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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0443500 |
| Transcript ID | LotjaGi2g1v0443500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | THUMP domain-containing protein 1 like; TAIR: AT5G12410.1 THUMP domain-containing protein; Swiss-Prot: sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1; TrEMBL-Plants: tr|G7K999|G7K999_MEDTR THUMP domain protein; Found in the gene: LotjaGi2g1v0443500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93907173..93911239) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTTGCTTCGAACTAACCTGTTTTGTTGTGTGTCATGGCGTCCGAGGGTAAAGGCGATGCCGCCGCCGCCGGTGGG AGGAAGAGAAAACGCTACCTCCCTCACAATGTCTCTGCTCTGTTCATCACTTTTCCCTCACTCTCTCTCTGTTATTCGAT TACTGCAGTGCTAACCCTGTTTTGTATGAAAATTTTCAGAAGCCGGTGAAGAAGGGTTCGTATCCATTACACCCTGGAGT ACAAGGGGTTTTCATCACTTGTGAAGGAGGAAGGGAACACCAAGCCTCACGTGAAGCTCTCAATATTCTTGAATCCGTAA GGCACCATCTCAATTTTATTTTATCTCTTTCATTCTGTTTCCAACTGCAATTAGTATATTCAGCTGGAAATCAATCGATT AGTATATTCCTTTGTTTAAGTTGTTGGAAGAAGAGGATTACAGAGCGCGCAGAGAGAATGAAATAATATACTGAATTTGA AATTTGGATTGCACTATGGTTCTGCTTACACAGAAGGAATCTCTTGCTGAGTTGCTTCTGTGGAAGGCTCATGTTTCAGT TTGCCGTTTCCTTAAAAGTAGGGGCCAAGAGATTAAGAGATGAGCTTTATTTGAAGCATTATATGAAAAATACATTATTG AATTTTCTTCAGCATTTTTTAGGATATACCAAGTGATTCTTAATGATGCCAATTTATACAAGTGCAAGTTTCTGTTAATG CAAGTTGTTTTTATGTTCCTTTCGTTGTTTTTATGCCTTTTGAGGAAGACAGAGATTGTTCATTGTAGATTTATTCTTAA TCTTTTCCTTTTCTTCTTTTTCTTTGTTATTCAGCTGGAATAATTTAGGTTTGAATGTTTTCTCATTCGAATTACTCTTG ATTTGTATTTCACATTTAGTGGGATGGTATTCTCATTTTATCTTCTCAGTAAAGTGATATCATGCTTTTGATTTTTATTG CAGTTTTATGAAGACCTAGTTGATGGGGAACACTTAAGTGTGAAAGAGTTACTTAATAGGCCTAAAAATAAAAAAATTAC GTTTGCAGATTCTGACTCTTCTAGTAGTGGTGATGATGAGGATGATGAGGAGGAGGTGCAAGTTCAGGTTGGGGAGGGAG ACGAGGCGAATGGGGACAAAAAGCTGAAACTGGATAGTTCTGTTGATGAGCATGCCGGTATTGGTGAAAAAGCTGTGGGA GCGAATGGGGCCGAAAAGCCGAAACTGGATAGTTCTGTTGATGAGAATGCGGGTATTGGTGGAAAAACTGAGGGAGACGA GGCGAAAGGAGACGAAAAGCCGAAACTGGATAGTTCTGTTGATGAGGATGCCGGTATTGGTGAAAAAGCTGAGGGAGATG AGGCAAATGGGGACAAAATGCCAAAAATGGATAGTTCTGTTAATGAGAATGCCGGTCATGACAATGAAATTGGAGGAAAA GAAAATCCTCATAAAATTGATGATGTGCATGCCGCCGCGGGAAATAAAACTGATGATAATGAAGGAGACAATGACAATAT TAAGACTAAGACAGCTAATGAGCTACCAGTTGTGAAACAGTGCTGCAAAACAAATGTTCCAGTGCAGGATTCAAGTAATA AAGTGGAGAAGTCTATTGATACGTTAATTGATGAAGAACTCAGAGAATTGGGAGACAAGAAAAAGGTGACTTAATATGAT CAGTTTTCTGTATATTATTGTATTGTTACTGTCAAAAGCTTAATTCACAGATCTTATGTTTCTTATATTTTCTGGCTTCA CTCAATCATTTTTGTGGCCTATCTGATGATAACGGTTTTTCTCATAATTTTCTACACATGCAACTAATGCTGAGGTCTTT GGAGTTTGAAAATACAAAGATAAAAATCCTCCTATCTTTGTTTCTGTCATTCTTCTAATGGTAACAGCATACATACTGCA