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LotjaGi2g1v0446200.4

Overview

Field Value
Gene ID LotjaGi2g1v0446200
Transcript ID LotjaGi2g1v0446200.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description RNA-binding KH domain protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E4|K7K5E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94106894..94115600) extracted from Lotus japonicus Gifu genome v1.2.

CTAAAATCTGAACCAGTGAGTGACACAAGAAAATATCTATCCATTTCTCTCTTTCGATCGAACCGCATCTCATTTCTACT CAACAATGGCGGAGGAAGCAGTTGTGGCACCCGCTGTTAGCCCTGTTCCCTCAGATGGCAAGCGCAAGTTCGAAGATCTG CACCAAGAACCAACCGAACAACTTCCTCTCGAATCCAACCCCAACGCCGGCGAGGTTGAGAACACCGACGATGCTGCAGT TTCCGACGAGGGTGAGACCAAGCGTCCCCGCCTCGACGACAACGGCGATGGCATAGGTACTCCAATTCATCTTCCAACTC TAGCATTCTTGCTACCAATGCTCGTAACAAGCCCATTTTTCCATCCACGAGCTTCTATTGCTAAAATAATCCATTAGGGT TTTGGTAAAAAAATTTGGAGTATAATTTTTGCTGTTGAGTTCATCGTTTCTGCTCTAGATAAACATTATCACGTTGGATT ATCAGTTTTATTCTGCTCTTGTTGTACTTGTTACCGCTAAATGTGCTTGTAGAAAATGCTTTGTGGAAATCTGTCTTATT AGGGCTTTGTTTCGGTTTCTGCAGCTAATGCGAATGGGCATCAAGATAAGCAGGTTGCTGAAACAGAGGAAGAAGCCACC ACTTTGGAGGATGTTGCTATCGAGGATGGTCAAACTACGACCAAAGACGATTCGGAGCCGGCTGGTAATGAACAAACTGC TGATGAACAAACTTCTAATGAAATCGGCGAGCAAGCTGATGGCGATGAGGGAAAAGAGATTCCCGTTGAGGACTCTGGAC TGGAGAATGCTGAGGAGCCAGCTAAAGAAGCTCCCCAGCAGCTGTCTGAAGAAACTCCCCAACAGCCATCGAAGGAGCCA ACTGAGCTAGATTCTTCTTCTGGAGATAAGCAATCCGATTCCGCTGACCCTACTTCGCATGACGCAGAGTTGCCCAACAA TAAGGTTTTGATTATAAAGCTCAGTTTGTAAATGTTTTATTTCTTGAATAACATCTTAGATATCTGGCTATAAAAACAGA ATATTTGTTCTTACACACTTGTATTCGCACTAAAATATTATCTGACTTTTCTTTTTATTCTTTTTTTTACTTGCTTTCAG CAGGATGCTTCTTCTGGACAAGAGCAACCTACATATGGGCCTGATGTTACCTCACGGAAGATCGAAGTTCCTAACAATAA GGTAATTTCCTTCACTTGTATGCATATTATTGGGCTCCATTGTTTACATTGCTAGCTTTAGATTTTGTGTGTATGACACT GACTGGGAGAAGTCTGAGCTAGGATAGTCATGTTTGCCTGAGTTTGAGTTTTTCTTTTAATTCATTAATTGCTAATGGGC AAAATTGTGAGGGACCATAGCAGTGTTATTAAATAGCTGTTATATCGCCGCTATAGCATAGCGGAAATCCGCTGCGTCGA CGCAGCGACGTGACTCACAATAGCGCTGCGATGGGCAAAGCGGAAATATCAGGTGGGAGTTATTTTCACACGTGATTTGA