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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0444200 |
| Transcript ID | LotjaGi2g1v0444200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|K7LEH5|K7LEH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0444200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93959733..93963655) extracted from Lotus japonicus Gifu genome v1.2.
CAACGCTTATCAGAAACAACTGGGTGACTGTCGATCCATTCGCAATTTCGCACAAACAGAAACAACTGTGTGTTCCTACG ATGTTGTCGTCGTTCAGAATCTCTCTGTTTCCCTCACTCTCAAGAACCCTTCACTGTCACTCTCGTAATGCTCCTTCCAA ATTCAATGTTGGTGATGCAATCTCCTCGTTCAATCGCATGCTCCAAATGCGTCCTTCTCCACCCATTATCGAATTTAACA AGTTTTTTACTTCCCTCGTCAAGACGAAGCATTACGCCACCGCCGTTTCCCTTTCTCAACAAATGGATTTCAGGAGAGTT ATGCCTGACTTATTCACTTTCAACATCTTGATCAATTGTTACTGCCACCTAGGTCAAATTACTTCTGCTTTTTCTGTACT CTGCAATATTTTCAAGAGGGGTTATCAGCCTGATACCATCACCTTTAATACAATTATCAAAGGTCTCTGTCTTCAAGGTG AGGTTCATAGAGCACTGTGCTTTCATGATGAGATTGTAGCACGGGGGTTTCTGTTGGATCAGGTTAGTTACGGGACCTTA ATCAACGGGTTATGTAAAATTGGACATACAGGACCTGCACTGCAATTGCTCAGACAGATCCAGGGAAAATTGGCTCAACC TGATGTGGTAATGTACAGCACAATCATTGATAGTTTATGTAAAGATAAACTTGTAAATGATGCCTACAATTTATATTCTG AAATGCTCGCCAAAAGAATTTCACCTGATGTTGTCACTTACACTACGCTAATATCTGGATTTTGCATTGTGGGTCAATTG AAAGAAGCAGTTGGTTTGTTAAATCAAATGGTAGTGAAAAGCATCAATCCAGATGTTTATACCTTTAGTATATTAGTTGA TGCTCTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTGTCATGATCAAAGGAGGGGAAAAACCTGATG TTGTTACTTATAGTTCTTTGATGGATGGGTATTGTTTAGTTAATGAAGTAAACAAGGCTGAAGATATATTTAACACCATG ACCCGAATGGAACTGGCTCCTGATGTTCAGAGTTATAGTATCATGATTAACGGATTATGTAAGATTAAAATGGTTGATGA TGCCTTGAATCTATTTAAACAAATGCATACTGAGAATATTACTCCTAATGTTGTAACTTACAGTTCTCTTATAGATGGTT TGTGCAAGTCTGGGAGAATCTCTGATGCTTGGGAGCTTGTTAATGAGATGCACTCTAGAGGTCTACCACCTAATGTAATC ACGTACTGTTCTTTATTGGATGCTTTATGCAAAAACCATCACGTTGACAATGCAATTTCTTTGATCAAGAAAATGAAACA CCAGGGTATTCTGCCAAATGTTTACACATACACTATACTCTTGGATGGACTATGCAAAGGTGGAAGACTTAAGGACGCAC AAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGGACGTATACCATAATGATTAATGGGCTTTTT AAAGACGGCTTATTTGATGAAGCATTGGCATTGATGTCAAAAATGGAAGACAACGGTTGCACCCCTGATGCTGTAACATA TGAAATAATTATTTATGCTCTCTTTCAGAAAGGTGACAATGATAAGGCAGAGAAGCTTCTCCGTCAAATGATTGCTAGAG GTCTATTGTAAGAGTAAAACTAGGTAAGATGCTTTTGAGCCTCACGTAAATTTTCTTACCAATGTATTGTCTCTACTTAA TCTACTTTATTTATTTATTTTTGTATTAGTGATCATTGTTAGTGTTTCAGATAACAAACCTGTCAAACCTAGCTGAGACT