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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0429600 |
| Transcript ID | LotjaGi2g1v0429600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin-like protein; TAIR: AT1G12560.1 expansin A7; Swiss-Prot: sp|Q8W2X8|EXP30_ORYSJ Putative expansin-A30; TrEMBL-Plants: tr|A0A0R4J4A3|A0A0R4J4A3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0429600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92670191..92670804) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCTCCATTCTTGAAGCTTGTACTCTTATGTTTCTCACTTTTACAATGACGTTGTTCTCGTTCATGGGACAGCCAGC ACTAGCTGTGGTATTTCGACCCAGTAAATGGGCTCTTGCTCATGCTACCTTTTATGGTGATGAGACTGCTTCTGAAACCA TGGGTATGTATGCATACATATATGTTAATTATCTCCATTCCTGAATTATTGAGCAATAATTCAAAATTAGTACTATTACT ATTACTTTTAACAAGTGATGCTTAGCATTAACATACTTTTATTTGGACTTAAAGGAGGAGCATGTGGGTACGGGAATTTG TTTCAGAGCGGTTACGGGACAGATACAGTGGCTTTAAGCTCGACGCTATTTAACAATGGTTATGCGTGTGGGACTTGTTA CCAGATAAAATGTTACCAGTCCAGTGCATGCTATAAAAACGTGGCCTTCACCACTGTCACCGCCACCAATCTCTGCCCTC CTAATTGGTCCAAGCCCTCAGATAACGGCGGCTGGTGCAACCCTCCCCGAGCGCATTTCGACATGTCCAAGCCCGCCTTC ATGAAAATCGCTCAGTGGAAAGCCGGCATTGTCCCTGTCCTGTTCCGCAGGTAA
CDS sequence (LotjaGi2g1v0429600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCCATTCTTGAAGCTTGTACTCTTATGTTTCTCACTTTTACAATGACGTTGTTCTCGTTCATGGGACAGCCAGC ACTAGCTGTGGTATTTCGACCCAGTAAATGGGCTCTTGCTCATGCTACCTTTTATGGTGATGAGACTGCTTCTGAAACCA TGGGAGGAGCATGTGGGTACGGGAATTTGTTTCAGAGCGGTTACGGGACAGATACAGTGGCTTTAAGCTCGACGCTATTT AACAATGGTTATGCGTGTGGGACTTGTTACCAGATAAAATGTTACCAGTCCAGTGCATGCTATAAAAACGTGGCCTTCAC CACTGTCACCGCCACCAATCTCTGCCCTCCTAATTGGTCCAAGCCCTCAGATAACGGCGGCTGGTGCAACCCTCCCCGAG CGCATTTCGACATGTCCAAGCCCGCCTTCATGAAAATCGCTCAGTGGAAAGCCGGCATTGTCCCTGTCCTGTTCCGCAGG TAA
Protein sequence (LotjaGi2g1v0429600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASILEACTLMFLTFTMTLFSFMGQPALAVVFRPSKWALAHATFYGDETASETMGGACGYGNLFQSGYGTDTVALSSTLF NNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSKPSDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVLFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 2.3E-83 | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 160 | 160 | 2.3E-83 | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| Gene3D | 28 | 160 | 133 | 1.9E-38 | ||
| Phobius | 30 | 160 | 131 | - | – | |
| PRINTS | 36 | 51 | 16 | 1.4E-27 | ||
| SUPERFAMILY | 36 | 160 | 125 | 6.63E-41 | ||
| PRINTS | 54 | 72 | 19 | 1.4E-27 | ||
| ProSiteProfiles | 55 | 160 | 106 | 26.446 | ||
| PRINTS | 67 | 81 | 15 | 2.6E-28 | ||
| SMART | 72 | 158 | 87 | 5.1E-47 | ||
| Pfam | 72 | 157 | 86 | 2.1E-22 | ||
| PRINTS | 76 | 94 | 19 | 1.4E-27 | ||
| PRINTS | 107 | 117 | 11 | 2.6E-28 | ||
| PRINTS | 126 | 143 | 18 | 2.6E-28 | ||
| PRINTS | 143 | 156 | 14 | 2.6E-28 | ||
| PRINTS | 151 | 160 | 10 | 1.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi2g1v0429600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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