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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0446600 |
| Transcript ID | LotjaGi2g1v0446600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G42310.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial; TrEMBL-Plants: tr|K7LMI2|K7LMI2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94130836..94133816) extracted from Lotus japonicus Gifu genome v1.2.
AATGTACGATATACTATGGTTGTCTTTGAACTGTGCTGCACTTGTCTTGTTTGTTTGTAACAGAAACAACACAAGATAGT AGCATGGATATGCAATCCGTTTTCTGCTCTAATCAAATTTCACTGTCACGCAATCATGGTGGTGCTCTTCGTTGCTCGTC TCATGCAACTGCTATCCAATTCAGTAAAATCCCCAACTCTCTCAATTCCTCAAATCTCTGGATTCGAAACAAGGTTGTTA ATTCAGAATCTGATACCAAAACAACGCTTTTTCCAAATCCTGAAGCTCCTAGACCCGGGGAAGAGCTTTCCAGCGAGTTT TACAGCCAATTAATCAGCAAGTGTTGCAAAGAAGGAAACTTGGATAGAGCTATGTCCCTTCTTGCTCAGATGGAAGCTTT GGGGTTTCAGCTCAGTTCATATTCCTATACCCACTTAATTGAAGCCCTTGGAAATGTTGGAAGAACTTCAGAGGCTGATA TGCTGTTCAAGGAAATGATTTATTGTGGGCTTAAACCCAGGTTGAATTTGTACAACATTTTGCTCAGAGGGTTTTTGAAG AAAGGCCTGTTAGGACTTGCAAATGGGCTCTTGAAGGAAATGGTTGATTCAGGTATTTGGAGGACTAGAGAGACATATGA GATCTTATTGGATTACTTTGTGAGTGCTGGGAGGTTGGAAGATACATGGTCAACAATCAATGAGATGAAGATGAAAGGGT TTCAACCTAACTCATTTGTGTATAGCAAGATTGTTGGGCTTTATAGGGACAATGGGATGTGGAAGAAAGCAACTGAGGTT TTGGAAGAGATCAGAGAGAGGAAAATTTCTTTAGACACCCATATTTATAATAGTATTATTGATACCTTTGGGAAATATGG TGAATTGGGTGAAGCATTGAAGCTGTTTGTGAAAATGCAGAAAGAAGGTGTGAGGCCAAATATAGTGACATGGAATTCAT TGATTAAGTGGCACTGTAGAGAGGGTGATTACACGAAAGCCCTTAATTTGTTTTCTGATATGCAAGAGCAAGGATTGTAT CCTGACCCTAAGATCTTTGTCACCATTATTAGCTGCTTGGGGGAGCAGGGAAAGTGGGATACAATAAAGAAATGTTTTGA AAGCATGACAAGCAGGGGGAATAAAAAATATGGGGCGGTTTATGCTGTTTTGGTGGATATTTTTGGACAATATGGGAAGT TTCAGAATGCTGAGGAGTGTGTACAAGCTCTGAAGTCCGAAGGTGTGCTAGTTTCACCAAACATTTTTTGTGCGTTAGCA AATGCTTATGCTCAGCAGGTATACTACTTTTATCTTGCTCCTTTTGCGCGGACCTGGGTATAACTATTTACACAAGAAGC ACAAATACTTTAAAGTAGTTTATGTTCGTAATAAGAAGGGGAAAAAGATAGATCCTTACTTGATTTGATTTCTTGTCAGG GCTTATGTGAACAGGCTATTAAGGTGCTTCAGATCATGGAAGGGGAGGGAATTGAGCCAAATATTGTTATGCTCAATATG TTAATCAATGCATTCAGTAATGCTGGGAGATATATGGAAGCAATGTCTGTTTATCATCATATAAAAGAAAGTGTAAGCCT TCTTAGTTACCAATAGAAATATTATGTTTTAATTTTACTAATGCAATATTCCATTTTCAATTTCTGATGGTATTGCTGTA ACTTCATGAAGGGTGTTAGCCCTGACTTGGTCACCTACACCACTCTTATGAAGGCATTTATACGGGCCAAAAAGTTTGAT GAGGTGCTGCAAATTCTTTTACTATTTTGTTATTTCCATGACTGTAAGATCTAGTTGCCTTATTCATGCTGATACGGTTA TGTTTAGGTTCCCATTATTTACAAGCGAATGGAGACTGATGGATGCACTCCTGACAGAAAAGCGAAACAGATGTTACAAG