TAAGTTTTTGGGAATGCTTATAGTTGACTCTATTTACTGCAAGCTATTAATAGTTGAACTTGAACTTTCTTTTGTTTTTA ATTTCTTAAGGGTTTGTGTTCTTTTCATTTGTTATCCTAGTTTGCGAGCTGTTTTTGGCTTCTGGGTCTTGCTGTTTTTT GCATTTTCAAATTTATCAAGAATCATTGTTGTCTCATGTAGTTCAGGTTGGAGTCGGTAGCATTAAAATCTAGTAAACTA CTTTTGTTTTCCTTTCAATCTGGGTTTCTATTACAAATATACTAGCGGAAGCAAGCTTGACATAGTTTATTTTACAACCA GATTCTCCCCTTTGCATTATACATGATATTAAAGTAATGAGAGACTAAGGGCAGGTGGAAAGTGGACATAGGGTATTGAG AATTCACAAATGCAAAATGCTGAATGGCACAAGTCTAATCTGGCATGAAATCTCTCCCCTCACTGTCTCTTCTCATGTTC TGCATCTTGATTATTGTTAGAGAACACACATACATAAATGCAAAATGCTGAATGACACAAGTCTAATCTGGCATGAAATA CAGGAATCTTTGCCTTCTCATGACACACTTTCTGTCAATATCTCTATCTCTTTGTTGTTTTGTTTTCCCTCCTCTAGTTA CTCTCTCTTTTTTCCTCCCTTTCTCTTTTGTCCAGCTTTTGTTTTCCACTTCAGGTCACCATTCTATCTTTGTTTTTCAC AGTTTCTGTTCTCCTCTTCAAATTCAGACCTGTTGCAAACTTGCTATTAGCCTTTGTTTTCTTCCTCTTAATCTTAATTG GCTTAATGCTGTGGAAGGGCTTGGCAGAACAGAGGTTGTGTTTGTCTAAGGTATTAACCTAAGCTTTATAGAACTGGTTT ATTCTATGCTACTGAATTTGAGGCTGTGGAAGAGCTTTCCGCGCCTGGATTGAGGAGCCCTGTGAGGGTTGAAGATTGAG TGGAAACATAAAAAGCAATGATTTTGCAGCATCAACACAACTAGAAACTTTAAAGATGCCTTGAGGTCTTCACATTGAAC TTTGAAGTACAACTCATTAGATTGGATGTACTTTGCCATCAAAACATTTCTCTTTCATGTTATTAGGGTGAATCAATTTA ATAATTTTATCATTTTATGTAATTTAGCTCTGACTCTCTGGCTGGTATTCTTACTAGATCCTATATATGATGTTTCACGC ATTTCTAATGGATGCATAAAATGTTTCTTGTATTGCTGTAGATGCATGTGGAAATGGAGTTTTCTAAGCAGTGTTACTTT GGTTAACTTCCTAAACTGGATGTTGTCTGTTGGAACTCAATGATAGCAGGGTTCTCAATCAATTTTTTAGAACAAAATGC TTTGTCTTTCTTTACGTAGATGTGGCAGATAGGGCTTCTTTCCTTCTAAGTTTTCTTTTGCTGCCATAGTTAGTTCTTGT GCAAAACTGTCTTCTTTATGTAAAGAACAAGAGATTCATGCTCAGATCATGAAAATTGGTTATTTACGTGACATGTTTGT GGGGAGTTCTCTTATTGAATTGTATTGTAAATGTGGCAATGTACCTGGAGCCATATGCTTTTTTCTGAAATGTTACCAGA AGAGAGCTCATGAATGATGTCCAAGTCACTTTGTCACACAAACAATAATCTTTTATTGGTTGGATATAAAGTCAAGAAAT AAGATCACAATATAAGGCTCTATGAAACCAAACCCCCTAATTTTACAATGGGAGCTCTAATTATGGAGTGAAACAACCAC CAAATTAATTATGGTTACTTTCATTGGTCTTAATTTCTTACATTCTCCTCCAGGAAGATGGTCAATAATTCTCTATGATA GCACTTTGATAACTATCAGAGGAAATCCAACTTATTGATTGCTTAACTGGTGTTTCATGTCGTCTAGTTGACATGTTTCA GAATTCAGATGCAAGAATTATAAAGTTTGAAAATCCTAGAAACTTTTTATGGAACACTTAATCCTAAAGTAATTAAAAGC ATATACACTAAATTCTACAGATTTATCTAAAAACATTTGCAGGGATCAAAACTGATTCATCTTAAATTTTAATGGACTAA AAG
