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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0433100 |
| Transcript ID | LotjaGi2g1v0433100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin depolymerizing factor, putative; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|I3S6E4|I3S6E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0433100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93011684..93014335) extracted from Lotus japonicus Gifu genome v1.2.
CAAGGATCTATTCTTAGTCTCCTCAAATTTCCACCTCTCATAGCTCCAAAAATTAAGGATCTTTATTTGTTATTTCTCTC CACAATTTTCATTGAGTCTGCTGCTCCCATTTTCCATTATCTATTGCTCCCTTACCTTTCTTTCATTCACATTTCAAAGG GCGCTAGCTTCTTCCTCATTGCTGGCAAAATGGTACTTACTTTTCTCTCCATCTCTTCTTTTCCTTATGTCATTGGAAAC TATTAACTAGTTAGTTAGTTATATATAATAGTTGTTGCTGTTTTGTGAAATGTCTTCTTCCTTCTGAAAAAACAGACAAT CTATTTATGTTTTCTCCAAGTAACCTCTCCTTAATAATTCACATTTCATGAATTAAGATGGTTTTAGACGTATGAAAATG AAACTTAATGGTCATGTGTAGGAAAATGAACTACCATTCCATTATGAGCATCTCCTATTTAAATGACTCAAAAGATTATC CAATTTACTTTCTAGTTTGTTTTTAATGTTCTTTAGTTTCATATCAAGACAAAAGGACCTGTCGCGTCAATTCATGAAAG GTTAGAAGTTTAGAGAACTAAATAAAAATCCCAAATTCTCATTCTATTTCCTTTTAATAAAAGGCCAAAGTATCTCAAAA TTGTGACAATGTGATGAAGAAATTAATTATGATGGGAAAGCGCATAAAACTATTTATAATTTGGCATAAATTAACCATTC CAAATAGTTAGCAACAGTGTCAGTTGTGTTTGCTTTTACGTTGACCCAACGTAAATGCCAACGGAAGCTTTGAACTTCTT TCACATTTGCACTTTAGGATTGTGCAATCACGAGTTCCATTAAGTCTGAATGCGTGTGAATGTGTTTTTGGGTATAAACT CAAACTCACACTTAAGGGATGAGCAAAAATACCTTTTAAACCCCGAAACTGATAAACCAAGAGTAAAAAAAAAGTGAAAT GGGTGAGTTCGGGCGGGTTATCAGGTCTACGAGTGAAAATAAGCAGTTTGACATAGATATTAATGGACCAACGAGTGCGA GTTCATAAATTTCCTACCATCAATTTGTGAATCCACCCGATTTATTAATGGAACTCTACTAAATCATACTTAATTGTTGG GTAAAGTTACATGAATGATTTTACATTATATTTCAATCACATTTTTATGCAATAGCCCATTGTCCTTAATTTCTTGGGCA CAACCCGATTGTCTCTTGCTTAAGCAATGCACATGTCCATTCAATTGCTCTGTGTTTACATTTAATTTATTTCAGAACAA TAGGACCAGTATAGATTGAGTGGTGATGAATTATATTTATGTACCAAAATATATATAATATGAAAGTGTCGCACAAGACA AGAAATGATTTGTTAGTTTGATGAGAAAAAGTTGATGAACAGGCAAATGCAGCGTCCGGAATGGCTGTGCAAGATGAATG CAAACTGAAGTTCCAGGAGCTTAAAGCAAGAAGGGCCTACCGATTCATCGTATTCAAAATTGAGAAACAACAAGTCATGG TAGAGAAATTAGGGGAACCAACGGAAAACTATGATGATTTTCAGGCCAGTTTGCCAGCTGATGAGTGTCGTTATGCCGTC TATGATTTTGATTTCACCACTGAAGAGAATTGCCAGAAAAGCAAGATCTTCTTCATTGCATGGTACAAAATCACATACAT TCATTTTAGCTTCTAGATTTGAACAAAATTGTTATGATTAGTGTGATGTGATGAATGATCATGCAGGTCACCAGACATTT CAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAGATTCAAGAGGGAACTCGACGGCATTCAATTCGAACTT CAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTTAAAGCTCGAGCCTTCTAAACACCCCTCTTCCTGTGTCACCT CTACTTCACAGTTATCAATTAATTCCTAACTGTTCCACAACTTTGGGGGGACATAGTGCATGTTATTACTTTGTTTTGCC TGGATTCAATCAACACCTACTAATCCAAAATCGCCATGTATTATTATAATGCAAACATTCTTCCTTAAACTCAGTCATTG TTCAGTTTTCTGTTGATCTTGGTTAGTCTCAACACACCTGCATCAAGGCTGGTACGAAAATTAAGTAGCACCCATTATAG CTTACTACTTGGTTTTGCAGTTGGAAGAGTATGTTATGTAAAAGCACTTCTTATACTGATTAACATTGTTAATATGCAGA TTGCAGAACCGTATTTACATTACTGAAACTGTTCATGCAAATATTCTAAATACCTAGCTAAGCCAATTATGTGCATGTTT GGATTTCCTTCACAAAATCAATTCTGATGTGAAACTTATGTGAGTAACTTGTGTGTCAAAATTGATTTTGGATAAATAAA AGCTGATCCAAAACATGTCATACATTCTATGTCAATTATAACCTTTTGTGACCCGCCTTGTTTATGGTATAACCCACTGT TTACACAGATGGCTTAGTTTGAAACCATTTTTTGTAGGTAAAAGGTCCTTGTAGCTTCATTAATGTAAATAAGGTAGTTT ATAACAAGTTAAATAGTACAAAGTCTGATTTATCTGTAAAGAAAGTCTGATTTAGAGAATACTTTGCCTTAATGGGATTG GGCACTTTAAAT
CDS sequence (LotjaGi2g1v0433100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATGCAGCGTCCGGAATGGCTGTGCAAGATGAATGCAAACTGAAGTTCCAGGAGCTTAAAGCAAGAAGGGCCTA CCGATTCATCGTATTCAAAATTGAGAAACAACAAGTCATGGTAGAGAAATTAGGGGAACCAACGGAAAACTATGATGATT TTCAGGCCAGTTTGCCAGCTGATGAGTGTCGTTATGCCGTCTATGATTTTGATTTCACCACTGAAGAGAATTGCCAGAAA AGCAAGATCTTCTTCATTGCATGGTCACCAGACATTTCAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAG ATTCAAGAGGGAACTCGACGGCATTCAATTCGAACTTCAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTTAAAG CTCGAGCCTTCTAA
Protein sequence (LotjaGi2g1v0433100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANAASGMAVQDECKLKFQELKARRAYRFIVFKIEKQQVMVEKLGEPTENYDDFQASLPADECRYAVYDFDFTTEENCQK SKIFFIAWSPDISRVRMKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIVKARAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 136 | 136 | 2.9E-51 | ||
| PANTHER | 2 | 136 | 135 | 1.5E-102 | – | |
| PANTHER | 2 | 136 | 135 | 1.5E-102 | ||
| SUPERFAMILY | 3 | 135 | 133 | 5.35E-45 | – | |
| ProSiteProfiles | 5 | 137 | 133 | 36.504 | ||
| CDD | 6 | 136 | 131 | 1.73433E-62 | ||
| SMART | 12 | 137 | 126 | 7.7E-56 | ||
| Pfam | 14 | 134 | 121 | 5.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi2g1v0433100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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