ATGCATTAACTGCGCTTGAACGAAGGAGCACATGAGAAATATATTTAACTTAGGGATGGAAACATCGGAGCCATTAACTT GTTCTTGGTCATTTGAAAATTATACATGTATTGCTGAATCCATGGTGAGCATTCTACTGTCTTGTTATTGTATTTGATGA TATATACTTGACTTGCTGGCGAAAATTAAGGATTTCTACAATGTCCACCTTTGCTAGTGAAACAGGGATGACAGTTGACA CAAGATGATGAGATTGAGATCCCTCGTGTGTACTGCCTAGATTGTTGAAAGGGCAGGGGAGGACAATGATCATCATGTGT GTGGCAGAGTCTCCTTGAAGGTTGAAAGGTGCCGTATCGAGATGGACATTTGTGGTAACATAAAATGGTTGCTAGAGAAG CAAATTAAGGTTCTTTTTGTGATATTGGGTATTTCAGCTGATTGAGAATGATACCTAGTTGGAGGTTATTAGCTGCAAGA GATTCAATGATGTGCTATCATTGGCTAATTATCGTGTGGGGACGTGGATCCAGAGACAATTTGTCATGACCATTTATAGT GCAAGGAAAGTCTGAAGTTGGCTTAGGATGCACTGAAGGCCTTGATCTTCAACACTTCATTTGGAAGACTAGCCTACAGG AATGATGTTTACAAGAAGGTGCTATTTATATGCGTTTAGCACCATTAATGTTGAATGATAGAAGAATGCAGCTGGGAATG GGGTAGTGCTTGAAGGGTAAATCGTCCTTATACACTTGGATAGGGTGAGAAAAAGGGTGATAAATGATATGATGACAAAG AAGAGTGTGATACAAAGAAAAAATCAGGTGGAGAAAGATGGAGATACCCTTGAGATGTATAAAAATCATTGTTGATACTT GAAACAACAATGCTGATTCTCTCATTCCAATGTTTCTGTAGTGGTGTGACTGCTGTTCTCCCTGACTATAGTTTGTAAAT ATTATTTCATCATGCAGAATAATACTTGAAACAAAATACAAATGAAGCAACAATTAAGGAGTGTTTACCAATTGATTCAA CTAAGGTTATATGGTTTTCTC
CDS sequence (LotjaGi2g1v0446600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATGCAATCCGTTTTCTGCTCTAATCAAATTTCACTGTCACGCAATCATGGTGGTGCTCTTCGTTGCTCGTCTCA TGCAACTGCTATCCAATTCAGTAAAATCCCCAACTCTCTCAATTCCTCAAATCTCTGGATTCGAAACAAGGTTGTTAATT CAGAATCTGATACCAAAACAACGCTTTTTCCAAATCCTGAAGCTCCTAGACCCGGGGAAGAGCTTTCCAGCGAGTTTTAC AGCCAATTAATCAGCAAGTGTTGCAAAGAAGGAAACTTGGATAGAGCTATGTCCCTTCTTGCTCAGATGGAAGCTTTGGG GTTTCAGCTCAGTTCATATTCCTATACCCACTTAATTGAAGCCCTTGGAAATGTTGGAAGAACTTCAGAGGCTGATATGC TGTTCAAGGAAATGATTTATTGTGGGCTTAAACCCAGGTTGAATTTGTACAACATTTTGCTCAGAGGGTTTTTGAAGAAA GGCCTGTTAGGACTTGCAAATGGGCTCTTGAAGGAAATGGTTGATTCAGGTATTTGGAGGACTAGAGAGACATATGAGAT CTTATTGGATTACTTTGTGAGTGCTGGGAGGTTGGAAGATACATGGTCAACAATCAATGAGATGAAGATGAAAGGGTTTC AACCTAACTCATTTGTGTATAGCAAGATTGTTGGGCTTTATAGGGACAATGGGATGTGGAAGAAAGCAACTGAGGTTTTG GAAGAGATCAGAGAGAGGAAAATTTCTTTAGACACCCATATTTATAATAGTATTATTGATACCTTTGGGAAATATGGTGA ATTGGGTGAAGCATTGAAGCTGTTTGTGAAAATGCAGAAAGAAGGTGTGAGGCCAAATATAGTGACATGGAATTCATTGA TTAAGTGGCACTGTAGAGAGGGTGATTACACGAAAGCCCTTAATTTGTTTTCTGATATGCAAGAGCAAGGATTGTATCCT GACCCTAAGATCTTTGTCACCATTATTAGCTGCTTGGGGGAGCAGGGAAAGTGGGATACAATAAAGAAATGTTTTGAAAG CATGACAAGCAGGGGGAATAAAAAATATGGGGCGGTTTATGCTGTTTTGGTGGATATTTTTGGACAATATGGGAAGTTTC AGAATGCTGAGGAGTGTGTACAAGCTCTGAAGTCCGAAGGTGTGCTAGTTTCACCAAACATTTTTTGTGCGTTAGCAAAT GCTTATGCTCAGCAGGGCTTATGTGAACAGGCTATTAAGGTGCTTCAGATCATGGAAGGGGAGGGAATTGAGCCAAATAT TGTTATGCTCAATATGTTAATCAATGCATTCAGTAATGCTGGGAGATATATGGAAGCAATGTCTGTTTATCATCATATAA AAGAAAGTGTAAGCCTTCTTAGTTACCAATAG
