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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0447300 |
| Transcript ID | LotjaGi2g1v0447300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G71420.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein At1g71420; TrEMBL-Plants: tr|A0A0B2QZY1|A0A0B2QZY1_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0447300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94150495..94153418) extracted from Lotus japonicus Gifu genome v1.2.
CACTACCTTAAACATCATGGGAGGGGAGAACTTATTTACAATTTCTTTTGAAAGAATTTTTAACAAACCAATATGATTTG ATGCTACGGTCCAGCAACCTAGCGCGCCATGTGTTCCCCAAACGTTGTATGTTGCAGAATCTATGTATTTCTATGGTTGC TGCTGAACCAGAAACCACCATATCCACAAACATTGATGCACAGATACGAGCTCTTTCTCTGCAAGGCAACCTTGAAGAAG CTCTTTCACTTCTCTACACCCACGACAAACACATCCTCACTCACTCTTCTCTGTCCCTTCAAACCTATGCCTCTCTGTTC CATGCTTGTGCCAAGAACAAGTGCCTCCAACAAGGCATGGCTCTGCACAATTACATACTTCACAAAGACCCCACAATTCA AAATGATCTCTTTCTCACTAACCACCTTGTAAACATGTACTCTAAGTGTGGCCACTTAGAATATGCTCGTTACGTGTTCG ATCAAATGCCGCGCAGAAACATTGTTTCTTGGACTGCTCTCATTTCTGGGTATGCACAATGTGGCCTGATCAGAGAGTGT TTCTATCTATTCTCTGGTTTGTTGGCTCACTATCGCCCCAATGAGTTTGCTTTTGCAAGTTTGCTGAGCGCTTGCGAGGA GCACGACATCAAATGTGGCATGCAGGTACATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAGTGTGTATGTTGCAAATG CTCTCATTACAATGTATAGCAAGTGCTCTGGTGGTTTTCATGGAGGTTATGATCCAACAGGAGATGATGCCTGGACCATG TTCAAGTCAATGGAGTTTAGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTCCAATTTCGTGGACTTGGGGACAA AGCCATACGTCTTTTCGCACATATGTACTGCAGTGGAATCGGGTTTGACCGTGCCACACTACTTAGTGTCTTCTCTTCCT TGAATGAATGCAGTGCTTTTGATGAATTGAACATACCTCTCAGGAACTGTTTTGTGCTGCACTGTCTCGCTACAAAAACC GGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCTTATGCAAATCTTGGAGGACAAATTTCTGACTGTTA TAGGCTCTTCCTTGATACAAGTGGGAAACAAGATATTGTGTCATGGACTGCTATTATAACCGTGTTGGCAGATCAGGATC CTGAGCAGGCTTTCCTCCTTTTCTGCCAACTTCACCGTGAGAATTTTGTGCCGGACTGGCATACATTCTCCATTGCCTTA AAAGCTTGCGCATACTTTGTGACTGAGCAACAAGCCCTGGCAGTTCACTCACAAGTAATTAAAAGAGGGTTTCAGAAAGA TACAGTTCTTTCAAATGCCTTGATACATGCTTATGCGAGGTCTGGTTCCTTAGCTTTGTCTGAACAAGTATTTGATGAAA TGTGTTGCCATGACTTGGTTTCTTGGAATTCGATGCTCAAGTCTTATGCCTTGCATGGGAAAGCTAAAGATGCACTGGAG