CDS sequence (LotjaGi2g1v0444200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCGTCGTTCAGAATCTCTCTGTTTCCCTCACTCTCAAGAACCCTTCACTGTCACTCTCGTAATGCTCCTTCCAA ATTCAATGTTGGTGATGCAATCTCCTCGTTCAATCGCATGCTCCAAATGCGTCCTTCTCCACCCATTATCGAATTTAACA AGTTTTTTACTTCCCTCGTCAAGACGAAGCATTACGCCACCGCCGTTTCCCTTTCTCAACAAATGGATTTCAGGAGAGTT ATGCCTGACTTATTCACTTTCAACATCTTGATCAATTGTTACTGCCACCTAGGTCAAATTACTTCTGCTTTTTCTGTACT CTGCAATATTTTCAAGAGGGGTTATCAGCCTGATACCATCACCTTTAATACAATTATCAAAGGTCTCTGTCTTCAAGGTG AGGTTCATAGAGCACTGTGCTTTCATGATGAGATTGTAGCACGGGGGTTTCTGTTGGATCAGGTTAGTTACGGGACCTTA ATCAACGGGTTATGTAAAATTGGACATACAGGACCTGCACTGCAATTGCTCAGACAGATCCAGGGAAAATTGGCTCAACC TGATGTGGTAATGTACAGCACAATCATTGATAGTTTATGTAAAGATAAACTTGTAAATGATGCCTACAATTTATATTCTG AAATGCTCGCCAAAAGAATTTCACCTGATGTTGTCACTTACACTACGCTAATATCTGGATTTTGCATTGTGGGTCAATTG AAAGAAGCAGTTGGTTTGTTAAATCAAATGGTAGTGAAAAGCATCAATCCAGATGTTTATACCTTTAGTATATTAGTTGA TGCTCTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTGTCATGATCAAAGGAGGGGAAAAACCTGATG TTGTTACTTATAGTTCTTTGATGGATGGGTATTGTTTAGTTAATGAAGTAAACAAGGCTGAAGATATATTTAACACCATG ACCCGAATGGAACTGGCTCCTGATGTTCAGAGTTATAGTATCATGATTAACGGATTATGTAAGATTAAAATGGTTGATGA TGCCTTGAATCTATTTAAACAAATGCATACTGAGAATATTACTCCTAATGTTGTAACTTACAGTTCTCTTATAGATGGTT TGTGCAAGTCTGGGAGAATCTCTGATGCTTGGGAGCTTGTTAATGAGATGCACTCTAGAGGTCTACCACCTAATGTAATC ACGTACTGTTCTTTATTGGATGCTTTATGCAAAAACCATCACGTTGACAATGCAATTTCTTTGATCAAGAAAATGAAACA CCAGGGTATTCTGCCAAATGTTTACACATACACTATACTCTTGGATGGACTATGCAAAGGTGGAAGACTTAAGGACGCAC AAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGGACGTATACCATAATGATTAATGGGCTTTTT AAAGACGGCTTATTTGATGAAGCATTGGCATTGATGTCAAAAATGGAAGACAACGGTTGCACCCCTGATGCTGTAACATA TGAAATAATTATTTATGCTCTCTTTCAGAAAGGTGACAATGATAAGGCAGAGAAGCTTCTCCGTCAAATGATTGCTAGAG GTCTATTGTAA
Protein sequence (LotjaGi2g1v0444200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSFRISLFPSLSRTLHCHSRNAPSKFNVGDAISSFNRMLQMRPSPPIIEFNKFFTSLVKTKHYATAVSLSQQMDFRRV MPDLFTFNILINCYCHLGQITSAFSVLCNIFKRGYQPDTITFNTIIKGLCLQGEVHRALCFHDEIVARGFLLDQVSYGTL INGLCKIGHTGPALQLLRQIQGKLAQPDVVMYSTIIDSLCKDKLVNDAYNLYSEMLAKRISPDVVTYTTLISGFCIVGQL KEAVGLLNQMVVKSINPDVYTFSILVDALCKEGKVKEAKNVLAVMIKGGEKPDVVTYSSLMDGYCLVNEVNKAEDIFNTM TRMELAPDVQSYSIMINGLCKIKMVDDALNLFKQMHTENITPNVVTYSSLIDGLCKSGRISDAWELVNEMHSRGLPPNVI TYCSLLDALCKNHHVDNAISLIKKMKHQGILPNVYTYTILLDGLCKGGRLKDAQEVFQDLLIKGYNLDVRTYTIMINGLF KDGLFDEALALMSKMEDNGCTPDAVTYEIIIYALFQKGDNDKAEKLLRQMIARGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Gene3D | 24 | 181 | 158 | 3.1E-33 | ||
