Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0427100
Transcript ID	LotjaGi2g1v0427100.2
Related isoforms 2	LotjaGi2g1v0427100.1 LotjaGi2g1v0427100.3
Lotus japonicus genome version	Gifu v1.2
Description	SNARE-interacting protein KEULE; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp\|Q9C5X3\|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr\|K7K529\|K7K529_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0427100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:92458719..92463267) extracted from Lotus japonicus Gifu genome v1.2.

ATCCTAGCTTCTACTTATTTGTTTTCAAGCCTGTTCTATTGTGCTGTTGTAGGGCATTTGTTTTCTTCAGTTCAATTATT TCCAGAGAATTGGTTATGGATATCAAGAGAGATTCAAGGACGTTGTCTCGATTAGGTGCATTGAGAGAGGTGATGATATT TGATTAAGAAACTAGACTGTACTTAAATTCATACTTGTGGCCGTAACAGTTAGATTCCGTATTCTGATTCCCCCCTCATT TGAATGACATTGTGTAGATGAACTTGGAGTATTTTGCCATAGACAGCCAGGTATGTGGTTGTATACTTTTCACTATCATA TCGATCACCTTTGTTCAATATGAGTAATATTACTTTTCTTCCTTTTTGGTTTTGAATAACTTTGAAAATGATTTTGTAGA AGTCGTCCTTGTGTTAGTTTCAGTTCCACATAGCCATGAGTTTGTCTTGTAATGTATCAGGAATTCAGGATTTTCTTCAG ATAAATTAATTATAATCTATTCATTGTTGAAGAAAACCTTCTCTATACAAACAGAGCTGTGCTTGAACCTTGAATACACT GGATAAACTGCACAAACAAACTTTTTATGGAAATAATTGAAGCACTTTCCAAGAAGTGAAAAGTGAACAACCAGAAAATT TGCTGATTAGAAAGTCCATCTATGCAAATTGGCAATTTTGGTCATTTATGTATATCTTTTACAATACCTTATTAGGCACC TGGTTATTGAGATCTTTCCTCAAGAAATATGTGTCAAATTTCAATTTCACTGGTTAGAGATTCTTTAATAGTTTCTAATC TCATCATCATCCTATTATTTGGTACCTTCATTTTTCAGGTTTGTTTTATTGTCATATTAATGCAGGGTTTCATTACAAAT AATGAAAGAGCTTTAGAAGAGCTATTTGGGGATGAAGAGAATAATTACAAAGGTGTTGCATGCTTGAATTTGATGGCAAG ACGAATTGCTACAGTGTTTGCTTCATTAAGAGTATGTATATTACAAGATACAAAAAGTTGTAGTCAATGCTTTATAATTG TTAAAACACGTGATTGAGAAGTCTTTTGAAGCATGTAAATATCTTTTAGGAATTTCCTTCTGTTCGCTTTCGTGCTGCCA AGTCCCTAGATGCAACCACAATGACTACTTTCCGCGATCTTATTCCTACGAAGCTTGCTGCTGGAGTCTGGGACTGTCTT ATGAAATATAAGAAAACTATACCAAATTTTCCTCAGACAGAGACTTGCGAGTTGCTGATTCTTGACAGATCTATTGATCA GGTTTCATAGCTCATTTTGTTGGCCATTGACTTATATTCTTATGGCAGAGTGTCATGTTGTTTGCAATGAGGATCTTATT CTGATTTTGCAGATTGCCCCTGTAATACATGAATGGACTTATGATGCCATGTGTCACGATTTGCTGAATTTGGAAGGGAA TAAATACGTTCATGAAGTAACTTCTACATTTTCCCTTTCTCTGTGAATTTTGTGTCTGCTTTCTTCTATATAAAGTATAA ACATGAATATACTATATTTTTAAGGTTCCTGGCAAGGACGGCGGTCCACCTGAGAGAAAAGAGGTTCTTTTGGAGGATCA TGATCCTGTATGGCTTGAGCTTCGCCATGCACATATTGCAGATGTATGTGCTTCTTTTACTATCCTAGGCTTTAGCAACA TGAATACCTTTTGATATTGATGACCATGATGCCAGGCTAGTGAACGGCTGCATGAGAAGATGACCAACTTTGTTTCAAAG AACAAAGCTGCACAAATCCAACACGGTTCAAGGTGAGTGCTAATTTTCTCGAGATTTCTAAGCAATGAAATTGTTACATA AGAGGACATTGATGGTGATAGTCTTTATTTGGAATTAAATATTTGGCTATTTTTATAAATATCTTATGTTCTATAAAACT GCATGATTTATTTGACTCACCCCATAGTCCGACTAGCATTCATACCCAGTGTGACATAAAAATTGATACTTCGCCACCTT