CTCTTTAAGAAATTGGATGTCCATCCAGATTCTACAACCTTTGTCGCGCTTCTCTCAGCATGCAGTCATGCTGGACTTGT TGAAGAAGGAGTGGAAATTTTCAACTCCATGTCTGATAATCATGGCATTGTTCCTCAACTAGATCACTATGCCTGCATGG TTGACCTTTATGGGCGAGTTGGGAAGATATCTGAGGCTGAGGATTTGATACATACAATGCCAATGAAACCTGATTCTGTG ATTTGGAGTTCATTACTCGGATCCTGCCGGAAGCATGGGGAGACTCGCTTGGCCAGAATTGCAGCTGAAAAGTTTAAAGA GTTAGATCCTAAAAATTCATTGGGATACGTACAAATGTCAAACATATATTCCTCTGAAGGTAGTTTTATTGAAGCTGGCT TAATTAGGAAGGAAATGAGAGACTCTAGAGTGAAAAAACAACCTGGATTAAGCTGGGTTGAGGTTGGGAAGCAGGTTCAT GAGTTCACCTCCGGTGGTCATCATCATCCTCACAAGGAGGCCATACAAAGCCGTCTCGAGATATTGATTGGACAATTGAA AGAAATGGGTTATGTGCCAGAGATTACCTTAGCCTTGTATGACACAGAAGTGGAGCACAAAGAAGACCAATTGTTTCATC ACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAATGAAGGAAATTTGCCTTGTGGTGGTAATGTCATTAAGATAATG AAGAATATCCGTATTTGTGCTGATTGCCATAACTTCATGAAATTAGCATCAAATCTATTTCAGAAGGAGATTGTTGTGAG AGATTCAAACCGCTTTCACCATTTCAAAAATGCAACATGCTCTTGTAATGACTATTGGTAACATGCCACCTGGATTCCCC CTGTGGTTGTAATGACTGTTGATCACACACTAGTTGCACTTCTCAACTAGATTTTGGCTATATTTGGATTGGTAGAAAGG AGATAAAATGAAGTGACGCCAAGTTCTATTGTTTGGAATGTTGATGGAATGGAATCTAATGAGATGTATTATGTTCCATT CTATCCCAAACATCTCCTTTTATCTCTCTTGATTTGGGGAATGTGGGATGGAAACATTTTTTTATTTCTTTCCATCCGAA TGTTATCACAAAATATGCAAATAATGGAATCATAGCTAGCTTACGTTACATTCCATCTCATCTTATTTCATTTCATTCCA GCTATCATTAGATGTCCAACATAGCCTCTTTGTCATGTTACTTCAATCGAGGAAACGCAACTTGCTGAACATAAGTGAAA TGCAATTGTACGGAGGACACTGTTAGCTGCTTCTTTAGTTCATGAATATGTTGAACTTAAAATGTAATAAACTTCATTTT CTCTAGAATTTAGTTCTCTTCAGTTCCACATCTTGGCTTAGCTC
CDS sequence (LotjaGi2g1v0447300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACGGTCCAGCAACCTAGCGCGCCATGTGTTCCCCAAACGTTGTATGTTGCAGAATCTATGTATTTCTATGGTTGC TGCTGAACCAGAAACCACCATATCCACAAACATTGATGCACAGATACGAGCTCTTTCTCTGCAAGGCAACCTTGAAGAAG CTCTTTCACTTCTCTACACCCACGACAAACACATCCTCACTCACTCTTCTCTGTCCCTTCAAACCTATGCCTCTCTGTTC CATGCTTGTGCCAAGAACAAGTGCCTCCAACAAGGCATGGCTCTGCACAATTACATACTTCACAAAGACCCCACAATTCA AAATGATCTCTTTCTCACTAACCACCTTGTAAACATGTACTCTAAGTGTGGCCACTTAGAATATGCTCGTTACGTGTTCG ATCAAATGCCGCGCAGAAACATTGTTTCTTGGACTGCTCTCATTTCTGGGTATGCACAATGTGGCCTGATCAGAGAGTGT TTCTATCTATTCTCTGGTTTGTTGGCTCACTATCGCCCCAATGAGTTTGCTTTTGCAAGTTTGCTGAGCGCTTGCGAGGA GCACGACATCAAATGTGGCATGCAGGTACATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAGTGTGTATGTTGCAAATG CTCTCATTACAATGTATAGCAAGTGCTCTGGTGGTTTTCATGGAGGTTATGATCCAACAGGAGATGATGCCTGGACCATG TTCAAGTCAATGGAGTTTAGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTCCAATTTCGTGGACTTGGGGACAA AGCCATACGTCTTTTCGCACATATGTACTGCAGTGGAATCGGGTTTGACCGTGCCACACTACTTAGTGTCTTCTCTTCCT TGAATGAATGCAGTGCTTTTGATGAATTGAACATACCTCTCAGGAACTGTTTTGTGCTGCACTGTCTCGCTACAAAAACC GGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCTTATGCAAATCTTGGAGGACAAATTTCTGACTGTTA TAGGCTCTTCCTTGATACAAGTGGGAAACAAGATATTGTGTCATGGACTGCTATTATAACCGTGTTGGCAGATCAGGATC CTGAGCAGGCTTTCCTCCTTTTCTGCCAACTTCACCGTGAGAATTTTGTGCCGGACTGGCATACATTCTCCATTGCCTTA AAAGCTTGCGCATACTTTGTGACTGAGCAACAAGCCCTGGCAGTTCACTCACAAGTAATTAAAAGAGGGTTTCAGAAAGA TACAGTTCTTTCAAATGCCTTGATACATGCTTATGCGAGGTCTGGTTCCTTAGCTTTGTCTGAACAAGTATTTGATGAAA TGTGTTGCCATGACTTGGTTTCTTGGAATTCGATGCTCAAGTCTTATGCCTTGCATGGGAAAGCTAAAGATGCACTGGAG CTCTTTAAGAAATTGGATGTCCATCCAGATTCTACAACCTTTGTCGCGCTTCTCTCAGCATGCAGTCATGCTGGACTTGT TGAAGAAGGAGTGGAAATTTTCAACTCCATGTCTGATAATCATGGCATTGTTCCTCAACTAGATCACTATGCCTGCATGG TTGACCTTTATGGGCGAGTTGGGAAGATATCTGAGGCTGAGGATTTGATACATACAATGCCAATGAAACCTGATTCTGTG ATTTGGAGTTCATTACTCGGATCCTGCCGGAAGCATGGGGAGACTCGCTTGGCCAGAATTGCAGCTGAAAAGTTTAAAGA GTTAGATCCTAAAAATTCATTGGGATACGTACAAATGTCAAACATATATTCCTCTGAAGGTAGTTTTATTGAAGCTGGCT TAATTAGGAAGGAAATGAGAGACTCTAGAGTGAAAAAACAACCTGGATTAAGCTGGGTTGAGGTTGGGAAGCAGGTTCAT GAGTTCACCTCCGGTGGTCATCATCATCCTCACAAGGAGGCCATACAAAGCCGTCTCGAGATATTGATTGGACAATTGAA AGAAATGGGTTATGTGCCAGAGATTACCTTAGCCTTGTATGACACAGAAGTGGAGCACAAAGAAGACCAATTGTTTCATC ACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAATGAAGGAAATTTGCCTTGTGGTGGTAATGTCATTAAGATAATG AAGAATATCCGTATTTGTGCTGATTGCCATAACTTCATGAAATTAGCATCAAATCTATTTCAGAAGGAGATTGTTGTGAG AGATTCAAACCGCTTTCACCATTTCAAAAATGCAACATGCTCTTGTAATGACTATTGGTAA
Protein sequence (LotjaGi2g1v0447300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRSSNLARHVFPKRCMLQNLCISMVAAEPETTISTNIDAQIRALSLQGNLEEALSLLYTHDKHILTHSSLSLQTYASLF HACAKNKCLQQGMALHNYILHKDPTIQNDLFLTNHLVNMYSKCGHLEYARYVFDQMPRRNIVSWTALISGYAQCGLIREC FYLFSGLLAHYRPNEFAFASLLSACEEHDIKCGMQVHAVALKISLDASVYVANALITMYSKCSGGFHGGYDPTGDDAWTM