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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436500 |
| Transcript ID | LotjaGi2g1v0436500.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G16860.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3S288|I3S288_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0436500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93279368..93284683) extracted from Lotus japonicus Gifu genome v1.2.
GAAATATCTAGTCTAGTCTAACACAAGGTGGGAAAGAAGCCACGGACGCAATGACAGTCAAGCCCGCAGAGTTAAAAGTG AAGCTGCAAAAACTGCTTACAAAATGAACAGAGGAGTTGATATGTATTAATGAAAAGCAGATTCAATTGCAGAACGATCT TTAATGCGTCATCTCCTCCCCTGTTCTCTCAAAATCAGATTCATGGTGTAAGGTTTTGCAACTTCTCCTTCAAATCTTCT TAGCTGAGCTTGTTGAAGGTATTGTTTTTCTTTTATTTGAAACGAATGACAAATTGCACTCTATATTTGTGCAAGGGAAA ATCGATTTTGTAGAATTAGGTAGTAGCTACCCAAATATGCTGTTGGGGAGTTTTACCGTGAACATTATTGTTAAAAATTT CATCAATCTATGAATCATGTTTCTACAATTTACATTTGGTATTCGTTATTTACAACATGATTTTTATGTACTAAAATTTA TTTATTTACAGAGAACTTCTTAACATATGAACCATATTTTTTAAAGAGTTTTGATATGTTCACATCTCACTTTTTTCTCT TATATCACTTTTTTCTTCTTCTCCTTTCTTTTCTTGTATTTGGGATTAGCACCCCTTGTGCTAAATTTGAATGCAATTCT TTGTTCTATCAAAAAAAAAATTCACAATTTTTTCTTTCTATCTTTCTTCATTATTTAATCGCCCATTTTTCTTCTTTTAG TCCACGGTACAATTTTTTTCCAAGGTAGGTCCACGTTTTAGACTTGAGAATTTCTGACGCGCAACTTATAGTTGACTTTC TAGCTAGTTGCGGCATTTAGGCCAATCAAATCCACAAAGAGTATGCTAATTAAGATTTACATTCACTTCTCTTGTTTAAT TTCTTTATCTTTTTCACATCAAATCTCTATTTTTTGTTTTTAACTAATTTGTTTACACAGGAGGAGGGAAGAGATCAACT TACATAGACATGTTTTCAGGCATAAATTTTGACGAGTTCAGCAGACGACTTTCAAAGGTAAATCTGGTGAAAAGCTCATA TATAGCCTTTTAATCATCACTGTAAGAATAGTTAAGATTTTTTAAAATTATTTTGATTCTAATGACTGCAACATGCTTTT CTAACTTAAGCTATCTATATATCCTTATCATGTTATGGTCATTTGAAGTTTTTTTTTTATTGGCCAAATTTCCCTTCCAA GGTTCGTTCGAACATTGAACATTCCCTTCCCTGACCCTTATGCATGTCCTCATCTTTTATCACTTGGGCTATCATTTAGA GACAATCATTTGAAGTGTTGTACATTTTTTTTCTAACTATGCTTAAGTGGATCTCTGAGACCAAACTAATTAAGAAATCA ATTTCAGATGAACATTAATGCCGCCTCAATTTCGCTGGATGAAGAGTATCGGGGGCTGATTAGTAAGAGGTCTTTCGTAT TGAGTAAAATTGAAACGGACGGAGTTGAAAATGAACGAATCCATGATGATGTTCGGAAGTGGCTAAATGAAGTAGAGAAA GTAGTAAAAGATGTGAAGGAAAGAAAAGCATCAAGAAATGCAAGTAGGATGGATGATGAATGGTCCTCGACAATGATAAA GAAGATAAAAAGGCTTTGTGAGGAGTGTAGATTTACTGAATATTACATCCCAAAACCAGACTCATCATCATCATGTGAGT GTCTTTGTGAATATTGCCTAGCTGCATCAGCTGTAGAGCCTAAATCCATCAAGACACAAGATGTCCCAATTCCACCGCAA CCTTCAAGTGTCCAGGAGTACGCCTCTCATAAAAAAATTGGGTCTTCATTTTCCTCGAAAGTCCCAACTCCACTGCAACC TCCCAGTGTTGAGGAATATGCCTCTCACAGAAAAGTTGGGTCTTCATTTTCCTCAAAAGTCCCAACTCCACCGCATCCTC CAAGTGTTGAGGAGATGTGTTCTCATAGAAAAGTTGAGTCTTCATTTTCCTTGAAAGTATCGACCCCACCGCAACCTCCA AGTATCGAGGAGTACGCCTCTCGTAAAAAAGTTAGGTCTTTATTCTCCTCAAAAGTCCCAACTCCGCCGCAACCTCCAAG TGTTGAGGAGTACGCATCTCGCCAAGGTCCATGTTTTTTTAATCACTTCTCTTGTTAATTTAATATCTATATCTTAATTA TTCACATCAATCTCTATTTTATTTTAACTAATTTGTTCACGCAGGAGGAGGGAAGAGATCAACTTACACCAACATGCAAG ACATAAATTGTGACGAGTTCATCAGCCGACTTTCAATGGTAAATTCGGTGAAAAGCTCGTATATAGCCTTTTAATTATCA