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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0441300 |
| Transcript ID | LotjaGi2g1v0441300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|P71404|CLPB_HELPY Chaperone protein ClpB; TrEMBL-Plants: tr|I3SRK6|I3SRK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0441300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93763366..93765293) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTTGCTTTGAACAGAT TTTACACTCTAAGTCCTATGTCATTGATGAAGTTCCTATGTATCTTACCATGGCAAATTATTTTTTGTAGGTTCAGCTGA CAGCTGTTGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGTGAGTG ATCTGTAACTTTGGACTATTCTAACATCTTGTCTTATAATGTTCTATAAGTTCTTATCCAAAAGTAGTTAGCTTTTAGTT ACCTTTCTTCCTGGGTTTGGGTATTTCTCTTTTTATCAGATTACCAAAGATCAGATGCTAGCAATAGTTTTGGCGTCTAT GAATGTGTGGTTGTTTGAGTAGTTGGGACTAGTGAAGTTTAATTTCCGTTTTTCTTTCATAGTTCTCCATGTGTCTCCTT AATAGTGAATAGTGATTTTCTTCCTTCTGTAATAGAACCAGCTACTCAATATTAGAGTTGAAATTCAGGGTTTAATCTTT ACCTTACCCTTCCTTATTTGTGGGTAATTCTTACATCTCTTAATAGAAGTCGGCGTTTTCTAAAAATAATTCTGGTGTTT TTATTGAATACAGGTTGGAAAATATTGATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAACTGTA CTTACCGTCTAAATCTCCATTATTTTGCTCTGCATCAATTTGTGGGTCACTATAATGTTTCCCTGACAGGCTTTGTACTA ATTTGTGATATGCTTGTGATTCTTGTCCATAGAGATGGGCGGCACTTCCGGGAGAATCTCCACCTATAGATGATACTGAA GTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGTTTGTACAGGTAAGGTAGT TATTTGTTCTTTAGATGATACTGAAAGTTTTTTTCCATCTTGATAGATTTCTAGAGAAAGCTCTCATGCCATGTGATGAA CCAATGCTTTCATAGTTCTTGCCATTAGAAGGCTCGTGTTTGGGATTTACCGATAGTTCAATACCTTTAACAAAAATAAA TATGCATGCGCTGTTGGCTCTATCAAGTATATTGATTCTTAAGCTTCGAGATGATTGGTTTTTCATTTACAATTGCTGAT GAAGGTGGAAAATTGCAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTACCGAGT TTCAAGCGTGAAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCAAGTAG TTCTAAGATACAGGTATCTCTAAGTTAACCTAGTTTGTTCATTGGTTGTTTTTAGGCTTAATTGTATTTTTTATCCTTAA TAGTTTTACAATTGCTCCAATTTACTCCCCTGCTTTTAAAATTAAGAAAACATGGTCATGACATTAACTTATCATCCAAT AACTAAACGGAAGACACTGACATAGATTAGAACTTTTGACCTGACAAGTGACAGAATGGTCTTAATTTGCCATTCACATA AACCTTTGTGATCCAATTCCATCGAATGGTAGGTTAAAGTCAAGACCATATTTGTCCAATTTTTAAAGTAAATTGAACTA GATTGAAGCAATTGAAAGTTGAAATTATGAAGTCCATACAGTCTGAGCTAAATTATTTACATCCTTATTTTATTTACAGT CAACATCTAATTAGTAATTACAGGCTACACATATTTTGATCATATTAACCTATGTAGTTCCCTCCCTTATTATTCATCTT TCAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTCAATTG ATATGTAG
CDS sequence (LotjaGi2g1v0441300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAATTGTTTTCTTTTCGGGGGCTGCCCTGGAGCCTCAGTAATGGTGGTCAGGAAAAGGTTCAGCTGACAGCTGT TGAAGTAGAGTCACTTCGATCAGAACTAGCTGATTTAGAAGAGAGGGAAGCTCAATTAAAAGCTCAGTTGGAAAATATTG ATGAAATATTGCGGTCATCTCGTCTATCTGGCTATTTGTACATTCGAACTAGATGGGCGGCACTTCCGGGAGAATCTCCA CCTATAGATGATACTGAAGTAGATGATTGGGTTCCTCGCTTTGTTGTTCTTCAGGGTGCATGTCTATTCTTATATTTGGT TTGTACAGATCTAAGTCCTCAGGACTCAACGCTTCTATCTGACATTATTGAAGTAGATCAGTTACCGAGTTTCAAGCGTG AAGATGATGAGATGCGATATGCCTTTTATATTTTAACTCGTCATGGATTACGATATGAATGCTCAAGTAGTTCTAAGATA CAGGTGGACTCATGGTTATCAGCTTTAAAATCTGACTGCAAATTGGAATCTGATACAGCAACTCCCAATGGTTCAATTGA TATGTAG
Protein sequence (LotjaGi2g1v0441300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKLFSFRGLPWSLSNGGQEKVQLTAVEVESLRSELADLEEREAQLKAQLENIDEILRSSRLSGYLYIRTRWAALPGESP PIDDTEVDDWVPRFVVLQGACLFLYLVCTDLSPQDSTLLSDIIEVDQLPSFKREDDEMRYAFYILTRHGLRYECSSSSKI QVDSWLSALKSDCKLESDTATPNGSIDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 181 | 181 | 2.0E-104 | – | |
| PANTHER | 1 | 181 | 181 | 2.0E-104 | – | |
| Coils | 22 | 59 | 38 | - | – | |
| Gene3D | 44 | 173 | 130 | 2.4E-9 | ||
| SUPERFAMILY | 53 | 171 | 119 | 2.91E-12 | – | |
| ProSiteProfiles | 59 | 174 | 116 | 8.535 | ||
| SMART | 60 | 176 | 117 | 0.0076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0441300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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