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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436500 |
| Transcript ID | LotjaGi2g1v0436500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G16860.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3S288|I3S288_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0436500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93279470..93284687) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAATATCTAGTCTAGTCTAACACAAGGTGGGAAAGAAGCCACGGACGCAATGACAGTCAAGCCCGCAGAGTTAAA AGTGAAGCTGCAAAAACTGCTTACAAAATGAACAGAGGAGTTGATATGTATTAATGAAAAGCAGATTCAATTGCAGAACG ATCTTTAATGCGTCATCTCCTCCCCTGTTCTCTCAAAATCAGATTCATGGTGTAAGGTTTTGCAACTTCTCCTTCAAATC TTCTTAGCTGAGCTTGTTGAAGGTATTGTTTTTCTTTTATTTGAAACGAATGACAAATTGCACTCTATATTTGTGCAAGG GAAAATCGATTTTGTAGAATTAGGTAGTAGCTACCCAAATATGCTGTTGGGGAGTTTTACCGTGAACATTATTGTTAAAA ATTTCATCAATCTATGAATCATGTTTCTACAATTTACATTTGGTATTCGTTATTTACAACATGATTTTTATGTACTAAAA TTTATTTATTTACAGAGAACTTCTTAACATATGAACCATATTTTTTAAAGAGTTTTGATATGTTCACATCTCACTTTTTT CTCTTATATCACTTTTTTCTTCTTCTCCTTTCTTTTCTTGTATTTGGGATTAGCACCCCTTGTGCTAAATTTGAATGCAA TTCTTTGTTCTATCAAAAAAAAAATTCACAATTTTTTCTTTCTATCTTTCTTCATTATTTAATCGCCCATTTTTCTTCTT TTAGTCCACGGTACAATTTTTTTCCAAGGTAGGTCCACGTTTTAGACTTGAGAATTTCTGACGCGCAACTTATAGTTGAC TTTCTAGCTAGTTGCGGCATTTAGGCCAATCAAATCCACAAAGAGTATGCTAATTAAGATTTACATTCACTTCTCTTGTT TAATTTCTTTATCTTTTTCACATCAAATCTCTATTTTTTGTTTTTAACTAATTTGTTTACACAGGAGGAGGGAAGAGATC AACTTACATAGACATGTTTTCAGGCATAAATTTTGACGAGTTCAGCAGACGACTTTCAAAGGTAAATCTGGTGAAAAGCT CATATATAGCCTTTTAATCATCACTGTAAGAATAGTTAAGATTTTTTAAAATTATTTTGATTCTAATGACTGCAACATGC TTTTCTAACTTAAGCTATCTATATATCCTTATCATGTTATGGTCATTTGAAGTTTTTTTTTTATTGGCCAAATTTCCCTT CCAAGGTTCGTTCGAACATTGAACATTCCCTTCCCTGACCCTTATGCATGTCCTCATCTTTTATCACTTGGGCTATCATT TAGAGACAATCATTTGAAGTGTTGTACATTTTTTTTCTAACTATGCTTAAGTGGATCTCTGAGACCAAACTAATTAAGAA ATCAATTTCAGATGAACATTAATGCCGCCTCAATTTCGCTGGATGAAGAGTATCGGGGGCTGATTAGTAAGAGGTCTTTC GTATTGAGTAAAATTGAAACGGACGGAGTTGAAAATGAACGAATCCATGATGATGTTCGGAAGTGGCTAAATGAAGTAGA GAAAGTAGTAAAAGATGTGAAGGAAAGAAAAGCATCAAGAAATGCAAGTAGGATGGATGATGAATGGTCCTCGACAATGA TAAAGAAGATAAAAAGGCTTTGTGAGGAGTGTAGATTTACTGAATATTACATCCCAAAACCAGACTCATCATCATCATGT GAGTGTCTTTGTGAATATTGCCTAGCTGCATCAGCTGTAGAGCCTAAATCCATCAAGACACAAGATGTCCCAATTCCACC GCAACCTTCAAGTGTCCAGGAGTACGCCTCTCATAAAAAAATTGGGTCTTCATTTTCCTCGAAAGTCCCAACTCCACTGC AACCTCCCAGTGTTGAGGAATATGCCTCTCACAGAAAAGTTGGGTCTTCATTTTCCTCAAAAGTCCCAACTCCACCGCAT CCTCCAAGTGTTGAGGAGATGTGTTCTCATAGAAAAGTTGAGTCTTCATTTTCCTTGAAAGTATCGACCCCACCGCAACC TCCAAGTATCGAGGAGTACGCCTCTCGTAAAAAAGTTAGGTCTTTATTCTCCTCAAAAGTCCCAACTCCGCCGCAACCTC CAAGTGTTGAGGAGTACGCATCTCGCCAAGGTCCATGTTTTTTTAATCACTTCTCTTGTTAATTTAATATCTATATCTTA ATTATTCACATCAATCTCTATTTTATTTTAACTAATTTGTTCACGCAGGAGGAGGGAAGAGATCAACTTACACCAACATG CAAGACATAAATTGTGACGAGTTCATCAGCCGACTTTCAATGGTAAATTCGGTGAAAAGCTCGTATATAGCCTTTTAATT