CTGTAAGAATAGTTTCAGATTCTTTTGATTACTCATATTGATTCTAATGACTGCAGCATGCTTTTCTAACTGAAGCTATA CACACACATATATAATATATATATCCTTATCATGTTATTTTCATTTGAAGTGTTTTACATTTTTTTTCTAAATATGAGTT ATGTAAACAGTTTTCCATGACATATCTGTATTATTGCATGGATAGTAAGCCGTTAATTTTTTTAAATAAATTATTTTGGC GGTTACCTATGCTTAAGTGGATCTCTGACAGCAAACTAATTACAAAATCAATTTCAGGTGGAAAATGTCACCTCAATTTC GCTTGATGAAGAGTATTGGGGGCTGATTACTGAGAGGTCTCACGTATTGGATAAAATTGAAATGGACGGAGTTGAAAATG AACGAATCCATGATGATGTTCGGAAATGGCTGAATTAATGAAGTAGAGAAAGTAGTAAAAGATGTGGATGAAAGAAAAGC ATCAAAAAATGCAGGTACGATGGATGATGAATGGTCTTCTACAATGTCCCAACACCGCCGCAACCTTCAAGTGTTGAGGA GTACGCCTCTCGTAGAAAAGTTGGGTCTTCATTTACCTCAAAAGAAGCTCCAAATCAACAGTTGAAGGTGGAAGAAGAAG ATGATGCTTGCCATAAATCTATAAGTTGTTCTTCTACAACTCCACTTACAAAGTCAATCTCTTCTGCAAAGTCTATGTCT TCCAACTCTACGGAAGAAGCGTTTAGTGATGATACTTTTGTAGGCTTACAAGTAACGTCAGGAGACTTTATGTATTTGGG CTCTTGAAATCAAGCTAAAAATATTCTTTTGAATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGAAAGA GAGGCTCTGGTAAAACAACGTTGGTGGAAGCTGAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTGTTAC TGTGTCAGAACAAGCAGATATTGCAAAACTTCAGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATTAAAA GTAAATACAGAAGAGCATCTGCAATAAAATCAGCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGATGTT TCGACAAACTTTGGTCTTCATGATATTGAAGATATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGATCAC ACATGACAAAATGTACTGCAACATGATCAGATGTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCTTGGA AGCTGCTCCAACAATATTCAGGCATAGACAATGACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATTTCTA TGTATAGGGTTACCTCGTGTAATTAAAGATGTTGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAACATT AGACTGTCTAAATCATTCTACAGCCTCCCACCAGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTCACTG CTTCTCTCTTTGATGCTTTAGTCCAAGGAGGATTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCAAGTT TCAGAAGCTCTCGTAAAAGCAATTGAACAATCAAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTTCATG GTGTCTTGATGAATTACTCAGGATTCTTAAGTGTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAAGTGG ATCCCACAAACGTAAGATATGTGAAAGGAAGCTTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGATACG ATACAAGAGTGGACTTCAGCTTTGTTCGAAGTTTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTAAGCAATATA TATCCTTCCAATTATTTTCATTTATTAATCCATAGTTAATATCTAGTCTCTATTTTCAAAAAAAAATTCTAGTCTCTTAG CTAACTTTTTTTTCAATTTAAAAGTTTAAATATCTTTTAAAATGATTTTGTAAATAAGGATTGTCCATATTGTTGGTTAT TCAAGTTTTGTTTCTCGTTTGAATTCAATTTTATATTTTGTGTGACTGAGCTATTGTGAATTTAAATTTATGAGAAACTT GTTTTTGTATGAATTTTGTAGAATTAATTCTATCTAATACTCCCTCTGTTCCTATTTATAAGTCACAAAAAACTAATTCT CTTATATTAAGAAAAATAGTTAGTAATAATAAATTTGTAAAGGAAATGATTAGCTTTCCTAGACTACCCTTATTTACTTT TCTATAATTTTCTCTCTCCAAGTTAATATATCAAAAGTTCATCATCTCTTTCATATTAAATATGAGGGTGAATTTGGAAA AAATTATTTAATGCTTCTTAGATATTAGAAAGTGACTTATATTTAGGAACACATTTTTTTTCAAAAAATGTGACTTATAA TAAGGAATGGAGGGAGTAGAAATTAAGAAAATGAAAACTGTATGCATACATTAATTAAGAGACCGTGTCTAATGTTTATA CTTTTGCAGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAGAGAATATACATCGTTTGCATATTGTAT AAAACACTCTTATGGAATTGAGGGGAGATTTTTGTTCTATTATTACATTAAGAGTTGCAAGAAACAAATGGAGACAACGA TTATATTAATATTGCATGGCTCACAAAAGGCTTGTGATTGGAATGTTCATCTTCAATAGTGAGACTTTCTTTGGAGACTA GAGTTGCTATTGCTATATATATTGAAATTTGAAACCTCAAAAAATGGAACATATATATATAAATCATCAGGTACAGTTGG GTAAAATAATGAAGTTTGTACGAGTATGATTTTTTGAAAAATATACAATAGAAATTTTGAGGAATCATTAATCAAAATTT ATTTAAATTTTTTAAAGTGTCCTGACAATGGATCAA