TTCTTTTTATTGTCTCCCTGCTTTCTGAGTTTTCTGCCACCTATCCTTTTTATGACCGAGTAGATGGAAAATTTTGTGTT ACATATTACCCTCTAGATTTCAAAATAGTTCTGGAACAACATATTTACTTGTTGACTTCTTCATCAACGGTGTTCCAGTT TGGGGACTATTATTGACTTTAGGAGTAGAATCATCTGGTTATCTAAAACACCACTTTCAGCTTTTACTAAGTAATTTGTA GCAGGATCTCCCTTTATATTTATCATTTTTCTTCACGAGATATTAACTTTTTGGGTGAAGAGTAATTTTTATTTTATAGC AAAACAATACACCTATTGCCTAATTCTTTAGTTCGTGCATTGGATTATAACTTGGGGACACTGGGGCTAATACTTGCCCC TACTCTTTGTTTCACCTTTCCTCCTTCATTTGTGTATTTATTCTAAGAGACTTTTTTTATCTACACAGAGGCGCTTTGTA AAGCTCGAATCAGGTTGTAATGGTGTAGTATTTATTCAAATGCGGAAGAAAGATGGAGATAAAAGTCCCAAGGATATAGT TCATCGAATAGTGACATCAGCAGCATCGACAAGAAAACATATGTCAAGGTATATAGTTTTAGTTTCTATTACAAGAAAAA CGAACATGCACACAGAAAACACTGATGCAGTGTTGATTACCTGTAGGTTTATTTTGAGAATGTTGCCAATCGAAGTGTCC TGTTATGCTTCAAAGGAGGAAATTTCAAGAGCAATCAAACCTCTTGTGGAACAGAATTTTCCTGTGCCAACTCAAAAACC ACTCAAGGTAATATGGTGTATTAGTATCCCTTAGCTTTCTTTTGAACATGCATTCCAGATTACCCAAATGCTGCTAGTGT TATTATTGTGAATTAACAAAGCTCAGTAGGTTTATTAATAGTACAATGAACTATTTAACAATTCTTGGAAAGTTTGCTTT ACATTTTCTTTTGGAATGCTGCTAATGGCAACACTCTTGGAAAGCTTGCTTTACTATCTTTAAAAGTTTTTTTAACTCTC TTTTTAAATGCACTATTATGTATCTGATTACTTGTCCCTACATTCAAGTGTTTGTCAACAAAATTTTATGCTAAGTTCTT TCTATGACAGAATCCTTTTTTTGTGTAGCTTGACCAGTTTATTTGTGTGCAGTTTGCTGTAATGTATGAAGCCAGGGCAA ATACTGGTATTGACAGGATGGAAATCATTGATGCTGTGGCGAAGTCAGTTCCTGGACCCCATAAAGTTGATCTAAAAAAT CCTGATAAAACCATAGTAGTTGAAATTGCTAGGGTAAGAAAGCCATGCTGTTGGCCATGCACCTTACTATGTTTTGTATC AGTTTGAATTAGAACTAATGCATCTTCTTTTACTTGACAGACTGTATGCCTGATCGGGATCATTGAGAAATATAAGGAAT TATCAAAGTACAATCTGAGGGAGTTGACATCAAAGTAAAGTCTGAGCCTTCCAGAAACCCTGTATGCTTCCTGTATGCTT ATTGTTATGGTGAAATTGTAATCGTTAACTTATTTACACTTGACTTTCAACTGGCACTTGGAAAGTGGGGTTTTGGAAAG TGCTCAATTGCTCTTGCAACTAGTTCTTTGAATGTAATCCAGTTCCCACAGCTCAAACGAGAAATTATTACGTAGCTAAT GCCTTAGCATTGAGAATATTACTCATAAAAGTTTTAGAATTTCTCCGTGTTAATTATGCTTTGAAACTATCCCAGAAATT TGCAATGTTAATTATGCTTTGAAACTGATCCAGATTTTCCTTTCATGCGGAAACTTCCTCATGTTTTCCTGTGTTACATT TTTATGTCAATTTATGTCTTCATATGTTTTCCATTTGATATTGTCACGTGACATGAATCTTTAGTTTGGGATACCTAATT AACATAAAGTCCGTAGTTGTTTTTACTGGACTCAGTGGGATTTATTTTTTTGTTTTGAAAAATACCAGTGGTTCATTGAG TACCACAGTTGTTGGTTTCTTTTGTTCTAGACTCTCAATAAATTTATTTCAAGTGTAATTAAAAAAACTCTCAATAAGTG CAAAGTCACATAGAGGACACTAATTTGAGTTGGGTTAACCCACTTAAGGGGACAAAATAGATGTTTA