TGCAAGAGCTAGTTGTCTTGTCTGAGAGAAGACTTCGAATACATTCCCTTCTAGTTTGTACTGAGGGACAAAGAAGTAGA TAAAAAAAAAGCAAAGTATAAATTTTTCTTCCATGTGACAAAATGAATTTGGGTCAAACAATGCAAGTTGTAGAAGTTTG TGTTTTTTCTTAAATTAAGCCTAGTTTTGTGGTTTGATGGAAATGTTTATTTATTCATCTGGTTCCTGCCGTAATAAACA TCACTTAAATTATCAAATTGTATTGTATTTATAGAAATAGTGGTGAAATGTCAACAAGGGACTTACAAAAGATGGTTCAA GCACTTCCACAATACAGTGAACAAATTGGCAAGCTCTCCCTCCATGTAGAGGTTAGTTCTTTTGTCATAAAATCATTATA CAACTTCTTTCCCCTAATATTCATTATATGGTGTGATTTGCACAAATACATTTTCTATCTAATCTTTCGAGGCTATGTTT TTTTTTGCAACTACGGGGAATCATTTATATTTTTAAACGAAGGGGGCCTATTTAAAAAAATCCTGTAAAATAAAGGGACT TGAAGATTAATTTAATCATTAATAATGATAGATGATGGGCTTCTTCATCCAGATTGCAGGAAAAATCAACAGAATCATTA GGGAGTCAGGACTGCGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACAATGAAAGATGTGATCAAA TTTTTTACTACGAATGAAGTAAGGAATTATCCTAGATGAGGAATCAAAGGGTGTTTTTTTTAACTCCTAATCAATGTACA TGTCAAAATTATATAGCTTTTAGTGCAAGATAGAGTTGTGAAATTAGACATGCAACTTTTACACTAACTTTCATATTTAA ACTGCTTAATTCAGGACATATCCCGTGAAAATAAATTGCGCTTGTTAATGATTCTTGCTGCAATTTATCCTGAGAAATTT GAGGGAGAAAAGGGTATGAATTTAATGAAGGTATGGCTTCTTTCTTATTGGCTTGCCCATCATTTTATATTTTAAAGAAT AAATATGCTGCTAATGATGTTATTCCTAACAGCTGTAATGGTGTTATCCAACTTTTATCTTTCAAATGAGTTTTTCAGGT AGCAAAATTGACAGATGAGGATATCTGTGCTGTGGAAAATTTGAGAATGCTTGGGGTACAACCAAATACCAAAAAAAGTT CGACTCGTACTTTTGGTCTGAAGTTTGATATGAATAAGGTAAAAGGTAATTTCTAGTTAAAAATTGTGAGTTTTCAAGGT TACATTATGCCTAAAATGTGTTCTTTTAAGTTGTCAGAAAACGCGTGCTGCAAGGAAAGAACGTCCTGGTGAAGAAGAGA AATGGCAGCTATCGCGCTTTTATCCCATAATAGAGGTGCAAATTATATCAATATGATTTTCTCGCATAAAATATGCATTC GCTTTAAAATTTCAAGGATAGCAGCCATCAGCATAAAGGAAGAGTTTAACGATGTAGTTTGGTTGTCTGAGGGTTCCAAA TATTAGTCGCTGCAAAAATGTTGAATAAGCAAATAGTTTTTGCTACTCTATCGTATAATGTCTTTTCGATTATGTTATGG GTTGCATATTTATAGCCTCAATGCCTCGTGTGATGTGTTGATGATTACTCAGGAACTCATTGAAAAACTCACAAAAAATG AACTGTCAAAGGTAGACTATCCATGTTTGAATGATCCAAGTCCAAGTTTTCACAGCTCCCCCCTTGCTGGGTCTTTAAAT GAAAATCATCATTCGATGAGATCTAGACGCACGCCGACTTGGGCTCGACCACGAGGCTCTGATGATGGATATTCCAGGTT TTCTTGTCTTCATTCCTCAGTGCTAGTCAGTAATTTAATTATTGCTTTTGATCAGATCAGTATATTTCTCTTTCTTTGTC CATTAACTGTTCTTCCCTCTACTTGCTCGCTTATTATTCACCCTTCGCTTATGAGTTGTGTAGACTTGCATTAGCTTGTT ATTATTATTATTATTATTAATATATTTTAGTTTGTAGTAAACCACCATGCGTATGTTGAAATAGCTAATAAAGCCGCAAC TTTCTCATGTGATTTTCATATGTTCCTGCTCTCATACAGCGATTCAGTGCTTAGACATGCATCAAGTGATTTCAAGAAGA TGGGGCGACGAATTTTTGTATTTATCGTCGGTGGAGCAACCAGATCAGAGGTTTGAATCCTTTCTTTGATGAAATGAGAT TATAATATTTAATCCTTGTGTTCTAATTTCTGAACTGAACGTTGTTTTAATCTTCAGCTGAGGGCTTGCCACAAGCTTAG TGGAAAGCTGAGGAGGGAAATTATTCTGGGTTCATCAAGTCTTGATGATCCTGCACAATTTATCACGGTATTGAAGTTTC TACCTTATTCCTTGCCAGATGTGTTCCTTAACTAGGAATTGCAAATATGTCAAATGCAACAACGATCCTTGCTTGACATT