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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436500 |
| Transcript ID | LotjaGi2g1v0436500.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G16860.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3S288|I3S288_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0436500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93279368..93284124) extracted from Lotus japonicus Gifu genome v1.2.
TTATATCACTTTTTTCTTCTTCTCCTTTCTTTTCTTGTATTTGGGATTAGCACCCCTTGTGCTAAATTTGAATGCAATTC TTTGTTCTATCAAAAAAAAAATTCACAATTTTTTCTTTCTATCTTTCTTCATTATTTAATCGCCCATTTTTCTTCTTTTA GTCCACGGTACAATTTTTTTCCAAGGTAGGTCCACGTTTTAGACTTGAGAATTTCTGACGCGCAACTTATAGTTGACTTT CTAGCTAGTTGCGGCATTTAGGCCAATCAAATCCACAAAGAGTATGCTAATTAAGATTTACATTCACTTCTCTTGTTTAA TTTCTTTATCTTTTTCACATCAAATCTCTATTTTTTGTTTTTAACTAATTTGTTTACACAGGAGGAGGGAAGAGATCAAC TTACATAGACATGTTTTCAGGCATAAATTTTGACGAGTTCAGCAGACGACTTTCAAAGGTAAATCTGGTGAAAAGCTCAT ATATAGCCTTTTAATCATCACTGTAAGAATAGTTAAGATTTTTTAAAATTATTTTGATTCTAATGACTGCAACATGCTTT TCTAACTTAAGCTATCTATATATCCTTATCATGTTATGGTCATTTGAAGTTTTTTTTTTATTGGCCAAATTTCCCTTCCA AGGTTCGTTCGAACATTGAACATTCCCTTCCCTGACCCTTATGCATGTCCTCATCTTTTATCACTTGGGCTATCATTTAG AGACAATCATTTGAAGTGTTGTACATTTTTTTTCTAACTATGCTTAAGTGGATCTCTGAGACCAAACTAATTAAGAAATC AATTTCAGATGAACATTAATGCCGCCTCAATTTCGCTGGATGAAGAGTATCGGGGGCTGATTAGTAAGAGGTCTTTCGTA TTGAGTAAAATTGAAACGGACGGAGTTGAAAATGAACGAATCCATGATGATGTTCGGAAGTGGCTAAATGAAGTAGAGAA AGTAGTAAAAGATGTGAAGGAAAGAAAAGCATCAAGAAATGCAAGTAGGATGGATGATGAATGGTCCTCGACAATGATAA AGAAGATAAAAAGGCTTTGTGAGGAGTGTAGATTTACTGAATATTACATCCCAAAACCAGACTCATCATCATCATGTGAG TGTCTTTGTGAATATTGCCTAGCTGCATCAGCTGTAGAGCCTAAATCCATCAAGACACAAGATGTCCCAATTCCACCGCA ACCTTCAAGTGTCCAGGAGTACGCCTCTCATAAAAAAATTGGGTCTTCATTTTCCTCGAAAGTCCCAACTCCACTGCAAC CTCCCAGTGTTGAGGAATATGCCTCTCACAGAAAAGTTGGGTCTTCATTTTCCTCAAAAGTCCCAACTCCACCGCATCCT CCAAGTGTTGAGGAGATGTGTTCTCATAGAAAAGTTGAGTCTTCATTTTCCTTGAAAGTATCGACCCCACCGCAACCTCC AAGTATCGAGGAGTACGCCTCTCGTAAAAAAGTTAGGTCTTTATTCTCCTCAAAAGTCCCAACTCCGCCGCAACCTCCAA GTGTTGAGGAGTACGCATCTCGCCAAGGTCCATGTTTTTTTAATCACTTCTCTTGTTAATTTAATATCTATATCTTAATT ATTCACATCAATCTCTATTTTATTTTAACTAATTTGTTCACGCAGGAGGAGGGAAGAGATCAACTTACACCAACATGCAA GACATAAATTGTGACGAGTTCATCAGCCGACTTTCAATGGTAAATTCGGTGAAAAGCTCGTATATAGCCTTTTAATTATC ACTGTAAGAATAGTTTCAGATTCTTTTGATTACTCATATTGATTCTAATGACTGCAGCATGCTTTTCTAACTGAAGCTAT ACACACACATATATAATATATATATCCTTATCATGTTATTTTCATTTGAAGTGTTTTACATTTTTTTTCTAAATATGAGT TATGTAAACAGTTTTCCATGACATATCTGTATTATTGCATGGATAGTAAGCCGTTAATTTTTTTAAATAAATTATTTTGG CGGTTACCTATGCTTAAGTGGATCTCTGACAGCAAACTAATTACAAAATCAATTTCAGGTGGAAAATGTCACCTCAATTT CGCTTGATGAAGAGTATTGGGGGCTGATTACTGAGAGGTCTCACGTATTGGATAAAATTGAAATGGACGGAGTTGAAAAT