ATCACTGTAAGAATAGTTTCAGATTCTTTTGATTACTCATATTGATTCTAATGACTGCAGCATGCTTTTCTAACTGAAGC TATACACACACATATATAATATATATATCCTTATCATGTTATTTTCATTTGAAGTGTTTTACATTTTTTTTCTAAATATG AGTTATGTAAACAGTTTTCCATGACATATCTGTATTATTGCATGGATAGTAAGCCGTTAATTTTTTTAAATAAATTATTT TGGCGGTTACCTATGCTTAAGTGGATCTCTGACAGCAAACTAATTACAAAATCAATTTCAGGTGGAAAATGTCACCTCAA TTTCGCTTGATGAAGAGTATTGGGGGCTGATTACTGAGAGGTCTCACGTATTGGATAAAATTGAAATGGACGGAGTTGAA AATGAACGAATCCATGATGATGTTCGGAAATGGCTGAATTAATGAAGTAGAGAAAGTAGTAAAAGATGTGGATGAAAGAA AAGCATCAAAAAATGCAGGTACGATGGATGATGAATGGTCTTCTACAATGTCCCAACACCGCCGCAACCTTCAAGTGTTG AGGAGTACGCCTCTCGTAGAAAAGTTGGGTCTTCATTTACCTCAAAAGAAGCTCCAAATCAACAGTTGAAGGTGGAAGAA GAAGATGATGCTTGCCATAAATCTATAAGTTGTTCTTCTACAACTCCACTTACAAAGTCAATCTCTTCTGCAAAGTCTAT GTCTTCCAACTCTACGGAAGAAGCGTTTAGTGATGATACTTTTGTAGGCTTACAAGTAACGTCAGGAGACTTTATGTATT TGGGCTCTTGAAATCAAGCTAAAAATATTCTTTTGAATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGA AAGAGAGGCTCTGGTAAAACAACGTTGGTGGAAGCTGAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTG TTACTGTGTCAGAACAAGCAGATATTGCAAAACTTCAGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATT AAAAGTAAATACAGAAGAGCATCTGCAATAAAATCAGCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGA TGTTTCGACAAACTTTGGTCTTCATGATATTGAAGATATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGA TCACACATGACAAAATGTACTGCAACATGATCAGATGTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCT TGGAAGCTGCTCCAACAATATTCAGGCATAGACAATGACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATT TCTATGTATAGGGTTACCTCGTGTAATTAAAGATGTTGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAA CATTAGACTGTCTAAATCATTCTACAGCCTCCCACCAGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTC ACTGCTTCTCTCTTTGATGCTTTAGTCCAAGGAGGATTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCA AGTTTCAGAAGCTCTCGTAAAAGCAATTGAACAATCAAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTT CATGGTGTCTTGATGAATTACTCAGGATTCTTAAGTGTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAA GTGGATCCCACAAACGTAAGATATGTGAAAGGAAGCTTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGA TACGATACAAGAGTGGACTTCAGCTTTGTTCGAAGTTTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTAAGCAA TATATATCCTTCCAATTATTTTCATTTATTAATCCATAGTTAATATCTAGTCTCTATTTTCAAAAAAAAATTCTAGTCTC TTAGCTAACTTTTTTTTCAATTTAAAAGTTTAAATATCTTTTAAAATGATTTTGTAAATAAGGATTGTCCATATTGTTGG TTATTCAAGTTTTGTTTCTCGTTTGAATTCAATTTTATATTTTGTGTGACTGAGCTATTGTGAATTTAAATTTATGAGAA ACTTGTTTTTGTATGAATTTTGTAGAATTAATTCTATCTAATACTCCCTCTGTTCCTATTTATAAGTCACAAAAAACTAA TTCTCTTATATTAAGAAAAATAGTTAGTAATAATAAATTTGTAAAGGAAATGATTAGCTTTCCTAGACTACCCTTATTTA CTTTTCTATAATTTTCTCTCTCCAAGTTAATATATCAAAAGTTCATCATCTCTTTCATATTAAATATGAGGGTGAATTTG GAAAAAATTATTTAATGCTTCTTAGATATTAGAAAGTGACTTATATTTAGGAACACATTTTTTTTCAAAAAATGTGACTT ATAATAAGGAATGGAGGGAGTAGAAATTAAGAAAATGAAAACTGTATGCATACATTAATTAAGAGACCGTGTCTAATGTT TATACTTTTGCAGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAGAGAATATACATCGTTTGCATATT GTATAAAACACTCTTATGGAATTGAGGGGAGATTTTTGTTCTATTATTACATTAAGAGTTGCAAGAAACAAATGGAGACA ACGATTATATTAATATTGCATGGCTCACAAAAGGCTTGTGATTGGAATGTTCATCTTCAATAGTGAGACTTTCTTTGGAG ACTAGAGTTGCTATTGCTATATATATTGAAATTTGAAACCTCAAAAAATGGAACATATATATATAAATCATCAGGTACAG TTGGGTAAAATAATGAAG