TGTCTTCTTTTGCAGAAATTGAAGACGCTAACTACACATGAACTTTCATTAGATGATCTCCAGATATGA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0427100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATCAAGAGAGATTCAAGGACGTTGTCTCGATTAGGTGCATTGAGAGAGATGAACTTGGAGTATTTTGCCATAGA CAGCCAGGGTTTCATTACAAATAATGAAAGAGCTTTAGAAGAGCTATTTGGGGATGAAGAGAATAATTACAAAGGTGTTG CATGCTTGAATTTGATGGCAAGACGAATTGCTACAGTGTTTGCTTCATTAAGAGAATTTCCTTCTGTTCGCTTTCGTGCT GCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGCGATCTTATTCCTACGAAGCTTGCTGCTGGAGTCTGGGACTG TCTTATGAAATATAAGAAAACTATACCAAATTTTCCTCAGACAGAGACTTGCGAGTTGCTGATTCTTGACAGATCTATTG ATCAGATTGCCCCTGTAATACATGAATGGACTTATGATGCCATGTGTCACGATTTGCTGAATTTGGAAGGGAATAAATAC GTTCATGAAGTTCCTGGCAAGGACGGCGGTCCACCTGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTGTATGGCT TGAGCTTCGCCATGCACATATTGCAGATGCTAGTGAACGGCTGCATGAGAAGATGACCAACTTTGTTTCAAAGAACAAAG CTGCACAAATCCAACACGGTTCAAGAAATAGTGGTGAAATGTCAACAAGGGACTTACAAAAGATGGTTCAAGCACTTCCA CAATACAGTGAACAAATTGGCAAGCTCTCCCTCCATGTAGAGATTGCAGGAAAAATCAACAGAATCATTAGGGAGTCAGG ACTGCGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACAATGAAAGATGTGATCAAATTTTTTACTA CGAATGAAGACATATCCCGTGAAAATAAATTGCGCTTGTTAATGATTCTTGCTGCAATTTATCCTGAGAAATTTGAGGGA GAAAAGGGTATGAATTTAATGAAGGTAGCAAAATTGACAGATGAGGATATCTGTGCTGTGGAAAATTTGAGAATGCTTGG GGTACAACCAAATACCAAAAAAAGTTCGACTCGTACTTTTGGTCTGAAGTTTGATATGAATAAGAAAACGCGTGCTGCAA GGAAAGAACGTCCTGGTGAAGAAGAGAAATGGCAGCTATCGCGCTTTTATCCCATAATAGAGGATAGCAGCCATCACCTC AATGCCTCGTGTGATGTGTTGATGATTACTCAGGAACTCATTGAAAAACTCACAAAAAATGAACTGTCAAAGGTAGACTA TCCATGTTTGAATGATCCAAGTCCAAGTTTTCACAGCTCCCCCCTTGCTGGGTCTTTAAATGAAAATCATCATTCGATGA GATCTAGACGCACGCCGACTTGGGCTCGACCACGAGGCTCTGATGATGGATATTCCAGCGATTCAGTGCTTAGACATGCA TCAAGTGATTTCAAGAAGATGGGGCGACGAATTTTTGTATTTATCGTCGGTGGAGCAACCAGATCAGAGCTGAGGGCTTG CCACAAGCTTAGTGGAAAGCTGAGGAGGGAAATTATTCTGGGTTCATCAAGTCTTGATGATCCTGCACAATTTATCACGA AATTGAAGACGCTAACTACACATGAACTTTCATTAGATGATCTCCAGATATGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0427100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIKRDSRTLSRLGALREMNLEYFAIDSQGFITNNERALEELFGDEENNYKGVACLNLMARRIATVFASLREFPSVRFRA AKSLDATTMTTFRDLIPTKLAAGVWDCLMKYKKTIPNFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNLEGNKY VHEVPGKDGGPPERKEVLLEDHDPVWLELRHAHIADASERLHEKMTNFVSKNKAAQIQHGSRNSGEMSTRDLQKMVQALP QYSEQIGKLSLHVEIAGKINRIIRESGLRELGQLEQDLVFGDATMKDVIKFFTTNEDISRENKLRLLMILAAIYPEKFEG EKGMNLMKVAKLTDEDICAVENLRMLGVQPNTKKSSTRTFGLKFDMNKKTRAARKERPGEEEKWQLSRFYPIIEDSSHHL NASCDVLMITQELIEKLTKNELSKVDYPCLNDPSPSFHSSPLAGSLNENHHSMRSRRTPTWARPRGSDDGYSSDSVLRHA SSDFKKMGRRIFVFIVGGATRSELRACHKLSGKLRREIILGSSSLDDPAQFITKLKTLTTHELSLDDLQI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11679:SF69 View details on PTHR11679:SF69 Search for proteins/transripts with this domain View external data on PTHR11679:SF69	1	548	548	0.0	–