GAACGAATCCATGATGATGTTCGGAAATGGCTGAATTAATGAAGTAGAGAAAGTAGTAAAAGATGTGGATGAAAGAAAAG CATCAAAAAATGCAGGTACGATGGATGATGAATGGTCTTCTACAATGTCCCAACACCGCCGCAACCTTCAAGTGTTGAGG AGTACGCCTCTCGTAGAAAAGTTGGGTCTTCATTTACCTCAAAAGAAGCTCCAAATCAACAGTTGAAGGTGGAAGAAGAA GATGATGCTTGCCATAAATCTATAAGTTGTTCTTCTACAACTCCACTTACAAAGTCAATCTCTTCTGCAAAGTCTATGTC TTCCAACTCTACGGAAGAAGCGTTTAGTGATGATACTTTTGTAGGCTTACAAGTAACGTCAGGAGACTTTATGTATTTGG GCTCTTGAAATCAAGCTAAAAATATTCTTTTGAATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGAAAG AGAGGCTCTGGTAAAACAACGTTGGTGGAAGCTGAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTGTTA CTGTGTCAGAACAAGCAGATATTGCAAAACTTCAGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATTAAA AGTAAATACAGAAGAGCATCTGCAATAAAATCAGCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGATGT TTCGACAAACTTTGGTCTTCATGATATTGAAGATATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGATCA CACATGACAAAATGTACTGCAACATGATCAGATGTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCTTGG AAGCTGCTCCAACAATATTCAGGCATAGACAATGACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATTTCT ATGTATAGGGTTACCTCGTGTAATTAAAGATGTTGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAACAT TAGACTGTCTAAATCATTCTACAGCCTCCCACCAGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTCACT GCTTCTCTCTTTGATGCTTTAGTCCAAGGAGGATTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCAAGT TTCAGAAGCTCTCGTAAAAGCAATTGAACAATCAAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTTCAT GGTGTCTTGATGAATTACTCAGGATTCTTAAGTGTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAAGTG GATCCCACAAACGTAAGATATGTGAAAGGAAGCTTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGATAC GATACAAGAGTGGACTTCAGCTTTGTTCGAAGTTTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTAAGCAATAT ATATCCTTCCAATTATTTTCATTTATTAATCCATAGTTAATATCTAGTCTCTATTTTCAAAAAAAAATTCTAGTCTCTTA GCTAACTTTTTTTTCAATTTAAAAGTTTAAATATCTTTTAAAATGATTTTGTAAATAAGGATTGTCCATATTGTTGGTTA TTCAAGTTTTGTTTCTCGTTTGAATTCAATTTTATATTTTGTGTGACTGAGCTATTGTGAATTTAAATTTATGAGAAACT TGTTTTTGTATGAATTTTGTAGAATTAATTCTATCTAATACTCCCTCTGTTCCTATTTATAAGTCACAAAAAACTAATTC TCTTATATTAAGAAAAATAGTTAGTAATAATAAATTTGTAAAGGAAATGATTAGCTTTCCTAGACTACCCTTATTTACTT TTCTATAATTTTCTCTCTCCAAGTTAATATATCAAAAGTTCATCATCTCTTTCATATTAAATATGAGGGTGAATTTGGAA AAAATTATTTAATGCTTCTTAGATATTAGAAAGTGACTTATATTTAGGAACACATTTTTTTTCAAAAAATGTGACTTATA ATAAGGAATGGAGGGAGTAGAAATTAAGAAAATGAAAACTGTATGCATACATTAATTAAGAGACCGTGTCTAATGTTTAT ACTTTTGCAGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAGAGAATATACATCGTTTGCATATTGTA TAAAACACTCTTATGGAATTGAGGGGAGATTTTTGTTCTATTATTACATTAAGAGTTGCAAGAAACAAATGGAGACAACG ATTATATTAATATTGCATGGCTCACAAAAGGCTTGTGATTGGAATGTTCATCTTCAATAGTGAGACTTTCTTTGGAGACT AGAGTTGCTATTGCTATATATATTGAAATTTGAAACCTCAAAAAATGGAACATATATATATAAATCATCAGGTACAGTTG GGTAAAATAATGAAGTTTGTACGAGTATGATTTTTTGAAAAATATACAATAGAAATTTTGAGGAATCATTAATCAAAATT TATTTAAATTTTTTAAAGTGTCCTGACAATGGATCAA