GGGATTTTTCTAAAATGGCACCGCTTGGGGAACGTAACTGCCAACGACTGATTTAATTGGACCCCAATTAGTGGAATAAA AGTTTTAATAGGGTAGTATTGCACGCATCTGTTGAGTCGAAGAACACCTCAACCTTTCCAGTTCTCCCTTCTCTCTTCCT CCTTCTACATCGAGCTTCTGGCCCTCATCTCTGGCGACCCCAAAAGCTTCTCCGACGACTTTTCCGGTTGTTTCTGGCCC ACTTCTCTTCACGCTGCCATGCTCTGGTTTTTGCTTATTTTTAAATTTCTTCTTCTTCCATTATGTACTCTTCTCTTTGC TGTTTTAGACTCTGTTCTTTTTTTTCACTCTATTTTCTTTCCTTTTCTTTTTTCCTTCCTTCTTTCTTCAAATTTTCAGA CTCTGTTTTCTTTCTTTTTCTTTTTTCATTTGTTCGTTACTCACATTTTGAGAATTCAGAATATGTTTTTTTTGGGGCAA ACAGCTTGTGACAAGTTTTTTCTATAATTCTTGACTTATTTTAACCGCTGTGGTTTCCGCTATTTTCCCTCGACGTGATC CGCTATATGAAATAGCAGATTTTTGGTTTCCGGCGATTTTCTGCGATCCGCGATTAACAACACTGACTCTAATGCCTTGG AAAGTGAAAAAAAATTCAATATCAAGAATGTATCTGCCATAAAATTTGACTTTTGTTTTATTAACTTGGAAATCTTGTGA TATGGTTTACAAATACGTATTGTGATAAGGTTTTTGAGAAGCAAATACTGTGTCATGCCTTTAATATGGGCATTCAAAGA TATGTAGGTTAGTGTTCCAACTAGTGTAATAGTACAAGGTTGGGATGCTAAAGACTTCAATATAATCATATGACTACATT AAGGGTTTTTAAATTTGGTATTGGATGTGTGATTATATAACACACCTCAGAGTTAGTTCCATTGTGCATGATTTTGTTTA CAGATATGCAATATTCATAGCTGGAGAGTCGAGTGAAGAAGCTAAAGTCGTGGAAACAAGCTTTGAAAATAATGACTTAC TTTTTAGTAGAAGTAATATAAAGTATATGTGAAGTAGTTTAGCACAGTGTTATGAAATAGCGGTTATAACGTAGCGGAAA TTAGGGCCGGCGCAATGCAACGTCGCGGCCACCGCGATAAACGCAATCGCGGCCACAAACGCCATAGCGGCGATGGACAT GGAAGCGGAAATCGCGGATTTCCTGGGAAACCTGAACGTTTTTTTAGGAAATTGATTGATTATTGGGCTGCTGATTCCAG CATTGCATTAGGAAATTGCTTGATTAGTGGGCTGCCGACCCCAGCAGTAATTCCCATTATTTTTTTTGCCTTTATCAAGA CTTCTTCACCCTGGATGGAATCTTCATTCTCCAGTTATGCTCTTCTGAATTCTCCTTCTCCCTTCCTCATTCAACAAACC CTTCTTCTCGTTCTCCTTCTCAGACAACAGCACACCTTCTCAAGCGAATTTCTTTTGTGTTTTTATTTTCACTGTGTTGA GTTTACAATGACTGGTTATTTTGAACTGCCTTGGGATATTTTAATATTTTAATATTTTTATGTTATGAATGGATATTTCA TGCATTTTCATTACATGTCTTGTTTTTATTTTTATGTAGCAGTTTTTTATTTGAAACACTAGCTTGTGACAAGCTGTTTT TTATATAAAGTTTTACTTATTTTAACCGCTATGCGGTTTCCTCTATTTGCCCCCGACGCTATCCGCTATATGACAGTCGA TTTTGGCCTCACCGCGATTTGCCGCGATCGCTGAATTATTACACTGGTTTAGCATGAGGTGCACATATTTTAGCTAAGAG ATAAAAGTTGAATACCAATACATTTCTCAAGCCACATGTTTTGGTATATTCGATTTCAGGTTGGCTGGATAAAATTTGGG