTTTGGC ATTATTCATCTCTCTGGCTGTTGTGGTGGTTCAAACTTCTGTAGTTGTGATTGAGCAGAAGGCAAAGAAGCAGCTTGTGT TCGTCATTAACAAGCTGATGTGGATGGCTTGCCTTTTCATTTCCATTGCTTTTATTTCTCTCACATACGTAGTTGTGGGA TCACACTCAAGGTGGCTTGCCATATATGCTACAGTGATTGGAAGCTTGATAATGCTCTCTACAATTGGCTCCATGTGCTA TTGTGTCATTTTGCACAGGATAGACGAGACTAAACTAAGGGCGGATAGTCGTTCGTTCTCAATGTCTTATGCCCCAGACC AAGAGATTTTAAACAGCGAAAAGAGGATGTACGCCCTTTAG
Protein sequence (LotjaGi2g1v0425700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKQKSFRGFMEKQKSFRIVMERQLSFMGSERKKSKESPGKRGDLPIHLAARAGNFSRVKEIIQNCSNYESKDLLAKQNL EGETPLYVASENGHALVVSEILKYLDLQTASIVARNGYDSFIIAAKQGHLEVLRELLHTFPNLAMTTDLCNSTALHTAAT QGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLKKDPSTGFRTDKKGQTALHMAVKGQNEEILLELVK PDPAVLNLEDNKGNTALHVAAKKGHTQNVRCLLSMEGININATNKAGETPLDVAEKFGNPELVSILRDAGASNSTDQGKP PNASRQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAINSATIVAVLIATVAFAAIFTVPGQYVEAK EQGFSLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYVVVG SHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRIDETKLRADSRSFSMSYAPDQEILNSEKRMYAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 369 | 369 | - | – | |
PANTHER | 2 | 546 | 545 | 0.0 | – | |
PANTHER | 2 | 546 | 545 | 0.0 | – | |
Gene3D | 21 | 138 | 118 | 5.8E-15 | ||
ProSiteProfiles | 42 | 318 | 277 | 57.83 | ||
SMART | 42 | 71 | 30 | 6.1 | ||
ProSiteProfiles | 42 | 74 | 33 | 9.271 | ||
SUPERFAMILY | 46 | 311 | 266 | 1.35E-54 | ||
SMART | 81 | 110 | 30 | 2.0 | ||
Pfam | 101 | 176 | 76 | 7.8E-9 | ||
SMART | 116 | 145 | 30 | 0.97 | ||
Gene3D | 139 | 343 | 205 | 1.5E-44 | ||
ProSiteProfiles | 150 | 182 | 33 | 10.339 | ||
SMART | 150 | 179 | 30 | 0.0026 | ||
Pfam | 183 | 241 | 59 | 9.7E-12 | ||
SMART | 184 | 213 | 30 | 4.7E-4 | ||
ProSiteProfiles | 184 | 216 | 33 | 11.14 | ||
ProSiteProfiles | 218 | 251 | 34 | 8.977 | ||
SMART | 218 | 248 | 31 | 0.83 | ||
Pfam | 242 | 294 | 53 | 2.5E-13 | – | |
ProSiteProfiles | 252 | 285 | 34 | 11.594 | ||
SMART | 252 | 282 | 31 | 0.0011 | ||
ProSiteProfiles | 286 | 318 | 33 | 8.95 | ||
SMART | 286 | 316 | 31 | 6.0 | ||
Pfam | 367 | 478 | 112 | 1.2E-26 | ||
TMHMM | 370 | 392 | 23 | - | – | |
Phobius | 370 | 396 | 27 | - | – | |
Phobius | 397 | 415 | 19 | - | – | |
TMHMM | 415 | 437 | 23 | - | – | |
Phobius | 416 | 438 | 23 | - | – | |
Phobius | 439 | 458 | 20 | - | – | |
TMHMM | 457 | 479 | 23 | - | – | |
Phobius | 459 | 479 | 21 | - | – | |
Phobius | 480 | 484 | 5 | - | – | |
Phobius | 485 | 510 | 26 | - | – | |
TMHMM | 489 | 511 | 23 | - | – | |
Phobius | 511 | 546 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0425700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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