PANTHER	PTHR11679 View details on PTHR11679 Search for proteins/transripts with this domain View external data on PTHR11679	1	548	548	0.0	IPR001619 Show description in modal box View details on IPR001619 Search for proteins/transripts with this domain View on EBI InterPro Service
PIRSF	PIRSF005715 View details on PIRSF005715 Search for proteins/transripts with this domain View external data on PIRSF005715	2	544	543	8.9E-126	IPR001619 Show description in modal box View details on IPR001619 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF56815 View details on SSF56815 Search for proteins/transripts with this domain View external data on SSF56815	8	539	532	1.83E-104	IPR036045 Show description in modal box View details on IPR036045 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00995 View details on PF00995 Search for proteins/transripts with this domain View external data on PF00995	10	533	524	1.6E-85	IPR001619 Show description in modal box View details on IPR001619 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1910 View details on G3DSA:3.40.50.1910 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1910	23	146	124	3.5E-7	IPR027482 Show description in modal box View details on IPR027482 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.830.10 View details on G3DSA:3.90.830.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.830.10	147	261	115	3.9E-37	IPR043127 Show description in modal box View details on IPR043127 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.40.60 View details on G3DSA:1.25.40.60 Search for proteins/transripts with this domain View external data on G3DSA:1.25.40.60	267	390	124	3.2E-11	–
Gene3D	G3DSA:3.40.50.1910 View details on G3DSA:3.40.50.1910 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1910	402	547	146	4.9E-28	IPR027482 Show description in modal box View details on IPR027482 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	438	473	36	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006904 View details of GO:0006904 AmiGO InterPro QuickGO	Biological process	Vesicle docking involved in exocytosis	The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.	Subterm of View details of GO:0048278 View details of GO:0140029
GO:0016192 View details of GO:0016192 AmiGO InterPro QuickGO	Biological process	Vesicle-mediated transport	A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.	Subterm of View details of GO:0006810

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0427100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi2g1v0427100.2