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LotjaGi2g1v0433100.1

Overview

Field Value
Gene ID LotjaGi2g1v0433100
Transcript ID LotjaGi2g1v0433100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin depolymerizing factor, putative; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|I3S6E4|I3S6E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0433100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:93011684..93014335) extracted from Lotus japonicus Gifu genome v1.2.

CAAGGATCTATTCTTAGTCTCCTCAAATTTCCACCTCTCATAGCTCCAAAAATTAAGGATCTTTATTTGTTATTTCTCTC CACAATTTTCATTGAGTCTGCTGCTCCCATTTTCCATTATCTATTGCTCCCTTACCTTTCTTTCATTCACATTTCAAAGG GCGCTAGCTTCTTCCTCATTGCTGGCAAAATGGTACTTACTTTTCTCTCCATCTCTTCTTTTCCTTATGTCATTGGAAAC TATTAACTAGTTAGTTAGTTATATATAATAGTTGTTGCTGTTTTGTGAAATGTCTTCTTCCTTCTGAAAAAACAGACAAT CTATTTATGTTTTCTCCAAGTAACCTCTCCTTAATAATTCACATTTCATGAATTAAGATGGTTTTAGACGTATGAAAATG AAACTTAATGGTCATGTGTAGGAAAATGAACTACCATTCCATTATGAGCATCTCCTATTTAAATGACTCAAAAGATTATC CAATTTACTTTCTAGTTTGTTTTTAATGTTCTTTAGTTTCATATCAAGACAAAAGGACCTGTCGCGTCAATTCATGAAAG GTTAGAAGTTTAGAGAACTAAATAAAAATCCCAAATTCTCATTCTATTTCCTTTTAATAAAAGGCCAAAGTATCTCAAAA TTGTGACAATGTGATGAAGAAATTAATTATGATGGGAAAGCGCATAAAACTATTTATAATTTGGCATAAATTAACCATTC CAAATAGTTAGCAACAGTGTCAGTTGTGTTTGCTTTTACGTTGACCCAACGTAAATGCCAACGGAAGCTTTGAACTTCTT TCACATTTGCACTTTAGGATTGTGCAATCACGAGTTCCATTAAGTCTGAATGCGTGTGAATGTGTTTTTGGGTATAAACT CAAACTCACACTTAAGGGATGAGCAAAAATACCTTTTAAACCCCGAAACTGATAAACCAAGAGTAAAAAAAAAGTGAAAT GGGTGAGTTCGGGCGGGTTATCAGGTCTACGAGTGAAAATAAGCAGTTTGACATAGATATTAATGGACCAACGAGTGCGA GTTCATAAATTTCCTACCATCAATTTGTGAATCCACCCGATTTATTAATGGAACTCTACTAAATCATACTTAATTGTTGG GTAAAGTTACATGAATGATTTTACATTATATTTCAATCACATTTTTATGCAATAGCCCATTGTCCTTAATTTCTTGGGCA CAACCCGATTGTCTCTTGCTTAAGCAATGCACATGTCCATTCAATTGCTCTGTGTTTACATTTAATTTATTTCAGAACAA TAGGACCAGTATAGATTGAGTGGTGATGAATTATATTTATGTACCAAAATATATATAATATGAAAGTGTCGCACAAGACA AGAAATGATTTGTTAGTTTGATGAGAAAAAGTTGATGAACAGGCAAATGCAGCGTCCGGAATGGCTGTGCAAGATGAATG CAAACTGAAGTTCCAGGAGCTTAAAGCAAGAAGGGCCTACCGATTCATCGTATTCAAAATTGAGAAACAACAAGTCATGG TAGAGAAATTAGGGGAACCAACGGAAAACTATGATGATTTTCAGGCCAGTTTGCCAGCTGATGAGTGTCGTTATGCCGTC TATGATTTTGATTTCACCACTGAAGAGAATTGCCAGAAAAGCAAGATCTTCTTCATTGCATGGTACAAAATCACATACAT TCATTTTAGCTTCTAGATTTGAACAAAATTGTTATGATTAGTGTGATGTGATGAATGATCATGCAGGTCACCAGACATTT CAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAGATTCAAGAGGGAACTCGACGGCATTCAATTCGAACTT CAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTTAAAGCTCGAGCCTTCTAAACACCCCTCTTCCTGTGTCACCT CTACTTCACAGTTATCAATTAATTCCTAACTGTTCCACAACTTTGGGGGGACATAGTGCATGTTATTACTTTGTTTTGCC TGGATTCAATCAACACCTACTAATCCAAAATCGCCATGTATTATTATAATGCAAACATTCTTCCTTAAACTCAGTCATTG TTCAGTTTTCTGTTGATCTTGGTTAGTCTCAACACACCTGCATCAAGGCTGGTACGAAAATTAAGTAGCACCCATTATAG CTTACTACTTGGTTTTGCAGTTGGAAGAGTATGTTATGTAAAAGCACTTCTTATACTGATTAACATTGTTAATATGCAGA TTGCAGAACCGTATTTACATTACTGAAACTGTTCATGCAAATATTCTAAATACCTAGCTAAGCCAATTATGTGCATGTTT GGATTTCCTTCACAAAATCAATTCTGATGTGAAACTTATGTGAGTAACTTGTGTGTCAAAATTGATTTTGGATAAATAAA AGCTGATCCAAAACATGTCATACATTCTATGTCAATTATAACCTTTTGTGACCCGCCTTGTTTATGGTATAACCCACTGT TTACACAGATGGCTTAGTTTGAAACCATTTTTTGTAGGTAAAAGGTCCTTGTAGCTTCATTAATGTAAATAAGGTAGTTT ATAACAAGTTAAATAGTACAAAGTCTGATTTATCTGTAAAGAAAGTCTGATTTAGAGAATACTTTGCCTTAATGGGATTG GGCACTTTAAAT 

CDS sequence (LotjaGi2g1v0433100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAATGCAGCGTCCGGAATGGCTGTGCAAGATGAATGCAAACTGAAGTTCCAGGAGCTTAAAGCAAGAAGGGCCTA CCGATTCATCGTATTCAAAATTGAGAAACAACAAGTCATGGTAGAGAAATTAGGGGAACCAACGGAAAACTATGATGATT TTCAGGCCAGTTTGCCAGCTGATGAGTGTCGTTATGCCGTCTATGATTTTGATTTCACCACTGAAGAGAATTGCCAGAAA AGCAAGATCTTCTTCATTGCATGGTCACCAGACATTTCAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAG ATTCAAGAGGGAACTCGACGGCATTCAATTCGAACTTCAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTTAAAG CTCGAGCCTTCTAA 

Protein sequence (LotjaGi2g1v0433100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANAASGMAVQDECKLKFQELKARRAYRFIVFKIEKQQVMVEKLGEPTENYDDFQASLPADECRYAVYDFDFTTEENCQK SKIFFIAWSPDISRVRMKMVYASSKDRFKRELDGIQFELQATDPSEMSLDIVKARAF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 136 136 2.9E-51
PANTHER 2 136 135 1.5E-102
PANTHER 2 136 135 1.5E-102
SUPERFAMILY 3 135 133 5.35E-45
ProSiteProfiles 5 137 133 36.504
CDD 6 136 131 1.73433E-62
SMART 12 137 126 7.7E-56
Pfam 14 134 121 5.5E-37

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Biological process Actin filament depolymerization Disassembly of actin filaments by the removal of actin monomers from a filament.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0433100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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