Protein sequence (LotjaGi2g1v0446600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMQSVFCSNQISLSRNHGGALRCSSHATAIQFSKIPNSLNSSNLWIRNKVVNSESDTKTTLFPNPEAPRPGEELSSEFY SQLISKCCKEGNLDRAMSLLAQMEALGFQLSSYSYTHLIEALGNVGRTSEADMLFKEMIYCGLKPRLNLYNILLRGFLKK GLLGLANGLLKEMVDSGIWRTRETYEILLDYFVSAGRLEDTWSTINEMKMKGFQPNSFVYSKIVGLYRDNGMWKKATEVL EEIRERKISLDTHIYNSIIDTFGKYGELGEALKLFVKMQKEGVRPNIVTWNSLIKWHCREGDYTKALNLFSDMQEQGLYP DPKIFVTIISCLGEQGKWDTIKKCFESMTSRGNKKYGAVYAVLVDIFGQYGKFQNAEECVQALKSEGVLVSPNIFCALAN AYAQQGLCEQAIKVLQIMEGEGIEPNIVMLNMLINAFSNAGRYMEAMSVYHHIKESVSLLSYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 67 | 244 | 178 | 1.2E-39 | ||
| ProSiteProfiles | 76 | 110 | 35 | 10.589 | ||
| PANTHER | 76 | 231 | 156 | 1.5E-76 | – | |
| TIGRFAM | 80 | 111 | 32 | 1.2E-5 | ||
| Pfam | 98 | 155 | 58 | 1.9E-8 | ||
| ProSiteProfiles | 111 | 145 | 35 | 10.918 | ||
| TIGRFAM | 113 | 145 | 33 | 2.7E-5 | ||
| ProSiteProfiles | 146 | 180 | 35 | 8.649 | ||
| TIGRFAM | 149 | 178 | 30 | 3.8E-4 | ||
| ProSiteProfiles | 181 | 215 | 35 | 10.26 | ||
| TIGRFAM | 184 | 216 | 33 | 3.0E-6 | ||
| Pfam | 184 | 223 | 40 | 2.2E-7 | ||
| ProSiteProfiles | 216 | 250 | 35 | 9.186 | ||
| TIGRFAM | 219 | 252 | 34 | 0.0019 | ||
| PANTHER | 220 | 406 | 187 | 1.5E-76 | – | |
| SUPERFAMILY | 230 | 417 | 188 | 6.02E-7 | – | |
| Gene3D | 245 | 315 | 71 | 5.6E-20 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.693 | ||
| TIGRFAM | 254 | 287 | 34 | 1.2E-8 | ||
| Pfam | 254 | 283 | 30 | 5.7E-6 | ||
| Pfam | 285 | 322 | 38 | 5.8E-13 | ||
| ProSiteProfiles | 286 | 320 | 35 | 13.23 | ||
| TIGRFAM | 288 | 321 | 34 | 4.8E-11 | ||
| Gene3D | 316 | 386 | 71 | 5.5E-8 | ||
| ProSiteProfiles | 321 | 355 | 35 | 8.758 | ||
| Pfam | 325 | 352 | 28 | 0.062 | ||
| TIGRFAM | 325 | 352 | 28 | 4.5E-4 | ||
| ProSiteProfiles | 356 | 390 | 35 | 6.763 | ||
| Pfam | 381 | 438 | 58 | 2.9E-7 | ||
| Gene3D | 387 | 462 | 76 | 5.9E-14 | ||
| ProSiteProfiles | 391 | 425 | 35 | 9.712 | ||
| TIGRFAM | 394 | 427 | 34 | 4.9E-4 | ||
| PANTHER | 396 | 455 | 60 | 1.5E-76 | – | |
| ProSiteProfiles | 426 | 456 | 31 | 8.791 | ||
| TIGRFAM | 429 | 456 | 28 | 3.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0446600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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