TGTTATTTTTTTTTGTTTTTACATATAGGACAACTCAAGTTTAAAAGAAAAATTTATTGACATGTGATGTTGTAAGAGAT TGAATGCATGCTACTTATTTGCAGGTTGGAGTGCTTATTGGCAAGGCTGGAGATACTATTCGTTACCTACAGTTGAACTC AGGTGCAAAGATTCAGATAACAAGGGATGTTGATGCTGATCCTCACTCTGCAACAAGGCCTGTTGAACTAATAGGAACTT TGGAAAGTATAGAAAAGGCAGAAAAGCTAATGAGTGCTGTGATTGCTGAGGTTGGATACCATATCAAATCTTTATGTTGG TCTGTTTCTCTTTTCTCTTGCTACTATTCTATAACTTTTTGTTGTGTCCTTTTGAAATTCTACAGGCTGATGCCGGAGGT TCTCCTGCTCTTGTAGCTCGAGGCCTCTCTCCTGCTCAAGCTGTGGTGGGATCTGAACAAATTCAGTTACAAGTTCCAAA TGAAAAGGTGATAGAATCTCTATTATGTCTTACTTGTTAGAAGGATGTCATTCGCGTTTCATGTTAATATATGTATCCTT GAGTCACATAAGTTTCTTTTATACAGGTGGGATTAATCATAGGGAGAGGTGGAGAAACGATTAAAAGCCTACAGACCAAA TCTGGGGCACGGATCCAGGTAGTTGTTATCGTGTGCCTTTAAGTTTTTTTTACTAAACCCATGTGATACGGTTGGTAACT AAGTTGGAGCTGGATTTATCTGCCAATAGATCCCAAAAAATGATTCCTTGAATATTTTATATCATAGAAAGTAGTGATGT CATAGAATTATTTCCATACCAATGCCTGTAAAATAGTAGGTTTTGAAACATGAGAGGGAGAAGTTGGTTGATGGTAGTTG GGTCATGGGTGACATTCTCCTAGACTTGCTCACAAGCATATTGTGCCATTCCAGATTTAGTTCAAGGATTCTGATTATGT TCCTTTCAACTGTTTTAGTTAATACCTCAACATCTTCCAGAAGGGGATGATTCTAAAGAAAGGACTGTCCAAGTCACTGG TGATAAGAGGCAAATTGAAGTTGCTCAAGAAATGATAAAGGAAGTCATGAGTCAGGTTTGTTTGACTATACATTTCTTAT GCTGTGAATATCAAATTTATAAGTTCAGATGTTACTAGTGCTTATTTCTCTTTTACTGGAGTTTTTATATTAATGCGGGT GACTTTGCATTCTCTGCTCTATTAATATCTTTTTTTATGTTATTTTTTTCATTATTTTATGTAAGATATGACGTATAATT TAGCCAATTGTCAATTTTGTCTGCTAAACTACGACTTGAAGTAGCCTTGATTTTCTTGTATTTTGGCATCTGGAGCCATA TCTGTCCAATGTCTGTTTCTTTTCTTTGAATGGGAAGCTGAGATTTATATTTCATGTTCACTGTGGAGTGACTGGGTAAT GCTGCTTCACATTGCTTGCACAGTATCGTTCTTGATTATGACTTAATGGTATTTATAAGATTCTATTAGTTGTTTTATGT GGAAGTCTGCCTTGTTTTGCACCTGCTTGAAGTTGAATGCATGTAACAATGTATCTCTTGTTCAGAATTGGTATTGGTGA CTGGGATTGAAACTTAAATGACGATGTCTATCTATTGCTTGATGTGGAATATTCATGAAACTAAATACTGAAGAATGCTA GCTTGTATATAGTGATCTAGACACTTTTCATGTTTGAAATAGGGGTCTGTACTGAAACCTCATGTTTTTAAGTTCGTTCT ATGCTTCTATTTGGGTTTAGTGCTGCTCTATGGTTGCATTTGTGAAAGCAATACAAAACATGATTATGTGCAAGGAAGTG TCCATGTATTCGATGCCTATTTGAACCTTTTTTGGAAGTATTGTATCAATTGCTGCCATGCAAGTGAGATAGGTCTCCTG