CDS sequence (LotjaGi2g1v0443500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCGAGGGTAAAGGCGATGCCGCCGCCGCCGGTGGGAGGAAGAGAAAACGCTACCTCCCTCACAATAAGCCGGT GAAGAAGGGTTCGTATCCATTACACCCTGGAGTACAAGGGGTTTTCATCACTTGTGAAGGAGGAAGGGAACACCAAGCCT CACGTGAAGCTCTCAATATTCTTGAATCCTTTTATGAAGACCTAGTTGATGGGGAACACTTAAGTGTGAAAGAGTTACTT AATAGGCCTAAAAATAAAAAAATTACGTTTGCAGATTCTGACTCTTCTAGTAGTGGTGATGATGAGGATGATGAGGAGGA GGTGCAAGTTCAGGTTGGGGAGGGAGACGAGGCGAATGGGGACAAAAAGCTGAAACTGGATAGTTCTGTTGATGAGCATG CCGGTATTGGTGAAAAAGCTGTGGGAGCGAATGGGGCCGAAAAGCCGAAACTGGATAGTTCTGTTGATGAGAATGCGGGT ATTGGTGGAAAAACTGAGGGAGACGAGGCGAAAGGAGACGAAAAGCCGAAACTGGATAGTTCTGTTGATGAGGATGCCGG TATTGGTGAAAAAGCTGAGGGAGATGAGGCAAATGGGGACAAAATGCCAAAAATGGATAGTTCTGTTAATGAGAATGCCG GTCATGACAATGAAATTGGAGGAAAAGAAAATCCTCATAAAATTGATGATGTGCATGCCGCCGCGGGAAATAAAACTGAT GATAATGAAGGAGACAATGACAATATTAAGACTAAGACAGCTAATGAGCTACCAGTTGTGAAACAGTGCTGCAAAACAAA TGTTCCAGTGCAGGATTCAAGTAATAAAGTGGAGAAGTCTATTGATACGTTAATTGATGAAGAACTCAGAGAATTGGGAG ACAAGAAAAAGAGGCGCTTTGTAAAGCTCGAATCAGGTTGTAATGGTGTAGTATTTATTCAAATGCGGAAGAAAGATGGA GATAAAAGTCCCAAGGATATAGTTCATCGAATAGTGACATCAGCAGCATCGACAAGAAAACATATGTCAAGGTTTATTTT GAGAATGTTGCCAATCGAAGTGTCCTGTTATGCTTCAAAGGAGGAAATTTCAAGAGCAATCAAACCTCTTGTGGAACAGA ATTTTCCTGTGCCAACTCAAAAACCACTCAAGTTTGCTGTAATGTATGAAGCCAGGGCAAATACTGGTATTGACAGGATG GAAATCATTGATGCTGTGGCGAAGTCAGTTCCTGGACCCCATAAAGTTGATCTAAAAAATCCTGATAAAACCATAGTAGT TGAAATTGCTAGGACTGTATGCCTGATCGGGATCATTGAGAAATATAAGGAATTATCAAAGTACAATCTGAGGGAGTTGA CATCAAAGTAA
Protein sequence (LotjaGi2g1v0443500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEGKGDAAAAGGRKRKRYLPHNKPVKKGSYPLHPGVQGVFITCEGGREHQASREALNILESFYEDLVDGEHLSVKELL NRPKNKKITFADSDSSSSGDDEDDEEEVQVQVGEGDEANGDKKLKLDSSVDEHAGIGEKAVGANGAEKPKLDSSVDENAG IGGKTEGDEAKGDEKPKLDSSVDEDAGIGEKAEGDEANGDKMPKMDSSVNENAGHDNEIGGKENPHKIDDVHAAAGNKTD DNEGDNDNIKTKTANELPVVKQCCKTNVPVQDSSNKVEKSIDTLIDEELRELGDKKKRRFVKLESGCNGVVFIQMRKKDG DKSPKDIVHRIVTSAASTRKHMSRFILRMLPIEVSCYASKEEISRAIKPLVEQNFPVPTQKPLKFAVMYEARANTGIDRM EIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGIIEKYKELSKYNLRELTSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 10 | 456 | 447 | 2.3E-117 | ||
| PANTHER | 10 | 456 | 447 | 2.3E-117 | – | |
| MobiDBLite | 83 | 228 | 146 | - | – | |
| MobiDBLite | 96 | 112 | 17 | - | – | |
| MobiDBLite | 116 | 134 | 19 | - | – | |
| MobiDBLite | 162 | 202 | 41 | - | – | |
| CDD | 298 | 440 | 143 | 1.68443E-47 | ||
| ProSiteProfiles | 334 | 440 | 107 | 22.479 | ||
| Pfam | 340 | 438 | 99 | 1.2E-13 | ||
| SMART | 348 | 440 | 93 | 8.6E-11 | ||
| Gene3D | 357 | 441 | 85 | 1.6E-24 | – | |
| SUPERFAMILY | 359 | 439 | 81 | 5.58E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | TRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. |
Expression pattern of LotjaGi2g1v0443500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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