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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0432600 |
| Transcript ID | LotjaGi2g1v0432600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta; TrEMBL-Plants: tr|I3SF72|I3SF72_LOTJA Transcription initiation factor IIE subunit beta; Found in the gene: LotjaGi2g1v0432600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92949464..92951590) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTTGCAAGAAAAGCTTGACAGGTTCAAAAGGCAGCAAGAGAAGTGTCAATCGACCCTCACCAGCATTGCATCTAC CAAGGCTTCTGCTACACAAAATGGCCGAAGAACACCGACACCAACACCACCCGCTCCTGTTCCTGTCAAATTCTCCAACG ATACTGAGAGACTTCAGCATATTAACAGTATACGTAAAGCCCCCGTTGGAGCTCAGATGAAGCGTGTTATTGCTCTCCTA TTTGAGGTACACTTTTAATGTATTCACACATTTGAGCATTTGAGACATTTCGAGCTTATTTAGTTCATTTTGTAGTATAT AAGCTTCGATAAGCTCCAATAAGTTCGTATCGTAAACGGGCTCTTAGCAGTAACAGTCATTAGGTTATAATTCATAGTAG CTAAATTTAAGAATCAGATAACTGGTTAGGACTTAGGAGAATTTAATTCATAGTAACCCTTATACATGATGTATAGTTGT ATGAATATATGCTTTTCTGTTAGCCGTATGTAAGCTATTTTGTGGTTAATGAATGATCATTTCGAATGCGGGTTAATGTG CACCTTCTTTTAGCCAATCTCTGCCATCTTTTAAGGTTGATGGATACATTCATGTTGCCATGGATACTTATTTAGTGTCT TGTGCTTGTCTTTGCTTAACAGTCTCGACAGGCTTTCACAATGGAGCAAATAAATGAAGCATGCTATGTGGACATGAGAG CTAACAAAGATGTTTTTGACAGTATGAGGAAAAACCCGAAAGTCAAATTTGATGGGGAGAAATTCTCTTACAAGGTAGCT TTTGTTCATGCATATATGTAAACCTTCATGTGTTCAATTTTGTTCACTTTGATAATAACAACCTCTTCAATGATACTACT ATTTTGGTTATGACATTTGGCATTGCTTTTGGTGTGTATAGTCAAAGCATGATCTTAGGGACAAAAAAGAGCTGCTCTTT CTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACCTAAAGGATTCTTACCCAACTGTGTTGGAGGACTTGCAGGT AAATTATTTTTATTAGTTAGTTTTGTTTATGAAAATTTCTTGACATTCATTTTTTAATAATGTCAGTGGAATTTTATTGT GGATTTGGCCTTGTTGAGCAACTATTCTTGTCTCAGGTTTTTATTCATTCTCATTGTGTAATGAATTTCTGGGCGAAACA TGATTGCCAAAATCACTCATCACCATACTTATGAAAGAAGATAAAATCTTAGAAGATCATTTTATCCCTTTTTCTCAAAC TTAGTTATCAAGATTTCATAATAGCTGGTAGTGTGGAAAATAATTTTTTTAAGTTATTACAAAATCTGCACTTTAAGGTG GATACCCTGAATGCTGCTTAATCTTTTGCTGGTACTGTCTCAAATAATGGATCTGGAATTCTGTGATAACTATGGAAGAT AGCTGGCTTTTGAATGTGATTACTGAAGGATTTTGGTTGTGTACCAGATATTTACCATTTTAGAGTAGCATTCCATTTTG TAGAATAGAACTATCAAAATTTACTTCTTTTGAGTCATTTCTTTTACTCTGCTGATTAGAGTTTTACATGATACATATAA ACGTCAACTATTATGGTATGTTGTATTAAACATGCAAAGAAGAATAGAACTATATGATAAATTTGATCTTAAGCATCTAA CTTGCTGTGGTGAGAGATAATGTTTTTGAAGAGGTGAAGAGTTAAAATTTTGTGAAATAATTGGTTTCTCATGTAATAAG ACCTTATAATGCTTTCGGTTCCCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGCTGTCCAACTTTGATTCCCAGGAAG ACATTGCCTACCCTAATGATCCTAAAGTTCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTCCGGGGGATTGAATTG CCTCGTGATATGATTGATATTGAGAGGGATCTCCAAAAAAACGGAATGAAGCCTGCTACTAACACAGCAAAGAGAAGGAG TGCAGCGCAAATGCAAGGCATTTCTTCCAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACCAAGAGGACCAAGCTGA CTAATGCCCATCTTCCAGAGCTTTTTCAGAACTTAAAAGATTCTTGA
CDS sequence (LotjaGi2g1v0432600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGCAAGAAAAGCTTGACAGGTTCAAAAGGCAGCAAGAGAAGTGTCAATCGACCCTCACCAGCATTGCATCTAC CAAGGCTTCTGCTACACAAAATGGCCGAAGAACACCGACACCAACACCACCCGCTCCTGTTCCTGTCAAATTCTCCAACG ATACTGAGAGACTTCAGCATATTAACAGTATACGTAAAGCCCCCGTTGGAGCTCAGATGAAGCGTGTTATTGCTCTCCTA TTTGAGTCTCGACAGGCTTTCACAATGGAGCAAATAAATGAAGCATGCTATGTGGACATGAGAGCTAACAAAGATGTTTT TGACAGTATGAGGAAAAACCCGAAAGTCAAATTTGATGGGGAGAAATTCTCTTACAAGTCAAAGCATGATCTTAGGGACA AAAAAGAGCTGCTCTTTCTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACCTAAAGGATTCTTACCCAACTGTG TTGGAGGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGCTGTCCAACTTTGATTCCCAGGAAGACATTGCCTA CCCTAATGATCCTAAAGTTCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTCCGGGGGATTGAATTGCCTCGTGATA TGATTGATATTGAGAGGGATCTCCAAAAAAACGGAATGAAGCCTGCTACTAACACAGCAAAGAGAAGGAGTGCAGCGCAA ATGCAAGGCATTTCTTCCAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCA TCTTCCAGAGCTTTTTCAGAACTTAAAAGATTCTTGA
Protein sequence (LotjaGi2g1v0432600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALQEKLDRFKRQQEKCQSTLTSIASTKASATQNGRRTPTPTPPAPVPVKFSNDTERLQHINSIRKAPVGAQMKRVIALL FESRQAFTMEQINEACYVDMRANKDVFDSMRKNPKVKFDGEKFSYKSKHDLRDKKELLFLIRKFPEGIAVIDLKDSYPTV LEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQ MQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 3.3E-165 | – | |
| PANTHER | 1 | 276 | 276 | 3.3E-165 | ||
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PIRSF | 2 | 277 | 276 | 5.2E-24 | ||
| MobiDBLite | 16 | 38 | 23 | - | – | |
| ProSiteProfiles | 57 | 132 | 76 | 11.263 | ||
| Pfam | 71 | 130 | 60 | 1.1E-7 | ||
| Pfam | 132 | 189 | 58 | 2.8E-14 | ||
| MobiDBLite | 224 | 278 | 55 | - | – | |
| MobiDBLite | 225 | 244 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIE complex | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi2g1v0432600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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