AAACAGTGTTCAGAGTTTGGAAATTGAACAATAATCCATGCCAAGGTCAATTAAAACTTCTAGGAAGATCGTATATGTAA ACCAAGATCTGAGTTGCAATGATTTATTTATCTTGAAGGTGCCAATTTCGAATTGGTTGGCTTTAAAAATGCAGATTTGG CTATTGCCTTTTCCATGGGGTCAGCATTGCTTTCTTGATGTAGCATAGACAACATATTCCCTTTCATCCACTGAAGAGAG GTGGCAGACATAAAACCTCGGATTGCAGGATGTTTAATGGTTGGTAAGATTGCTTCAAGACTTAAAAATCATGATTAGTA AGACTATATTGTGCTGGCCTTGGGGGCTCAAATAGAGCTCCTGTGTGATTTGCATGAGACCTATTGGAAGGAAAGAATCA TACCTGGTGAAGTCATAAGCCTAATGATATTTTTACTGTGTTAGAGTTGCATTCCTTTGTGTCTGTCAAGTTCTGTACTG AGAAACATTATAAAAAGAAATGCATGTCATTTGCTGCATTGAGGTCGGAGAAAATGCAATTTCATTGTCCACATGTTCAT TGACCAGTCCAAATATATTGTGCTCATTTACTTGCTTTATAACATTTCTGACCTCACGATCCTCTGGTTCAAAGGACTAG CATATTAGATGAATATGAAGCTGGTGTTGTAAGTACAAAAGATTGAAGCGACCTAGTTGACCATGTTGGTTAATTAAAAG ATGAATTTTGAATACCCAACTTTGCTTTTGCGGATCTTTGTAATGGTTGAAGGTATCAGTTAATGTCTGTTCTTTTTCCC TTTTGGAGTTTCTTTACTTTACCTGTAATGACTGGTTAGTGATGATTATAGGAAAATTTGTCATATTGAATGATCTATTG TTAAGGCCTTTTATATCAACCTGGTTTTCACTTTATTATGTTTCAATATATTTCACACAACATTTTAGTAAATTGTTAAG TAGCACAATATATCAATACATAATCTCTTGCAAGATTGGCTAGCTATGGCTAGTTTTTGTTGGTTTCATGGATAGAAATT TAGCTTATAGTGCATTTTGAGTTTTCCTTTGGCGTTGTCAGGCCTCTTTCTTTTCCCCTCCCTTATTTGCTGAGGTGAGA TCTTTTTTCTCCTGATAACATCAAACATATGACTTGATCTTTTTTGCATAGCATTTACTTGATCATTTACTGTGGTTGAG CTCGAGATATATGATGTTATTGATATTGCATTATTTTGAGTTCTGATAGCCTGCTGCTCTTTTGTTTTTACTTCACATTC AGTTTCAGCTCTATCCATTCGAAAAAGTTATGATGACTTGGTCTATATGCCACATTGGTTGCTATGATAATGCAATTGTT AATGTGATCCTTTTTATTTCATGCTGAGAAAATTATTTTAATTTTACTCTACTTTTTTGGCTGGAGCATGGCTTTTAACC AAATTTTACTAACTGCGGCAATTAAATAGGTATTCAAAATGATTAAGAATATATGCTTGACTTGGCTCTCTGAAATTTAT TTGTACAATTCTTTATTGAAGTTAAGGATAGCAGCTGCATCTTTGCTATTGACTGATATTTTTTTTTGTTACAAGTCCCA AAATTCTAATAATTCTCATCAATATTTTTTCCCTGTTTGTTTGTTTCTGTTGCATGCTGTGCTTGAATAGCCTGTCAGGC CATCCACTGGAGGTTATGGTCAGCAGGCCTACCGCCCACCTCGTGGATCTGGTGGTCCACCCCAATGGGGTCAGCGAGGT TCTTATGGTCAACTGGCAACTTATGATTATCAGCACCGTGGGCCATATCCTTCTCATAATCAACCTTATGCACATTCACC ATATGGAAGTTATCCTCAACATATGGCTCCAAGAAGCAGCTATGGTTCTGGTTGGGAGCAAAGACCTCACCACAGTTTGC AGGGGCCACCCTCACACGGTGGCGGTTACGATTACTATGGAGGGCAAGGGGGTCATCTATCCGATGCTCCTCCATCCACC