| SUPERFAMILY | 32 | 420 | 389 | 1.59E-5 | ||
| PANTHER | 33 | 180 | 148 | 9.3E-167 | – | |
| PANTHER | 33 | 180 | 148 | 9.3E-167 | – | |
| ProSiteProfiles | 48 | 82 | 35 | 5.919 | ||
| Pfam | 82 | 130 | 49 | 5.7E-14 | ||
| ProSiteProfiles | 83 | 117 | 35 | 11.4 | ||
| TIGRFAM | 85 | 119 | 35 | 3.7E-7 | ||
| ProSiteProfiles | 118 | 152 | 35 | 10.358 | ||
| TIGRFAM | 120 | 153 | 34 | 3.2E-6 | ||
| PANTHER | 126 | 292 | 167 | 9.3E-167 | – | |
| PANTHER | 126 | 292 | 167 | 9.3E-167 | – | |
| Pfam | 148 | 179 | 32 | 1.1E-6 | ||
| ProSiteProfiles | 153 | 187 | 35 | 9.58 | ||
| Gene3D | 182 | 251 | 70 | 3.6E-21 | ||
| Pfam | 186 | 215 | 30 | 1.6E-9 | ||
| PANTHER | 186 | 413 | 228 | 9.3E-167 | – | |
| PANTHER | 186 | 413 | 228 | 9.3E-167 | – | |
| ProSiteProfiles | 188 | 222 | 35 | 11.531 | ||
| TIGRFAM | 190 | 224 | 35 | 6.0E-8 | ||
| Pfam | 222 | 271 | 50 | 1.0E-18 | ||
| ProSiteProfiles | 223 | 257 | 35 | 11.893 | ||
| TIGRFAM | 225 | 259 | 35 | 7.5E-8 | ||
| Gene3D | 252 | 322 | 71 | 2.7E-21 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.948 | ||
| TIGRFAM | 260 | 294 | 35 | 8.7E-7 | ||
| Pfam | 292 | 341 | 50 | 1.1E-16 | ||
| ProSiteProfiles | 293 | 327 | 35 | 11.542 | ||
| TIGRFAM | 295 | 329 | 35 | 2.6E-7 | ||
| Gene3D | 323 | 390 | 68 | 1.8E-25 | ||
| ProSiteProfiles | 328 | 362 | 35 | 12.595 | ||
| TIGRFAM | 331 | 364 | 34 | 5.1E-10 | ||
| Pfam | 362 | 411 | 50 | 2.8E-20 | ||
| ProSiteProfiles | 363 | 397 | 35 | 14.557 | ||
| TIGRFAM | 365 | 399 | 35 | 4.7E-12 | ||
| Gene3D | 391 | 461 | 71 | 1.4E-23 | ||
| PANTHER | 393 | 535 | 143 | 9.3E-167 | – | |
| PANTHER | 393 | 535 | 143 | 9.3E-167 | – | |
| ProSiteProfiles | 398 | 432 | 35 | 12.101 | ||
| TIGRFAM | 400 | 434 | 35 | 5.4E-8 | ||
| Pfam | 429 | 458 | 30 | 9.0E-12 | ||
| ProSiteProfiles | 433 | 467 | 35 | 11.663 | ||
| TIGRFAM | 435 | 468 | 34 | 9.8E-6 | ||
| Gene3D | 462 | 536 | 75 | 9.4E-22 | ||
| ProSiteProfiles | 468 | 502 | 35 | 13.099 | ||
| Pfam | 468 | 514 | 47 | 2.1E-14 | ||
| TIGRFAM | 471 | 504 | 34 | 2.1E-10 | ||
| ProSiteProfiles | 503 | 536 | 34 | 10.676 | ||
| TIGRFAM | 505 | 535 | 31 | 1.8E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0444200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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