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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0428100 |
| Transcript ID | LotjaGi2g1v0428100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G45430.1 AT-hook motif nuclear-localized protein 22; Swiss-Prot: sp|O22130|AHL22_ARATH AT-hook motif nuclear-localized protein 22; TrEMBL-Plants: tr|I1LGK4|I1LGK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0428100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92539835..92542748) extracted from Lotus japonicus Gifu genome v1.2.
CCCATCCACCGCCCATAAACACGCAGTCTTGCCGAAGCCTTGGATCTAAATTCTCAATTCTCAATTCTCAATCTATAACC CTAAACTCCCCATCATTCCCTCTTACTTTCTTTTTCTCTCCATCGATCATCCTTCAACACAGGAACTATGTGCTTCTGAA AGCCACAGTCAATTCAATTCAATTCTTCTTCTGCTTCGCGCTTTCACAAACAGTTGAGGGTTCAACAAGATCATCATCAA CAGACCAGCAAACACTACAGCAGAGAATCACAAGACAATCTGGTCTGATATCACATGATTTCTTATCCTTTATTCATTTC CTTTCTATCTTGAAACTTGCCAACTCCAAATTCTACTTCTTCTTTATATATTCATTGCAAATTAAGCAAACTAGCTACTA TCACTATCTATATTCCCACTATCTTTCTAGCTATATCAACTATAGATAGAAATATACAAAACAATGGATCCATTATCAGC ACACGGCCACTCTCTTCCTCCTCCTTTTCTCCATCTGCACCACCAACACCAACACCAGCAGCAGCATCAGCAGCATCAGT TCCACTCTTTACAGCAGCAGCAAACCCCAGCAGAAGATGAACAGAGTGGAAGCAGCGGCGGCATCAAAAGGGAACGCGAT GAAAACAACAACAGCCATGACGGCAAAGAAGGCTCCGGAGGCGGAGGCGAAAGCGAGAATTCAAGAAGACCTCGAGGAAG GCCCGCCGGATCGAAGAACAAGCCTAAGCCGCCCATCATCATCACCCGCGACAGCGCCAACGCACTTAAGACCCACGTCA TGGAGGTCGCCGACGGCTGCGACATCGTCGACAGCGTCTCCAACTTTGCAAGACGCCGCCAGCGCGGCGTCTGCATCATG AGCGGCACTGGAACCGTCACCAACGTCACTCTCAGGCAGCCAGCTTCTTCCGGCGCTGTTGTCACCCTCCACGGAAGGTT TGAGATTCTCTCCCTGGCAGGATCGTTCCTGCCGCCGCCTGCTCCACCGGCAGCATCAGGTTTGACCATTTACTTGGCTG GTGGACAAGGGCAGGTTGTTGGAGGAAGTGTTGTGGGAGCTCTCATTGCTTCGGGACCTGTGGTTATCATGGCAGCTTCG TTCAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGACCCTTCATTGGCAATGCAAGGAGGTTCAATGGGTTC ACCACCCGGTGGTAGTGGTGGTGGTGGTGGAGTTGGTCAGCAACAGCAGCAACAGCTTTTAGGGGATGCAACTGCCCCAC TTTTTCATGGTTTGCCTCCGAATCTTCTCAATTCTGTTCAGATGCCAAACTCCGATAACTTCTGGCCATCTGGCCGCTCT CCTTACTGATGATGATGATGATATCAAAGTATGTTCCACCACGCAAGCTGCAGGCTGGCTTCTCTGCTAGCTTCCTTTCT CTATCCTTTTTGGGTACTCCAACCGCGTTCTGGCCATTTGCAAGTTTGGATCATCTTTTTTTTCTCAGAATCAATTCTGG TACTAATGAGCTAGCTACTATACTACAAAAGGTAGGTTACTATCAGAATTGATTTTGGCTTTAGAATTTTTCCAAACATG CAATAGTGATGAATGTCCAATTCGCGATTGAGGTTCTATTCTATTCGCTTCTCTTTAGAATTTGTGTGTCATTTTGATTA TTAGGTGAGTGAGTTGATATATGTTGACTTGTGTTTGAGACTTCTGTAATTAAATTGATGGATCGATCCTTGGTGAGTTT TATTAATTCTATGATATGCTAGCTACATTTGGTTCAAATGGCCTTGGAGGTTGAAGAGTTATCACTTATCAGGAAACAAA CGCAAAGGAATAAGAGAAGCTGCAGTTAGTCTAGACTACATACTTCTTAGTAATTTACTGCTGCTTGTTGTTGTGCCTTG AATCCTACATTTAGTTAAGTGTTTGAAAACTCTCTTTTGTAGTAAATTTTGATTGCATTCAATCTCTTGTTGTTAGTATT TTTGTGTTCGTCATTGTATGTGCGTCGGTTACCAGGTTTCGGGTAGCATATCTTTCTGAATTGAAGGTAATGTGCTTTTT GTTGTTTCGTTTTTGCATATACACAATCACGGATTCAGTGGGCATATATAGTGCTCTCTTGACGAAAGCATTGGAGGATG AGAGGGCTTAAATGTGGATATTGTGTATGTCAACTTACCTAGCTAAGTTTTTCAAATTGGATAAAAAAAGCATTAGTTAA