CAGCTTCCCAGTTCAGTCCCCCCACATGGCACTGGTCCTTCCCCAGCTCAGGTGAATTACAATTATGGACAGCCACAAGG TCAGGAATATGGTCATCAGGCACCTTATGCTCAGGCAGGACATCCTCCACAAGGTTATGCACAAGGATATGGTGAATCGA AGTATGAAAATCATCCCCCTACTCAACATCCCTATGGTGGACATATAAATCCTCAGCCGTCCTACCCTCAGGCCGGTCCT AATTATGCTGCACCGCAGCAGTATGGCAAGCCGCCAGTATATGGCCAGCCATCACATGGACAGGCTCCACAATCTTATGG TCACCCTAGAGCTACTCAACCAGGGGATATACCATATCAAGGTTCTACTCCTGCCCAGTCTTACGGTACGAGCATGCCAA TGCAACAACCATATCCATATGCATCCTCTGCGCCGACACAAGCAGCATATCCTACTTATGGGTCAGCACCAGCTGCAGAT GGTTACAATCACCCGCCCGCTGCATCTGGACCGGTCTATGCCCAGCCTGGTGGACAACCTACTTATAGCCAGCCAAGCGC CCAGCCTGCAGCTAGTTATGCTCAAGGTTATGGATCATACCCATCTCAGCAAACTTACCCTGAGCAGTCAGCTCCTAACA ATGCAGTTTATGGCTACCAAGCGCCCCAAGATCCTAGTTACGGCAGTGCTGCTGCTCCAGCATATAGTGCAGCACAAAGT GGGCAGCCAGGTTATGCTCAACCCACACCAACTCAAACTGGTTATGAACAATCAGCAGGCTATGCAGCTGTACCTGCAGC AAGTGCTCCAGCTGCTGCTTATCCCCAATATGACACTGCCCAAGTTTATGGTGCTCCACGATGATCTTTATGAGAACCAA ATCACAGTTCTAGCATGTTCTAGTTTGATGGCATTTTTCAGCGTAACCTGCTATTAATTTTCTTGTAATCTGTACTGCTT CGTATTGACCATGTACTGATTTGTTTTCCAGTGCACTGAGATTATGATATCTAGGAAATCAAAGGCGGCTTTGGCTTTAT TTTAGCAAAGGCTTTCAGAATAAAAATGATCGAGAAAGAGAATTTACTTCCTCACATCTTATTATGCTGTGAATTGACTA TAAACATGAGTTAAGAGTTATGTCGGTCAGTATAATAAGATATGCGATAGCTAATTCATGGCTCATGCTTATAGTCCATT CACAGCACAATAAGACATGGGAAAGTAAATTCAGTGCTTTACGCCTAACATGTTCCACTATAATTATAACTCGTCTGCTA TATCAATGATATTTACTATAATAGCACATGTTAGCTTGCGGAAAGTGTTTTTAATTTTAAAAGTAAG 

CDS sequence (LotjaGi2g1v0446200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGGAAGCAGTTGTGGCACCCGCTGTTAGCCCTGTTCCCTCAGATGGCAAGCGCAAGTTCGAAGATCTGCACCA AGAACCAACCGAACAACTTCCTCTCGAATCCAACCCCAACGCCGGCGAGGTTGAGAACACCGACGATGCTGCAGTTTCCG ACGAGGGTGAGACCAAGCGTCCCCGCCTCGACGACAACGGCGATGGCATAGCTAATGCGAATGGGCATCAAGATAAGCAG GTTGCTGAAACAGAGGAAGAAGCCACCACTTTGGAGGATGTTGCTATCGAGGATGGTCAAACTACGACCAAAGACGATTC GGAGCCGGCTGGTAATGAACAAACTGCTGATGAACAAACTTCTAATGAAATCGGCGAGCAAGCTGATGGCGATGAGGGAA AAGAGATTCCCGTTGAGGACTCTGGACTGGAGAATGCTGAGGAGCCAGCTAAAGAAGCTCCCCAGCAGCTGTCTGAAGAA