FKSMEFRNLISWNSMIAGFQFRGLGDKAIRLFAHMYCSGIGFDRATLLSVFSSLNECSAFDELNIPLRNCFVLHCLATKT GLISEVEVVTALVKSYANLGGQISDCYRLFLDTSGKQDIVSWTAIITVLADQDPEQAFLLFCQLHRENFVPDWHTFSIAL KACAYFVTEQQALAVHSQVIKRGFQKDTVLSNALIHAYARSGSLALSEQVFDEMCCHDLVSWNSMLKSYALHGKAKDALE LFKKLDVHPDSTTFVALLSACSHAGLVEEGVEIFNSMSDNHGIVPQLDHYACMVDLYGRVGKISEAEDLIHTMPMKPDSV IWSSLLGSCRKHGETRLARIAAEKFKELDPKNSLGYVQMSNIYSSEGSFIEAGLIRKEMRDSRVKKQPGLSWVEVGKQVH EFTSGGHHHPHKEAIQSRLEILIGQLKEMGYVPEITLALYDTEVEHKEDQLFHHSEKMALVFAIMNEGNLPCGGNVIKIM KNIRICADCHNFMKLASNLFQKEIVVRDSNRFHHFKNATCSCNDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 187 | 159 | 7.9E-107 | – | |
| Gene3D | 35 | 187 | 153 | 3.4E-26 | ||
| ProSiteProfiles | 72 | 106 | 35 | 6.566 | ||
| SUPERFAMILY | 72 | 629 | 558 | 2.66E-6 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.591 | ||
| Pfam | 114 | 141 | 28 | 0.0049 | ||
| TIGRFAM | 114 | 142 | 29 | 6.3E-4 | ||
| Pfam | 142 | 165 | 24 | 1.2E-4 | ||
| Gene3D | 188 | 302 | 115 | 5.2E-11 | ||
| PANTHER | 193 | 302 | 110 | 7.9E-107 | – | |
| ProSiteProfiles | 248 | 282 | 35 | 8.813 | ||
| Pfam | 250 | 280 | 31 | 0.0027 | ||
| Gene3D | 306 | 408 | 103 | 9.4E-8 | ||
| PANTHER | 313 | 409 | 97 | 7.9E-107 | – | |
| ProSiteProfiles | 358 | 391 | 34 | 6.577 | ||
| ProSiteProfiles | 392 | 426 | 35 | 5.93 | ||
| Gene3D | 409 | 503 | 95 | 9.3E-21 | ||
| PANTHER | 415 | 616 | 202 | 7.9E-107 | – | |
| ProSiteProfiles | 427 | 461 | 35 | 9.328 | ||
| Pfam | 432 | 456 | 25 | 0.0058 | ||
| TIGRFAM | 432 | 459 | 28 | 0.0011 | ||
| TIGRFAM | 460 | 485 | 26 | 8.8E-4 | ||
| Pfam | 460 | 485 | 26 | 1.5E-5 | ||
| ProSiteProfiles | 462 | 488 | 27 | 5.842 | ||
| ProSiteProfiles | 490 | 525 | 36 | 9.482 | ||
| TIGRFAM | 493 | 525 | 33 | 3.7E-5 | ||
| Pfam | 493 | 519 | 27 | 8.4E-4 | ||
| Gene3D | 507 | 661 | 155 | 3.7E-14 | ||
| ProSiteProfiles | 526 | 556 | 31 | 7.136 | ||
| Pfam | 530 | 554 | 25 | 0.068 | ||
| ProSiteProfiles | 558 | 588 | 31 | 5.908 | ||
| ProSiteProfiles | 592 | 626 | 35 | 6.522 | ||
| Pfam | 628 | 756 | 129 | 5.6E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0447300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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