TTAAAAAGTAGTACAAGAATTTAAATTAAAAAATAAAAAAGTAATGTAAATTGTTTTTTAAAGATTATTAAATACTAATC AGCCACCATGTCATCCAGGTTCTAGAAAAATTCAAAAATATGGGTGTTTTTCTCATTGATTTCTTTAGATTTAGAGTAGT AGCTACATACATAGTATGTTGAAGTAAGAAGATAAACATGGAACTGGGAGACACATGCAGTGTCTGATGAAAGCTCTTTT TCGAGGCAGTCACCCACACTTCCATTAAAAGGCAACGATAACCAAGAAAACAAGCTTCCCGAGCCTTACATGTATCTTGT ATCCCTCCCCTCTCCTCTTTAATTTGTTCTTTTTTTTTTCTTTCTCTTAATCAATTTATTTCTACCGCTAATAGGCGTGA AACTAATCATTTGACCCTACAATCAATGTACTAAGCACTAAAGGTAGTCAATGAGTATTTTTTTAATTATAAGAATTAAA AATCAAACCTGCAACTTTTCATTTAAGGGGTGAAGTGCTAAAATACTATGCAAAACAAATGATTCTTCCTTCTTCTCTTG TTCAATTCAAGTTCAACCCAAATCTAGTTAAGATCCGATGAATATCTTGCTTTTATCCCCGCCCACAAAAGATGAACTTA TATCCTATTTTATTTTCAATCCTCGTTTTATTAA
CDS sequence (LotjaGi2g1v0428100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCATTATCAGCACACGGCCACTCTCTTCCTCCTCCTTTTCTCCATCTGCACCACCAACACCAACACCAGCAGCA GCATCAGCAGCATCAGTTCCACTCTTTACAGCAGCAGCAAACCCCAGCAGAAGATGAACAGAGTGGAAGCAGCGGCGGCA TCAAAAGGGAACGCGATGAAAACAACAACAGCCATGACGGCAAAGAAGGCTCCGGAGGCGGAGGCGAAAGCGAGAATTCA AGAAGACCTCGAGGAAGGCCCGCCGGATCGAAGAACAAGCCTAAGCCGCCCATCATCATCACCCGCGACAGCGCCAACGC ACTTAAGACCCACGTCATGGAGGTCGCCGACGGCTGCGACATCGTCGACAGCGTCTCCAACTTTGCAAGACGCCGCCAGC GCGGCGTCTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACTCTCAGGCAGCCAGCTTCTTCCGGCGCTGTTGTC ACCCTCCACGGAAGGTTTGAGATTCTCTCCCTGGCAGGATCGTTCCTGCCGCCGCCTGCTCCACCGGCAGCATCAGGTTT GACCATTTACTTGGCTGGTGGACAAGGGCAGGTTGTTGGAGGAAGTGTTGTGGGAGCTCTCATTGCTTCGGGACCTGTGG TTATCATGGCAGCTTCGTTCAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGACCCTTCATTGGCAATGCAA GGAGGTTCAATGGGTTCACCACCCGGTGGTAGTGGTGGTGGTGGTGGAGTTGGTCAGCAACAGCAGCAACAGCTTTTAGG GGATGCAACTGCCCCACTTTTTCATGGTTTGCCTCCGAATCTTCTCAATTCTGTTCAGATGCCAAACTCCGATAACTTCT GGCCATCTGGCCGCTCTCCTTACTGA
Protein sequence (LotjaGi2g1v0428100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPLSAHGHSLPPPFLHLHHQHQHQQQHQQHQFHSLQQQQTPAEDEQSGSSGGIKRERDENNNSHDGKEGSGGGGESENS RRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVV TLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMAASFSNAAYERLPLEDEDPSLAMQ GGSMGSPPGGSGGGGGVGQQQQQQLLGDATAPLFHGLPPNLLNSVQMPNSDNFWPSGRSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 301 | 301 | 2.8E-142 | – | |
| PANTHER | 1 | 301 | 301 | 2.8E-142 | ||
| MobiDBLite | 1 | 99 | 99 | - | – | |
| PIRSF | 15 | 300 | 286 | 2.7E-108 | ||
| MobiDBLite | 28 | 48 | 21 | - | – | |
| MobiDBLite | 50 | 66 | 17 | - | – | |
| SUPERFAMILY | 105 | 235 | 131 | 1.73E-34 | – | |
| ProSiteProfiles | 105 | 241 | 137 | 40.296 | ||
| Gene3D | 108 | 233 | 126 | 4.1E-10 | – | |
| Pfam | 109 | 222 | 114 | 4.2E-30 | ||
| CDD | 109 | 176 | 68 | 3.22527E-20 | ||
| MobiDBLite | 234 | 301 | 68 | - | – | |
| MobiDBLite | 282 | 301 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi2g1v0428100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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