CDS sequence (LotjaGi2g1v0436500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTGCAAGATGATAGATACCATTCAATTGGATTATTCGGAAAGAGAGGCTCTGGTAAAACAACGTTGGTGGAAGCT GAGATACCTGAGGATGAAAATATTTTTTCACTTAATTGTGTCTGTTACTGTGTCAGAACAAGCAGATATTGCAAAACTTC AGAATCAAATCGCTCACCAGTTGAATTTGAAACTTCAGGCAATTAAAAGTAAATACAGAAGAGCATCTGCAATAAAATCA GCATTATTGAAAAGTGTGGATAAAGTTCTTGTCATCTTTGATGATGTTTCGACAAACTTTGGTCTTCATGATATTGAAGA TATTGGCATTCCTGATCCTAGTAAACAATGCAAGGTCCTTTTGATCACACATGACAAAATGTACTGCAACATGATCAGAT GTAACCCTTGGATTCCTCTGCATCCCTTATCTAATGAGGATGCTTGGAAGCTGCTCCAACAATATTCAGGCATAGACAAT GACTCCCCATCCGACCTGATCAACGTGGCACGTGAAGTTGCATTTCTATGTATAGGGTTACCTCGTGTAATTAAAGATGT TGTGTCTGCTTTACATAAAAAGGACACTAAGCACTGGAAAGAAACATTAGACTGTCTAAATCATTCTACAGCCTCCCACC AGATTTTCATCAGCTTTAGAGGGAAAGATACCCGCGATGATTTCACTGCTTCTCTCTTTGATGCTTTAGTCCAAGGAGGA TTCAAGGTCTTCAAAGACGATGAGCAATTGCGGAGCGGGGACCAAGTTTCAGAAGCTCTCGTAAAAGCAATTGAACAATC AAGGTGCTCAATCGTTGTCTTATCAGAAAACTATGCAGAATCTTCATGGTGTCTTGATGAATTACTCAGGATTCTTAAGT GTAGGAAAAAGATGAAACAACTGGTTTTGCCAATCTTCTACAAAGTGGATCCCACAAACGTAAGATATGTGAAAGGAAGC TTTGGGGAAGCCATGACGAAGAAGAAAGAAAGGTTTAAAGAGGATACGATACAAGAGTGGACTTCAGCTTTGTTCGAAGT TTCCGACTTGTCTGGAAGGGACTACAAGACTGGCCGGTCCCAAGTTGTGTTTATCAAAGAGATTGTACAATATGTCCGAG AGAATATACATCGTTTGCATATTGTATAA
Protein sequence (LotjaGi2g1v0436500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHCKMIDTIQLDYSEREALVKQRWWKLRYLRMKIFFHLIVSVTVSEQADIAKLQNQIAHQLNLKLQAIKSKYRRASAIKS ALLKSVDKVLVIFDDVSTNFGLHDIEDIGIPDPSKQCKVLLITHDKMYCNMIRCNPWIPLHPLSNEDAWKLLQQYSGIDN DSPSDLINVAREVAFLCIGLPRVIKDVVSALHKKDTKHWKETLDCLNHSTASHQIFISFRGKDTRDDFTASLFDALVQGG FKVFKDDEQLRSGDQVSEALVKAIEQSRCSIVVLSENYAESSWCLDELLRILKCRKKMKQLVLPIFYKVDPTNVRYVKGS FGEAMTKKKERFKEDTIQEWTSALFEVSDLSGRDYKTGRSQVVFIKEIVQYVRENIHRLHIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 19 | 136 | 118 | 3.7E-8 | – | |
| SUPERFAMILY | 31 | 207 | 177 | 1.27E-21 | ||
| Pfam | 36 | 212 | 177 | 1.0E-22 | ||
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| PANTHER | 207 | 376 | 170 | 3.5E-61 | – | |
| SUPERFAMILY | 209 | 352 | 144 | 1.44E-37 | ||
| Gene3D | 210 | 380 | 171 | 1.7E-61 | ||
| ProSiteProfiles | 211 | 350 | 140 | 26.169 | ||
| SMART | 212 | 350 | 139 | 3.3E-39 | ||
| Pfam | 213 | 372 | 160 | 8.5E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0436500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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