ACTCCCCAACAGCCATCGAAGGAGCCAACTGAGCTAGATTCTTCTTCTGGAGATAAGCAATCCGATTCCGCTGACCCTAC TTCGCATGACGCAGAGTTGCCCAACAATAAGCAGGATGCTTCTTCTGGACAAGAGCAACCTACATATGGGCCTGATGTTA CCTCACGGAAGATCGAAGTTCCTAACAATAAGGTTGGAGTGCTTATTGGCAAGGCTGGAGATACTATTCGTTACCTACAG TTGAACTCAGGTGCAAAGATTCAGATAACAAGGGATGTTGATGCTGATCCTCACTCTGCAACAAGGCCTGTTGAACTAAT AGGAACTTTGGAAAGTATAGAAAAGGCAGAAAAGCTAATGAGTGCTGTGATTGCTGAGGCTGATGCCGGAGGTTCTCCTG CTCTTGTAGCTCGAGGCCTCTCTCCTGCTCAAGCTGTGGTGGGATCTGAACAAATTCAGTTACAAGTTCCAAATGAAAAG GTGGGATTAATCATAGGGAGAGGTGGAGAAACGATTAAAAGCCTACAGACCAAATCTGGGGCACGGATCCAGGTATTAAT ACCTCAACATCTTCCAGAAGGGGATGATTCTAAAGAAAGGACTGTCCAAGTCACTGGTGATAAGAGGCAAATTGAAGTTG CTCAAGAAATGATAAAGGAAGTCATGAGTCAGGTTTGTTTGACTATACATTTCTTATGCTGTGAATATCAAATTTATAAG TTCAGATGTTACTAG 

Protein sequence (LotjaGi2g1v0446200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEEAVVAPAVSPVPSDGKRKFEDLHQEPTEQLPLESNPNAGEVENTDDAAVSDEGETKRPRLDDNGDGIANANGHQDKQ VAETEEEATTLEDVAIEDGQTTTKDDSEPAGNEQTADEQTSNEIGEQADGDEGKEIPVEDSGLENAEEPAKEAPQQLSEE TPQQPSKEPTELDSSSGDKQSDSADPTSHDAELPNNKQDASSGQEQPTYGPDVTSRKIEVPNNKVGVLIGKAGDTIRYLQ LNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEK VGLIIGRGGETIKSLQTKSGARIQVLIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQVCLTIHFLCCEYQIYK FRCY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 217 217 -
MobiDBLite 52 66 15 -
PANTHER 87 385 299 4.0E-109
PANTHER 87 385 299 4.0E-109
MobiDBLite 105 123 19 -
MobiDBLite 127 147 21 -
MobiDBLite 156 211 56 -
Gene3D 206 306 101 1.4E-20
SUPERFAMILY 211 287 77 8.47E-15
SMART 212 285 74 7.7E-14
ProSiteProfiles 213 280 68 16.688
Pfam 216 281 66 5.4E-15
CDD 217 279 63 2.33402E-12
SUPERFAMILY 307 384 78 7.89E-18
SMART 308 383 76 1.0E-17
Gene3D 308 386 79 3.7E-24
ProSiteProfiles 309 378 70 18.512
Pfam 312 380 69 1.0E-18
CDD 312 379 68 7.55592E-17

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0446200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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