CDS sequence (LotjaGi2g1v0436500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGAAAGAGAGGCTCTGGTAAAACAACGTTGGTGGAAGCT GAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTGTTACTGTGTCAGAACAAGCAGATATTGCAAAACTTC AGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATTAAAAGTAAATACAGAAGAGCATCTGCAATAAAATCA GCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGATGTTTCGACAAACTTTGGTCTTCATGATATTGAAGA TATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGATCACACATGACAAAATGTACTGCAACATGATCAGAT GTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCTTGGAAGCTGCTCCAACAATATTCAGGCATAGACAAT GACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATTTCTATGTATAGGGTTACCTCGTGTAATTAAAGATGT TGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAACATTAGACTGTCTAAATCATTCTACAGCCTCCCACC AGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTCACTGCTTCTCTCTTTGATGCTTTAGTCCAAGGAGGA TTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCAAGTTTCAGAAGCTCTCGTAAAAGCAATTGAACAATC AAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTTCATGGTGTCTTGATGAATTACTCAGGATTCTTAAGT GTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAAGTGGATCCCACAAACGTAAGATATGTGAAAGGAAGC TTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGATACGATACAAGAGTGGACTTCAGCTTTGTTCGAAGT TTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAG AGAATATACATCGTTTGCATATTGTATAA
Protein sequence (LotjaGi2g1v0436500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHCKMIDTIQLDYSEREALVKQRWWKLRYLRMKIFFHLIVSVTVSEQADIAKLQNQIAHQLNLKLQAIKSKYRRASAIKS ALLKSVDKVLVIFDDVSTNFGLHDIEDIGIPDPSKQCKVLLITHDKMYCNMIRCNPWIPLHPLSNEDAWKLLQQYSGIDN DSPSDLINVAREVAFLCIGLPRVIKDVVSALHKKDTKHWKETLDCLNHSTASHQIFISFRGKDTRDDFTASLFDALVQGG FKVFKDDEQLRSGDQVSEALVKAIEQSRCSIVVLSENYAESSWCLDELLRILKCRKKMKQLVLPIFYKVDPTNVRYVKGS FGEAMTKKKERFKEDTIQEWTSALFEVSDLSGRDYKTGRSQVVFIKEIVQYVRENIHRLHIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 19 | 136 | 118 | 3.7E-8 | – | |
| SUPERFAMILY | 31 | 207 | 177 | 1.27E-21 | ||
| Pfam | 36 | 212 | 177 | 1.0E-22 | ||
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| SUPERFAMILY | 209 | 352 | 144 | 1.44E-37 | ||
| Gene3D | 210 | 380 | 171 | 1.7E-61 | ||
| ProSiteProfiles | 211 | 350 | 140 | 26.169 | ||
| SMART | 212 | 350 | 139 | 3.3E-39 | ||
| Pfam | 213 | 372 | 160 | 8.5E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0436500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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