CDS sequence (LotjaGi2g1v0436500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGAAAGAGAGGCTCTGGTAAAACAACGTTGGTGGAAGCT GAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTGTTACTGTGTCAGAACAAGCAGATATTGCAAAACTTC AGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATTAAAAGTAAATACAGAAGAGCATCTGCAATAAAATCA GCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGATGTTTCGACAAACTTTGGTCTTCATGATATTGAAGA TATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGATCACACATGACAAAATGTACTGCAACATGATCAGAT GTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCTTGGAAGCTGCTCCAACAATATTCAGGCATAGACAAT GACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATTTCTATGTATAGGGTTACCTCGTGTAATTAAAGATGT TGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAACATTAGACTGTCTAAATCATTCTACAGCCTCCCACC AGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTCACTGCTTCTCTCTTTGATGCTTTAGTCCAAGGAGGA TTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCAAGTTTCAGAAGCTCTCGTAAAAGCAATTGAACAATC AAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTTCATGGTGTCTTGATGAATTACTCAGGATTCTTAAGT GTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAAGTGGATCCCACAAACGTAAGATATGTGAAAGGAAGC TTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGATACGATACAAGAGTGGACTTCAGCTTTGTTCGAAGT TTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAG AGAATATACATCGTTTGCATATTGTATAA
Protein sequence (LotjaGi2g1v0436500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHCKMIDTIQLDYSEREALVKQRWWKLRYLRMKIFFHLIVSVTVSEQADIAKLQNQIAHQLNLKLQAIKSKYRRASAIKS ALLKSVDKVLVIFDDVSTNFGLHDIEDIGIPDPSKQCKVLLITHDKMYCNMIRCNPWIPLHPLSNEDAWKLLQQYSGIDN DSPSDLINVAREVAFLCIGLPRVIKDVVSALHKKDTKHWKETLDCLNHSTASHQIFISFRGKDTRDDFTASLFDALVQGG FKVFKDDEQLRSGDQVSEALVKAIEQSRCSIVVLSENYAESSWCLDELLRILKCRKKMKQLVLPIFYKVDPTNVRYVKGS FGEAMTKKKERFKEDTIQEWTSALFEVSDLSGRDYKTGRSQVVFIKEIVQYVRENIHRLHIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 19 | 136 | 118 | 3.7E-8 | – | |
| SUPERFAMILY | 31 | 207 | 177 | 1.27E-21 | ||
| Pfam | 36 | 212 | 177 | 1.0E-22 | ||
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| SUPERFAMILY | 209 | 352 | 144 | 1.44E-37 | ||
| Gene3D | 210 | 380 | 171 | 1.7E-61 | ||
| ProSiteProfiles | 211 | 350 | 140 | 26.169 | ||
| SMART | 212 | 350 | 139 | 3.3E-39 | ||
| Pfam | 213 | 372 | 160 | 8.5E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0436500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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